genome.fa.s8.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  114  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31953035--31953061	5	5.4	5	100	0	54	22	18	18	40	1.91
31959815--31959855	20	2.0	20	95	0	73	51	4	12	31	1.60
31965400--31965440	21	2.0	21	85	0	55	58	2	19	19	1.50
31969799--31969825	7	3.9	7	100	0	54	44	11	29	14	1.80
31972224--31972264	20	2.0	20	85	9	55	34	2	0	63	1.08
31972429--31972488	12	5.1	12	72	9	52	51	1	0	46	1.10
31972432--31972499	35	1.9	35	82	11	86	51	1	1	45	1.19
31975491--31975552	6	10.8	6	74	10	58	40	1	1	56	1.19
31975463--31975569	34	3.1	34	80	5	110	38	0	5	55	1.30
31975463--31975552	17	5.3	17	82	4	110	37	1	4	56	1.27
31975495--31975553	11	5.3	11	77	4	64	40	1	1	55	1.20
31977480--31977909	59	7.3	59	82	7	457	32	29	3	34	1.73
31977652--31977805	30	5.2	30	68	22	92	33	27	3	34	1.75
31977501--31977763	29	9.0	28	66	21	114	32	28	3	36	1.73
31985341--31985383	18	2.4	18	100	0	86	34	18	25	20	1.96
31990346--31990626	86	3.3	86	95	0	499	33	20	26	18	1.96
31991026--31991132	17	6.3	17	77	7	101	36	1	5	56	1.34
31991075--31991133	11	5.3	11	71	4	55	37	0	5	57	1.21
31991054--31991132	6	13.8	6	74	10	58	37	1	3	56	1.25
31991071--31991131	23	2.7	23	85	7	81	36	0	4	59	1.19
31991093--31991150	28	2.1	28	83	6	73	39	0	6	53	1.28
31991897--31991950	22	2.5	21	76	8	63	55	3	0	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31993080--31993238	29	5.4	29	72	21	134	30	30	4	35	1.77
31993078--31993324	58	4.2	59	84	6	306	30	29	4	35	1.76
31996395--31996536	48	3.0	48	91	0	230	24	9	14	50	1.73
31996395--31996575	48	3.7	49	85	8	224	22	8	16	53	1.70
31998427--31998468	13	3.2	13	77	12	50	50	11	9	28	1.70
31998418--31998468	26	2.0	26	92	0	84	50	11	7	29	1.67
31999070--31999189	28	4.1	29	75	8	91	35	1	6	55	1.36
31999113--31999188	30	2.5	30	87	6	100	40	1	6	51	1.36
31999890--31999934	23	2.0	23	86	0	63	42	6	2	48	1.41
32010271--32010309	19	2.1	19	100	0	78	28	10	20	41	1.85
32019139--32019183	19	2.3	19	88	3	63	46	2	2	48	1.26
32019214--32019259	22	2.1	22	83	0	56	47	2	2	47	1.26
32019336--32019377	22	2.0	22	90	4	68	47	0	4	47	1.23
32019572--32019631	31	1.9	32	89	3	95	25	16	11	46	1.81
32019544--32019728	98	1.9	99	83	1	246	25	15	10	48	1.78
32021908--32021957	26	2.0	26	84	11	68	32	2	0	66	1.03
32021946--32022029	36	2.3	36	83	4	98	33	0	3	63	1.12
32021968--32022030	16	3.7	16	76	15	63	34	0	3	61	1.12
32021923--32022010	22	4.4	18	71	23	61	31	0	1	67	0.99
32021928--32022013	20	4.2	20	77	13	86	32	0	1	66	1.00
32026628--32026672	24	2.0	22	86	8	63	55	8	11	24	1.63
32028600--32028650	24	2.1	24	88	0	75	60	9	7	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32032837--32032891	24	2.3	24	96	0	101	21	16	27	34	1.95
32035678--32035712	16	2.2	16	94	0	61	25	0	0	74	0.82
32035920--32035957	15	2.5	15	84	12	51	5	2	13	78	1.02
32035951--32035995	18	2.5	18	82	7	56	20	4	6	68	1.29
32041044--32041072	14	2.0	15	93	6	51	17	82	0	0	0.66
32042124--32042342	105	2.1	104	86	3	296	29	23	13	33	1.93
32045176--32045349	59	3.0	58	81	7	208	34	2	30	32	1.73
32047261--32047300	18	2.3	18	86	4	55	55	5	0	40	1.22
32047285--32047309	13	1.9	13	100	0	50	52	8	0	40	1.31
32048332--32048365	2	17.0	2	100	0	68	50	0	0	50	1.00
32048979--32049197	43	4.9	45	85	4	259	33	26	16	23	1.96
32050932--32050964	15	2.1	16	88	5	50	21	0	12	66	1.23
32051166--32051212	17	2.9	16	82	17	53	14	6	2	76	1.08
32051529--32051737	111	1.9	111	84	3	280	34	8	12	44	1.74
32056368--32056573	105	2.0	105	85	1	279	28	23	13	34	1.93
32056721--32056938	107	2.0	107	100	0	436	33	19	16	30	1.94
