genome.fa.s8.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  127  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34959653--34959714	33	1.9	32	83	3	79	38	30	4	25	1.77
34961532--34961560	11	2.5	12	94	5	51	0	51	0	48	1.00
34966854--34966895	22	1.9	22	85	9	59	59	0	9	30	1.29
34975391--34975497	52	2.0	53	96	1	198	12	29	6	51	1.64
35000305--35000352	22	2.1	24	84	7	64	60	6	4	29	1.40
35000529--35000593	20	3.2	20	72	12	53	70	0	7	21	1.11
35000547--35000599	25	2.0	26	82	13	65	69	0	5	24	1.09
35002264--35002300	17	2.2	17	90	0	56	59	2	0	37	1.12
35002294--35002339	19	2.4	19	89	7	67	58	13	4	23	1.52
35003094--35003130	19	1.9	19	88	0	56	56	0	5	37	1.22
35004268--35004443	29	6.1	29	71	19	125	33	28	2	34	1.72
35004331--35004487	29	5.3	30	67	25	102	32	30	3	33	1.74
35004293--35004501	59	3.6	58	85	3	267	34	27	3	34	1.74
35004408--35004577	89	1.9	90	82	3	218	34	27	2	35	1.72
35004468--35004529	30	2.1	29	87	3	88	37	25	3	33	1.72
35004285--35004529	118	2.1	117	77	11	268	33	28	3	34	1.73
35007497--35007544	26	1.9	26	83	8	64	58	0	6	35	1.23
35007813--35007852	14	2.7	15	80	7	55	32	2	0	65	1.06
35016085--35016130	7	6.6	7	84	0	56	47	26	0	26	1.52
35016085--35016147	14	4.5	14	80	4	74	44	30	0	25	1.54
35016085--35016147	28	2.2	28	86	10	85	44	30	0	25	1.54
35015997--35016123	58	2.2	57	78	12	134	47	25	0	26	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35016085--35016144	21	2.9	21	80	9	68	46	26	0	26	1.53
35017157--35017420	146	1.8	146	87	0	393	36	8	24	30	1.85
35017321--35017420	28	3.5	27	70	15	76	36	6	25	33	1.80
35017466--35017610	29	4.9	30	78	13	142	33	4	28	33	1.76
35017438--35017610	58	2.9	57	81	11	149	32	5	28	32	1.79
35017490--35017605	29	3.9	29	82	7	153	33	5	28	32	1.79
35017466--35017610	59	2.4	58	84	7	159	33	4	28	33	1.76
35018042--35018763	92	8.0	92	90	4	1146	33	19	15	31	1.93
35018852--35019184	100	3.3	100	84	5	336	11	21	23	42	1.86
35018899--35019192	100	2.9	100	85	2	376	10	21	25	42	1.85
35018899--35019184	50	5.7	49	78	8	274	10	22	24	43	1.84
35026098--35026159	28	2.2	28	88	5	90	27	9	27	35	1.88
35026136--35026304	58	2.9	58	76	5	164	36	7	24	31	1.83
35026116--35026224	29	3.8	28	71	14	69	39	6	22	32	1.79
35026261--35026476	29	7.5	28	74	10	123	35	1	25	37	1.67
35026261--35026486	57	3.9	57	77	10	226	34	2	25	37	1.70
35026260--35026490	87	2.7	86	78	6	250	34	2	25	36	1.70
35026291--35026490	29	6.9	28	76	5	166	35	2	25	36	1.70
35027605--35027645	18	2.3	18	87	8	57	41	2	2	53	1.27
35028478--35028541	17	3.8	17	86	12	78	56	1	0	42	1.09
35028496--35028571	11	6.8	11	78	3	71	59	1	0	39	1.06
35028482--35028548	34	2.0	34	85	5	91	58	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35028479--35028568	17	5.3	17	77	5	74	60	1	0	38	1.04
35028521--35028583	23	2.8	23	80	9	67	63	1	1	33	1.13
35028499--35028560	6	10.7	6	84	6	65	62	1	0	35	1.05
35029433--35029473	14	2.6	16	82	17	50	41	4	0	53	1.22
35053806--35053907	38	2.7	38	86	3	134	17	13	32	36	1.89
35055806--35055830	2	12.5	2	100	0	50	48	0	0	52	1.00
35056692--35056748	6	9.8	6	71	21	50	52	1	3	42	1.28
35056670--35056730	27	2.3	27	86	8	88	52	4	1	40	1.33
35056692--35056748	17	3.3	17	85	11	80	52	1	3	42	1.28
35065286--35065518	114	2.0	114	88	4	346	21	27	18	33	1.96
35069211--35069274	32	2.0	32	100	0	128	34	6	25	34	1.81
35072302--35072375	37	2.0	38	91	2	123	21	32	12	33	1.90
35078579--35078623	22	2.0	22	100	0	90	44	17	13	24	1.85
35079307--35079385	24	3.3	24	85	0	104	26	12	7	53	1.65
35080285--35080332	23	2.1	23	100	0	96	31	16	22	29	1.96
35081153--35081245	6	16.7	6	75	14	83	43	0	1	55	1.06
