genome.fa.s8.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  82  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22450323--22450378	27	2.1	27	93	0	94	28	8	8	53	1.62
22450285--22450361	41	2.0	36	85	12	100	23	11	3	61	1.47
22456474--22456503	12	2.6	11	90	10	51	10	0	33	56	1.32
22474314--22474372	18	3.3	18	83	9	84	23	22	23	30	1.99
22475075--22475125	21	2.4	21	86	0	66	25	19	19	35	1.95
22475085--22475128	21	2.1	21	91	0	70	29	18	20	31	1.96
22482369--22482416	21	2.3	22	75	10	55	37	14	18	29	1.91
22485076--22485113	18	2.1	19	85	5	51	28	2	2	65	1.19
22485998--22486040	18	2.4	18	88	0	59	58	6	23	11	1.57
22487355--22487382	12	2.3	12	100	0	56	75	0	10	14	1.06
22494593--22494631	21	1.9	20	84	5	51	17	20	17	43	1.88
22506729--22506770	17	2.5	16	85	11	57	61	9	9	19	1.53
22507167--22507217	21	2.4	21	80	12	59	5	35	0	58	1.22
22507181--22507233	17	3.0	19	74	20	53	3	37	1	56	1.28
22517119--22517162	22	2.0	22	86	0	61	20	0	4	75	0.98
22517126--22517177	27	2.0	26	84	3	68	17	3	5	73	1.19
22517119--22517181	32	2.0	31	81	12	74	17	3	6	73	1.18
22519233--22519276	18	2.5	17	77	7	52	61	11	25	2	1.41
22521604--22521665	25	2.5	25	86	5	81	20	19	24	35	1.96
22524383--22524408	12	2.2	12	100	0	52	34	7	15	42	1.75
22525484--22525529	24	1.9	24	82	8	58	41	21	4	32	1.73
22530607--22530663	22	2.5	22	85	2	78	17	7	31	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22530829--22530924	36	2.7	36	96	1	176	20	18	16	43	1.88
22534290--22534505	87	2.5	87	85	5	276	25	24	18	31	1.98
22534290--22534505	44	4.9	44	77	9	235	25	24	18	31	1.98
22546459--22546499	15	2.7	15	82	10	57	7	39	0	53	1.29
22548298--22548351	15	3.5	16	78	12	51	66	5	0	27	1.13
22551693--22551831	25	5.8	26	78	14	140	23	19	10	47	1.79
22551740--22551782	17	2.4	18	92	3	70	23	18	9	48	1.76
22551712--22551805	43	2.2	42	88	1	134	23	18	9	48	1.77
22551694--22551828	68	2.0	68	85	5	184	22	18	10	48	1.78
22555228--22555283	21	2.7	21	83	13	71	30	30	8	30	1.88
22555981--22556031	24	2.1	24	88	0	75	27	19	23	29	1.98
22558216--22558258	18	2.4	18	88	0	59	18	25	27	27	1.98
22559771--22559809	21	1.9	21	89	5	62	28	15	15	41	1.87
22565065--22565105	21	1.9	22	90	5	66	31	19	14	34	1.92
22578405--22578444	21	2.0	21	90	5	64	25	20	15	40	1.90
22582526--22582558	6	5.5	6	89	10	50	0	15	0	84	0.61
22582534--22582564	11	2.9	11	95	4	55	0	16	0	83	0.64
22583115--22583172	17	3.4	17	80	0	62	51	12	13	22	1.74
22583719--22583765	7	6.6	7	79	13	51	76	0	4	19	0.95
22588097--22588145	23	2.1	24	92	3	82	46	16	4	32	1.65
22588913--22588943	9	3.4	9	95	0	53	41	0	38	19	1.51
22592466--22592565	49	2.0	50	96	1	184	37	18	17	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22596564--22596658	35	2.7	33	79	10	100	31	9	18	40	1.83
22602429--22602460	12	2.7	12	100	0	64	40	18	6	34	1.76
22619536--22619611	38	2.0	38	100	0	152	28	7	15	47	1.74
22627846--22627895	17	2.9	17	84	3	55	50	12	18	20	1.78
22638936--22638976	14	2.7	16	85	7	59	65	0	9	24	1.22
22643901--22643942	17	2.6	16	85	14	52	71	0	14	14	1.15
22643901--22643943	16	2.7	16	83	16	54	69	0	13	16	1.19
22648116--22648162	14	3.5	13	78	18	51	78	0	6	14	0.93
22653038--22653077	21	2.0	20	90	5	62	72	0	20	7	1.08
22653097--22653193	15	6.0	16	68	14	65	59	2	26	11	1.42
22655417--22655514	15	6.5	15	68	4	54	26	24	27	21	1.99
22655647--22655690	18	2.4	18	80	0	52	22	29	13	34	1.93
22670554--22670600	21	2.2	21	77	7	51	36	19	19	25	1.95
22680067--22680104	14	2.9	13	88	7	51	73	0	0	26	0.83
22680991--22681217	30	7.6	30	79	5	196	39	21	3	35	1.71
22681001--22681217	60	3.6	60	81	1	238	39	22	3	35	1.70
