genome.fa.s8.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  50  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12434885--12435014	58	2.2	58	93	1	215	33	33	1	31	1.67
12434920--12435015	30	3.2	29	68	19	81	31	32	2	34	1.70
12445548--12445609	3	20.7	3	83	6	81	64	0	1	33	1.03
12446668--12446700	13	2.5	13	95	5	57	39	24	21	15	1.91
12452745--12452788	3	14.7	3	80	0	52	59	0	2	38	1.10
12452746--12452788	9	4.8	9	91	0	68	58	0	2	39	1.11
12453890--12453948	22	2.7	22	89	0	82	32	30	22	15	1.94
12460486--12460517	15	2.1	15	94	0	55	62	0	6	31	1.20
12473005--12473038	10	3.3	10	95	4	59	0	17	17	64	1.29
12475815--12475848	10	3.3	10	91	4	50	0	17	20	61	1.34
12477824--12478027	71	2.9	69	80	13	220	30	12	7	48	1.70
12477836--12478028	69	2.7	70	81	9	196	31	12	7	48	1.69
12481580--12481727	69	2.1	69	93	0	260	31	19	16	33	1.94
12488685--12488715	13	2.4	13	94	0	53	41	0	9	48	1.36
12488769--12488823	25	2.2	25	84	12	69	36	0	7	56	1.27
12493972--12494005	16	2.1	16	89	10	52	23	20	14	41	1.89
12501125--12501168	23	1.9	23	86	9	63	38	2	0	59	1.10
12501674--12501716	18	2.4	18	92	7	70	44	0	0	55	0.99
12501999--12502333	180	1.8	183	82	4	437	48	8	11	31	1.69
12508383--12508415	13	2.5	13	95	0	57	0	15	3	81	0.80
12508748--12508795	24	2.1	24	84	7	64	4	4	25	66	1.27
12508748--12508941	23	8.7	22	74	12	80	8	5	20	65	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12508777--12508882	44	2.4	44	81	6	117	8	6	19	65	1.43
12508777--12508874	22	4.5	21	82	6	106	9	6	20	64	1.44
12508844--12508943	12	8.7	12	72	8	73	9	6	18	67	1.39
12508756--12508926	23	7.7	23	77	10	124	8	6	18	66	1.39
12508844--12508943	45	2.2	47	85	3	132	9	6	18	67	1.39
12508952--12508989	20	1.9	19	85	15	51	13	15	10	60	1.59
12511453--12511500	11	4.4	11	81	5	53	70	10	4	14	1.29
12512525--12512584	25	2.4	25	86	2	77	53	8	15	23	1.68
12520761--12520795	4	8.8	4	100	0	70	51	25	0	22	1.48
12522039--12522071	14	2.4	14	94	0	57	54	0	6	39	1.25
12522041--12522075	14	2.4	14	90	4	52	57	0	5	37	1.23
12522114--12522154	15	2.5	17	80	11	59	65	0	0	34	0.93
12523622--12523703	29	2.7	31	83	5	96	50	12	7	30	1.67
12523635--12523705	31	2.4	28	81	11	79	47	11	8	32	1.69
12524128--12524181	6	9.3	6	78	15	60	40	1	0	57	1.09
12524128--12524181	11	4.7	12	78	17	60	40	1	0	57	1.09
12524128--12524178	17	3.0	17	85	8	68	41	1	0	56	1.10
12525886--12526057	30	5.8	29	81	7	132	38	24	4	33	1.74
12525950--12526079	30	4.4	29	81	6	122	40	25	3	31	1.71
12526021--12526079	29	2.0	29	90	0	91	40	27	3	28	1.72
12533362--12533405	21	2.1	21	83	8	54	56	4	0	38	1.20
12539283--12539476	52	3.8	52	86	4	259	32	24	13	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12546043--12546183	52	2.7	52	83	4	160	33	21	14	29	1.94
12546148--12546219	36	2.0	36	94	0	126	29	26	12	31	1.93
12546096--12546271	88	2.0	88	94	0	307	31	24	13	30	1.94
12546614--12546643	16	1.9	16	93	6	53	36	20	6	36	1.79
12551521--12551550	15	2.0	15	100	0	60	26	13	20	40	1.89
12553992--12554033	20	2.2	20	87	8	61	69	7	2	21	1.25
12555845--12555870	6	4.3	6	100	0	52	0	0	30	69	0.89
12563935--12563981	18	2.6	18	96	0	85	14	34	6	44	1.71
12564565--12564597	16	2.0	17	88	5	50	3	27	6	63	1.32
12566080--12566138	29	2.0	29	100	0	118	33	16	13	35	1.88
12566802--12566836	18	1.9	18	88	0	52	31	2	22	42	1.68
12578745--12578930	41	4.5	41	82	4	194	24	27	11	35	1.91
12580445--12580484	20	2.0	20	85	14	55	17	32	10	40	1.83
12583583--12583620	20	1.9	19	89	5	58	42	2	23	31	1.68
12585480--12585530	21	2.4	21	80	6	59	33	15	19	31	1.93
12597619--12597697	20	3.9	20	76	16	74	44	1	2	51	1.23
