genome.fa.s8.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  40  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10380970--10381073	36	2.9	36	94	0	181	21	27	17	33	1.95
10381488--10381576	44	2.0	44	97	0	169	30	28	17	23	1.97
10383958--10384002	19	2.4	19	81	7	56	37	0	4	57	1.19
10384112--10384147	16	2.2	16	100	0	72	38	8	16	36	1.79
10384112--10384153	16	2.6	16	92	0	57	42	7	14	35	1.73
10384818--10384860	22	2.0	22	86	9	61	20	6	0	72	1.08
10387387--10387434	8	5.6	8	78	11	51	14	4	0	81	0.84
10388971--10389019	19	2.6	19	78	12	57	36	0	6	57	1.24
10389804--10389862	21	2.9	20	85	9	75	18	8	0	72	1.09
10389804--10389861	15	3.8	15	77	6	55	18	8	0	72	1.10
10389818--10389863	21	2.2	21	96	0	83	19	6	0	73	1.04
10391709--10391771	26	2.4	26	81	0	81	44	9	11	34	1.73
10394436--10394478	18	2.4	18	80	7	52	51	0	2	46	1.13
10404590--10404622	5	6.6	5	100	0	66	0	81	0	18	0.68
10415091--10415143	24	2.2	24	86	0	70	5	7	58	28	1.48
10415027--10415169	36	4.0	36	80	0	151	20	4	53	20	1.62
10415163--10415210	18	2.7	18	80	0	51	4	6	58	31	1.42
10415139--10415943	78	10.4	78	77	8	529	16	5	54	23	1.63
10415250--10415296	24	2.0	24	100	0	94	4	10	59	25	1.49
10415238--10415300	24	2.3	29	69	28	73	7	7	58	25	1.53
10415256--10415308	24	2.2	24	82	0	61	11	9	58	20	1.60
10415274--10415461	54	3.4	54	82	4	223	18	5	53	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10415291--10415432	57	2.6	54	91	5	214	21	5	52	21	1.67
10415427--10415609	6	29.5	6	68	8	53	12	4	57	25	1.53
10415444--10415683	24	9.8	24	69	8	106	12	4	56	26	1.55
10415445--10415695	48	5.1	48	69	9	164	13	4	56	25	1.55
10415613--10415670	30	1.9	30	82	0	71	10	5	56	27	1.54
10415628--10415675	18	2.7	18	80	0	51	4	6	58	31	1.42
10415646--10415686	12	3.4	12	82	0	55	4	2	58	34	1.32
10415135--10415940	150	5.2	150	71	12	481	16	5	54	23	1.63
10415886--10416107	48	4.6	48	75	4	214	16	4	55	22	1.61
10415654--10415983	150	2.2	150	87	1	455	16	6	54	22	1.65
10415658--10416094	72	5.9	71	75	9	349	16	5	54	23	1.64
10415960--10416055	24	4.0	24	69	0	66	12	6	56	25	1.59
10418015--10418077	27	2.3	27	83	8	74	44	1	1	52	1.20
10418732--10418776	23	2.0	23	86	0	63	31	15	20	33	1.93
10419016--10419112	42	2.3	42	94	0	167	48	19	1	30	1.56
10419455--10419556	52	2.0	52	82	3	125	17	7	11	62	1.51
10419801--10419829	5	5.8	5	100	0	58	20	20	17	41	1.90
10422071--10422408	30	11.5	30	68	13	184	36	5	26	31	1.79
10422071--10422408	59	5.7	59	91	0	543	36	5	26	31	1.79
10422135--10422498	59	6.1	60	85	7	186	34	5	27	33	1.80
10422387--10422498	30	3.7	30	84	3	145	31	3	26	38	1.74
10422595--10422907	162	1.9	162	90	2	495	46	12	16	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10422642--10422991	162	2.2	161	80	5	393	49	11	16	22	1.77
10424373--10424405	14	2.4	14	94	0	57	15	15	33	36	1.88
10424465--10424527	31	2.0	31	87	0	90	50	3	0	46	1.17
10424435--10424533	6	16.2	6	76	12	85	46	2	1	50	1.19
10424438--10424533	42	2.2	43	80	15	110	47	2	1	48	1.20
10424469--10424542	17	4.2	17	77	14	62	55	2	0	41	1.14
10425189--10425269	36	2.3	36	95	2	146	41	6	7	44	1.57
10430909--10430963	26	2.1	27	86	10	78	54	0	1	43	1.10
10436358--10436411	20	2.6	19	80	13	54	42	5	0	51	1.25
10436376--10436418	23	2.0	21	86	9	59	39	4	0	55	1.20
10439207--10439252	22	2.1	22	84	8	58	54	2	0	43	1.12
10439210--10439260	9	5.3	9	76	19	50	60	1	0	37	1.08
10439397--10439474	9	8.4	9	74	14	61	58	0	0	41	0.98
10439713--10439738	10	2.6	10	100	0	52	34	0	7	57	1.27
10439804--10439868	10	6.2	10	76	15	60	32	3	1	63	1.19
10443187--10443271	29	2.9	30	81	8	102	37	5	9	47	1.60