22681003--22681217	89	2.4	90	81	3	254	39	22	3	34	1.71
22683019--22683059	22	2.0	19	86	13	55	41	0	7	51	1.30
22684659--22684747	24	3.8	24	90	3	144	24	23	26	24	2.00
22684727--22684780	25	2.3	23	81	9	63	20	16	27	35	1.94
22686153--22686224	31	2.3	31	92	0	117	26	19	11	43	1.84
22691126--22691160	15	2.3	15	100	0	70	22	20	17	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22694166--22694229	30	2.1	30	82	0	74	26	28	20	25	1.99
22697972--22698025	25	2.1	26	82	3	65	31	1	9	57	1.41
22700357--22700398	4	11.0	4	92	7	54	28	0	0	71	0.86
22700357--22700404	22	2.2	22	85	14	64	27	0	0	72	0.84
22702551--22702583	15	2.2	15	89	10	50	27	27	21	24	1.99
22711344--22711663	54	6.0	54	89	2	466	34	20	15	30	1.93
22726054--22726334	53	5.3	54	89	1	406	34	22	14	28	1.93
22726062--22726334	107	2.6	107	90	1	413	35	21	13	28	1.92
22730037--22730093	19	3.1	19	82	2	62	33	26	17	22	1.96
22730051--22730100	18	2.7	18	87	3	64	36	22	22	20	1.96
22732271--22732321	25	2.0	25	88	7	77	31	5	3	58	1.40
22732276--22732328	25	2.1	25	82	6	63	33	5	5	54	1.47
22734176--22734230	26	2.1	27	86	10	78	52	10	9	27	1.66
22736061--22736104	23	1.9	23	95	0	79	29	0	2	68	1.02
22736061--22736110	23	2.2	23	88	0	73	32	0	2	66	1.03
22745060--22745089	12	2.6	11	90	10	51	13	0	33	53	1.40
22754457--22754501	19	2.4	19	81	7	56	37	0	4	57	1.19
22782407--22782478	31	2.3	31	92	0	117	27	20	8	43	1.81
22787170--22787335	50	3.3	49	80	6	174	34	18	24	22	1.96
22787361--22787572	39	5.4	39	71	9	160	33	24	16	25	1.95
22787360--22787549	40	4.8	40	72	13	151	33	24	18	23	1.97
22787360--22787572	79	2.7	79	84	0	282	33	23	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22794496--22794551	28	2.0	28	100	0	112	32	21	21	25	1.98
22815030--22815092	15	4.2	15	75	0	54	25	28	23	22	1.99
22815030--22815099	30	2.3	30	82	0	77	25	30	22	21	1.99
22817269--22817315	21	2.2	21	77	7	51	10	31	4	53	1.55
22821381--22822260	437	2.0	437	99	0	1751	36	17	16	30	1.91
22824043--22824373	54	6.2	54	84	2	409	34	19	15	30	1.92
22824043--22824373	108	3.1	108	85	1	452	34	19	15	30	1.92
22826320--22826418	47	2.1	48	98	1	191	30	6	20	43	1.76
22838936--22838979	17	2.6	17	92	7	72	18	22	11	47	1.80
22844469--22844515	21	2.2	21	77	7	51	12	29	4	53	1.58
22847270--22847320	11	4.7	11	83	9	61	0	31	0	68	0.90
22848652--22848690	16	2.4	16	100	0	78	30	10	20	38	1.86
22853517--22853847	54	6.2	54	86	0	441	35	19	14	30	1.91
22858561--22858788	54	4.3	54	86	1	298	34	20	14	30	1.92
22862468--22862510	18	2.3	19	96	4	79	37	27	18	16	1.92
22880264--22880519	127	2.0	126	96	0	467	40	7	11	41	1.69
22880311--22880546	127	1.9	126	89	5	325	41	7	11	38	1.69
22884117--22884293	30	5.9	30	77	9	137	39	22	3	34	1.72
22884148--22884293	59	2.5	60	82	7	174	38	23	4	33	1.76
22884323--22884380	18	3.3	18	77	20	61	25	5	3	65	1.29
22886329--22886400	31	2.3	31	90	0	117	26	20	9	43	1.83
22891129--22891258	49	2.6	49	81	7	145	35	20	24	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22891155--22891291	50	2.8	50	82	3	143	33	19	23	23	1.97
22891318--22891463	39	3.7	39	76	8	143	31	26	17	24	1.97
22891317--22891527	79	2.7	79	85	4	284	32	26	16	25	1.96
22891337--22891486	40	3.8	39	75	9	135	32	26	17	23	1.96
22902220--22902249	5	5.8	5	92	7	51	80	0	20	0	0.72
22904128--22904173	17	2.7	17	82	0	56	26	0	2	71	0.97
22910290--22910314	6	4.2	6	100	0	50	84	0	16	0	0.63
22912621--22912703	30	2.8	29	74	7	69	24	26	21	27	1.99
22916432--22916485	25	2.1	26	82	3	65	31	1	9	57	1.41
22918707--22918753	24	2.0	24	87	8	69	36	0	0	63	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163