32057914--32058045	70	1.9	66	83	6	165	31	9	13	44	1.77
32061026--32061050	10	2.5	10	100	0	50	52	8	0	40	1.31
32063153--32063177	12	2.1	12	100	0	50	44	32	8	16	1.76
32068290--32068329	20	2.0	20	95	0	71	22	10	22	45	1.82
32069520--32069571	9	5.6	9	88	8	77	30	9	40	19	1.83
32069520--32069571	19	2.8	19	94	2	88	30	9	40	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32069745--32069803	29	2.0	31	83	6	77	50	10	3	35	1.53
32098048--32098109	29	2.1	29	82	11	74	59	1	3	35	1.23
32100491--32100560	34	2.1	35	83	5	90	44	5	1	48	1.35
32105644--32105699	16	3.5	16	85	11	71	39	5	28	26	1.78
32105871--32105953	26	3.0	26	67	24	69	50	2	0	46	1.14
32105869--32106023	58	2.6	59	85	9	192	50	1	1	46	1.17
32105869--32105953	27	2.9	29	69	23	88	50	2	0	47	1.14
32105988--32106038	24	2.1	24	82	10	59	56	0	5	37	1.23
32111640--32111708	30	2.3	30	80	7	77	39	5	10	44	1.62
32115229--32115260	16	2.0	16	100	0	64	43	6	25	25	1.77
32115232--32115267	16	2.2	16	90	0	54	47	2	19	30	1.64
32116438--32116466	15	1.9	15	100	0	58	17	0	27	55	1.42
32120346--32120372	12	2.2	12	100	0	54	77	7	0	14	0.97
32124542--32124585	23	1.9	22	86	9	61	59	9	4	27	1.48
32125673--32125865	78	2.5	78	95	0	341	31	17	29	21	1.96
32126060--32126300	81	3.0	81	92	1	394	20	24	17	37	1.93
32127183--32127214	16	2.1	16	94	5	57	59	0	0	40	0.97
32133386--32133431	25	1.9	23	86	8	65	36	4	4	54	1.40
32139332--32139365	18	1.9	17	88	5	50	23	11	8	55	1.63
32140655--32140700	18	2.6	18	86	6	58	41	21	17	19	1.90
32158306--32158367	26	2.3	27	81	13	74	67	1	30	0	1.00
32174191--32174222	3	10.3	3	93	6	55	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32176150--32176238	46	1.9	46	95	0	160	43	16	5	33	1.72
32181090--32181165	21	3.6	21	75	12	75	28	15	27	27	1.96
32182257--32182310	26	2.1	26	100	0	108	59	14	7	18	1.58
32182815--32182872	29	2.0	30	86	3	82	48	0	8	43	1.34
32188459--32188524	28	2.4	28	80	12	82	36	1	1	60	1.15
32188478--32188534	29	1.9	29	86	10	80	31	1	1	64	1.13
32188555--32188609	25	2.3	23	76	14	58	30	0	5	63	1.17
32204972--32205021	12	4.2	12	82	10	66	66	0	34	0	0.92
32210881--32210993	59	1.9	59	83	3	147	38	5	13	43	1.66
32217282--32217385	30	3.5	30	85	1	138	37	4	17	40	1.71
32217283--32217404	30	4.1	30	80	8	108	36	4	20	37	1.74
32218533--32218579	17	2.7	18	83	6	53	21	2	4	72	1.12
32218586--32218628	4	11.2	4	85	9	63	74	0	2	23	0.93
32218586--32218634	22	2.2	22	92	0	80	73	0	2	24	0.94
32218588--32218624	18	2.1	18	94	0	65	75	0	2	21	0.92
32218890--32219003	20	5.7	20	79	6	106	30	6	21	41	1.78
32218912--32219003	40	2.3	40	86	0	121	29	6	23	40	1.80
32218917--32218993	10	7.7	10	70	11	50	27	7	23	41	1.81
32220604--32220650	10	4.7	10	76	10	51	65	0	6	27	1.16
32220593--32220725	30	4.5	29	75	15	121	66	1	6	26	1.24
32220633--32220727	40	2.4	40	77	13	97	66	2	5	26	1.24
32220911--32220961	9	5.4	10	77	11	54	29	0	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32220910--32220998	9	10.0	9	67	16	51	29	2	1	67	1.10
32220911--32221025	10	11.2	10	67	20	51	31	2	0	65	1.12
32220929--32221025	31	3.1	31	74	12	99	31	3	0	64	1.09
32222496--32222596	49	2.0	50	81	11	118	36	4	6	51	1.51
32222776--32223084	81	3.8	81	85	3	361	32	11	11	44	1.77
32223360--32223419	27	2.2	28	82	8	70	41	5	11	41	1.63
32226751--32226780	15	1.9	16	93	6	53	63	0	3	33	1.11
32227075--32227122	9	5.4	9	83	11	64	33	0	0	66	0.92
32227076--32227132	26	2.2	26	81	12	64	33	0	0	66	0.92
32229307--32229594	109	2.6	109	81	3	355	31	27	16	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163