10443191--10443279	31	3.0	31	77	11	96	37	5	10	47	1.61
10443716--10443772	29	1.9	30	92	3	98	54	10	3	31	1.51
10446114--10446251	68	2.0	68	100	0	276	38	0	13	48	1.42
10457073--10457149	24	3.7	21	77	14	79	29	0	3	66	1.10
10457316--10457365	26	1.9	26	83	0	64	58	8	10	24	1.57
10457604--10457674	33	2.2	33	97	0	133	50	28	2	18	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10465476--10465520	22	2.0	22	83	12	56	31	0	2	66	1.04
10466673--10466736	30	2.1	30	91	0	101	23	10	6	59	1.54
10466874--10466934	15	4.2	15	72	8	54	24	3	19	52	1.61
10466855--10466922	24	2.8	24	68	16	68	20	2	22	54	1.58
10466865--10466929	28	2.3	29	81	2	78	20	3	21	55	1.57
10466992--10467053	31	2.0	31	87	0	88	24	4	20	50	1.68
10468100--10468188	29	3.1	28	79	10	99	23	2	19	55	1.54
10468181--10468224	18	2.7	15	78	21	52	25	4	18	52	1.64
10468093--10468236	38	3.8	37	75	16	127	25	2	18	54	1.57
10470933--10470992	30	2.0	30	96	0	111	28	26	18	26	1.98
10471997--10472041	13	3.4	13	81	6	54	24	2	22	51	1.60
10471983--10472090	45	2.4	45	87	1	144	25	4	20	49	1.68
10472879--10472934	28	2.1	26	87	9	78	66	0	23	10	1.23
10474054--10474093	21	1.9	21	90	10	64	55	10	12	22	1.67
10473965--10474350	198	2.0	194	93	3	657	34	19	11	34	1.88
10481522--10481711	74	2.6	74	78	4	195	31	20	17	30	1.96
10489774--10489821	24	2.0	24	95	0	87	33	18	29	18	1.95
10495414--10495457	23	2.0	23	86	4	63	34	4	2	59	1.30
10496570--10496611	22	1.9	22	90	0	66	23	11	40	23	1.88
10496623--10496678	22	2.5	22	82	5	60	21	19	25	33	1.97
10498068--10498207	30	4.7	30	82	5	167	36	2	22	38	1.69
10498037--10498218	89	2.0	90	82	5	217	35	4	22	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10500058--10500098	17	2.4	17	92	8	66	48	7	0	43	1.30
10500086--10500120	6	6.0	6	93	6	63	48	0	0	51	1.00
10512664--10512767	28	3.7	27	74	11	75	34	4	25	34	1.78
10512664--10512774	57	1.9	57	82	7	136	36	4	25	33	1.76
10512815--10512918	30	3.5	29	76	16	88	36	4	19	39	1.73
10512875--10513019	30	4.9	29	74	13	118	34	4	27	33	1.78
10512875--10513019	59	2.5	59	81	7	172	34	4	27	33	1.78
10512811--10513019	29	7.1	29	71	11	131	33	5	25	34	1.79
10514740--10514783	23	2.0	23	86	4	63	36	4	0	59	1.18
10515898--10515939	22	1.9	22	90	0	66	23	11	40	23	1.88
10518465--10518496	15	2.3	15	89	10	50	15	9	6	68	1.36
10526332--10526373	22	1.9	22	90	0	66	23	40	11	23	1.88
10527482--10527525	23	2.0	23	86	4	63	59	0	4	36	1.18
10532122--10532153	15	2.3	15	89	10	50	68	6	9	15	1.36
10534678--10534719	22	1.9	22	90	0	66	23	40	11	23	1.88
10536572--10536712	60	2.4	58	88	5	194	34	5	29	30	1.81
10536694--10537098	30	13.6	31	86	6	529	36	2	23	37	1.68
10537699--10537738	20	2.0	20	85	0	53	10	42	17	30	1.82
10538097--10538129	17	1.9	17	93	0	57	39	0	3	57	1.14
10538832--10538923	17	5.5	16	78	15	80	51	2	3	43	1.30
10538849--10538920	6	12.7	6	74	14	64	52	1	4	41	1.29
10538848--10538923	11	6.8	11	77	8	82	51	1	3	43	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10539210--10539447	68	3.5	67	83	4	307	28	20	16	35	1.94
10539291--10539400	31	3.4	31	72	14	103	29	20	13	37	1.91
10539275--10539962	169	4.0	171	74	14	603	29	20	16	33	1.95
10539447--10539968	69	7.6	69	92	3	831	29	20	16	33	1.95
10552020--10552426	30	13.6	30	84	7	517	36	2	23	37	1.70
10552756--10552797	9	4.7	9	80	11	50	76	2	19	2	1.01
10552900--10552953	24	2.3	24	93	3	92	29	44	25	0	1.54
10553518--10553836	30	10.6	30	92	3	518	36	24	3	35	1.72
10553818--10553954	29	4.7	29	73	8	118	31	30	5	32	1.79
10553816--10553954	58	2.4	59	92	2	228	31	30	5	32	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163