35081141--35081238	27	3.5	27	83	9	117	39	0	2	58	1.10
35081141--35081222	11	7.4	11	77	14	71	37	0	2	59	1.11
35081213--35081257	12	3.9	12	77	19	51	51	2	0	46	1.13
35081153--35081240	17	5.7	16	78	16	96	42	0	1	56	1.06
35081214--35081246	16	2.1	16	94	0	57	51	0	0	48	1.00
35082027--35082062	12	2.9	12	91	4	54	50	0	8	41	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35082476--35082549	33	2.2	33	100	0	148	24	29	41	4	1.73
35082932--35083254	162	2.0	162	87	2	461	27	17	12	42	1.85
35083434--35083527	30	3.2	30	69	22	90	36	24	2	37	1.68
35083402--35083612	59	3.6	58	91	1	323	35	26	2	36	1.69
35083444--35083631	30	6.4	30	69	13	131	33	28	3	35	1.73
35083402--35083612	117	1.8	117	90	2	343	35	26	2	36	1.69
35090176--35090240	30	2.2	30	91	0	103	24	13	36	24	1.92
35092508--35092546	20	1.9	21	85	15	55	38	2	2	56	1.27
35092688--35092738	19	2.7	19	77	14	52	31	0	3	64	1.11
35092707--35092766	10	5.8	10	74	18	52	30	0	1	68	0.99
35092690--35092766	20	3.8	19	77	19	68	31	0	2	66	1.05
35095432--35095555	30	4.1	29	82	11	135	34	1	20	42	1.62
35095709--35095754	6	8.0	6	83	9	60	43	0	4	52	1.21
35095713--35095771	11	5.3	11	76	13	59	45	0	3	50	1.18
35095709--35095770	17	3.6	17	84	4	81	45	0	3	51	1.17
35097634--35097969	59	5.7	60	80	7	343	36	19	1	41	1.62
35097634--35097884	89	2.8	88	83	7	294	39	17	1	41	1.60
35097772--35098060	117	2.5	118	80	7	313	34	23	0	41	1.60
35097619--35098029	30	14.0	28	74	13	276	36	21	1	41	1.63
35097750--35098121	59	6.3	60	75	11	231	33	23	1	40	1.66
35097811--35098122	117	2.7	116	82	5	310	32	24	2	41	1.67
35097987--35098077	30	3.1	29	77	16	98	36	27	2	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35097871--35098078	29	7.2	28	70	19	108	32	25	1	39	1.65
35097871--35098121	58	4.3	56	78	11	213	31	26	2	39	1.70
35098593--35098696	11	9.0	11	72	16	68	45	1	2	50	1.28
35098592--35098685	6	15.8	6	71	17	72	43	1	3	52	1.24
35098592--35098653	17	3.6	18	80	10	67	46	0	3	50	1.17
35098605--35098684	17	4.9	17	78	9	76	42	1	2	53	1.22
35100666--35100884	29	7.4	30	69	15	111	32	29	3	34	1.75
35100634--35100942	59	5.3	58	85	3	379	33	28	2	35	1.72
35100814--35100949	29	4.6	31	71	18	94	32	29	2	36	1.70
35112737--35112764	13	2.2	13	100	0	56	46	21	17	14	1.84
35113576--35114626	92	11.4	92	95	0	1861	34	16	16	32	1.91
35114880--35114942	6	11.0	6	75	16	62	46	0	3	50	1.17
35114884--35114941	11	5.2	11	76	14	57	46	0	3	50	1.18
35114880--35114942	17	3.7	17	85	4	83	46	0	3	50	1.17
35114916--35114953	17	2.3	17	86	4	51	60	0	0	39	0.97
35115694--35115753	3	19.3	3	83	6	57	56	0	6	36	1.26
35115697--35115751	16	3.5	15	83	9	56	56	0	7	36	1.27
35116813--35117069	30	8.6	30	77	8	238	38	20	1	38	1.64
35116813--35117072	60	4.3	60	84	1	317	38	20	1	38	1.64
35116826--35117079	90	2.8	89	81	7	282	38	18	1	40	1.62
35118289--35118342	26	2.1	26	90	10	85	40	24	1	33	1.66
35119257--35119290	12	2.7	13	86	9	52	76	0	0	23	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35119809--35120061	40	6.4	40	78	5	246	25	14	26	33	1.94
35119809--35120058	118	2.1	119	83	5	310	25	14	26	34	1.94
35120115--35120254	50	2.8	50	83	3	185	22	24	20	33	1.97
35122074--35122601	263	2.0	263	99	0	1047	30	21	12	35	1.91
35132846--35132977	31	4.3	29	78	13	106	34	3	23	37	1.73
35132848--35132976	30	4.3	30	79	9	129	34	3	23	38	1.73
35143748--35143807	17	3.5	17	86	8	86	38	1	3	56	1.26
35145740--35146180	29	15.1	28	69	16	168	36	26	2	34	1.71
35145839--35146061	30	7.7	29	71	13	118	34	26	4	35	1.75
35145813--35146180	117	3.2	116	81	5	352	36	25	2	35	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163