12597673--12597727	25	2.2	25	81	12	60	47	1	3	47	1.30
12601102--12601141	15	2.5	15	88	12	53	30	2	2	65	1.19
12601378--12601434	23	2.5	23	80	5	62	75	3	5	15	1.12
12601687--12601793	31	3.5	31	77	7	83	48	3	0	46	1.26
12601686--12601758	30	2.3	32	79	6	87	50	2	0	46	1.15
12610246--12610289	20	2.0	21	87	12	63	50	2	4	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12612059--12612451	41	9.6	41	77	9	227	31	22	26	20	1.98
12612059--12612406	82	4.2	82	79	6	271	29	22	27	20	1.99
12612166--12612397	81	2.8	81	85	5	245	28	24	25	21	1.99
12612204--12612424	122	1.8	122	83	7	297	28	25	24	21	1.99
12613098--12613141	19	2.4	19	81	11	56	45	6	2	45	1.42
12614554--12614665	41	2.7	41	87	0	143	33	15	27	23	1.94
12617844--12617977	43	3.1	43	86	0	142	27	17	25	29	1.97
12622549--12622588	21	1.9	21	89	0	62	40	22	27	10	1.86
12625458--12625504	21	2.2	21	82	10	60	59	2	2	36	1.21
12637663--12637714	21	2.5	21	87	0	68	26	15	23	34	1.94
12641499--12641569	37	1.9	37	88	0	106	40	12	9	36	1.77
12644806--12644854	24	2.0	24	100	0	98	44	4	12	38	1.61
12645583--12645737	67	2.3	67	86	3	204	29	23	20	27	1.98
12645643--12645884	102	2.3	103	84	3	308	30	20	19	29	1.97
12651055--12651127	26	2.6	28	87	6	96	28	13	12	45	1.80
12652579--12652796	29	7.4	29	72	13	144	32	5	27	35	1.79
12652597--12652737	28	4.9	29	76	8	144	29	5	29	35	1.80
12652597--12652738	58	2.4	58	80	9	164	30	5	28	35	1.80
12652657--12652947	58	4.9	58	74	17	165	34	3	26	35	1.75
12652657--12652947	30	9.9	29	72	11	150	34	3	26	35	1.75
12652657--12652833	87	2.0	85	82	9	207	34	4	26	34	1.77
12653600--12653830	91	2.6	91	96	1	421	35	23	8	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12654675--12654755	17	4.8	17	84	3	110	54	4	1	39	1.30
12654681--12654755	34	2.2	33	95	2	132	54	4	1	40	1.27
12655150--12655760	39	15.7	39	72	9	257	26	20	28	24	1.99
12655122--12655678	78	7.2	78	77	5	482	27	20	28	24	1.99
12655148--12655681	233	2.3	230	83	3	647	27	20	28	24	1.99
12658043--12658069	3	9.0	3	100	0	54	0	33	0	66	0.92
12662069--12662118	24	2.1	24	96	0	91	20	26	14	40	1.90
12663610--12663643	17	2.0	17	94	0	59	44	20	5	29	1.75
12667452--12667521	29	2.4	30	83	9	90	40	4	25	30	1.75
12667557--12667791	29	8.2	29	75	8	176	32	6	26	34	1.82
12667632--12667972	59	5.8	56	73	11	184	35	4	25	34	1.77
12667557--12667830	87	3.2	86	80	5	268	33	5	26	34	1.80
12667632--12668127	117	4.2	114	76	9	358	36	3	26	33	1.75
12667778--12667850	30	2.4	29	86	4	92	39	1	21	36	1.62
12667709--12668122	29	14.2	29	72	11	215	37	3	24	34	1.72
12667698--12668127	88	4.9	85	81	8	318	36	3	25	34	1.72
12669136--12669171	18	1.9	19	94	5	65	47	0	0	52	1.00
12669838--12669882	17	2.6	18	85	7	65	57	6	2	33	1.37
12669856--12669904	23	2.2	23	92	3	82	55	6	2	36	1.37
12672506--12672617	54	2.1	54	98	0	215	31	22	16	29	1.96
12678616--12678674	26	2.3	24	80	11	64	61	0	1	37	1.07
12679221--12679295	32	2.5	30	79	12	82	33	4	1	61	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12679282--12679327	17	2.6	18	73	13	51	30	0	2	67	1.03
12683666--12683774	3	36.3	3	98	0	209	33	0	0	66	0.92
12694729--12694825	48	2.0	48	93	0	167	41	8	25	24	1.83
12696303--12696595	30	9.9	29	74	12	161	36	3	26	33	1.73
12696319--12696393	29	2.7	29	83	4	91	36	2	26	34	1.71
12696303--12696589	59	4.9	59	76	10	241	36	3	26	33	1.74
12696303--12696589	89	3.2	87	79	7	240	36	3	26	33	1.74
12697378--12697432	28	1.9	28	81	3	65	23	7	1	67	1.26
12697414--12697452	11	3.5	11	83	10	53	15	2	0	82	0.79
12698439--12698499	17	3.6	17	88	0	77	60	3	1	34	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163