genome.fa.s8.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  115  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32230218--32230259	16	2.7	15	82	17	50	28	21	2	47	1.63
32244579--32244650	28	2.7	26	78	8	65	47	1	0	51	1.09
32245185--32245298	40	2.8	40	86	2	167	36	19	21	21	1.95
32245312--32245535	41	5.7	41	78	11	245	31	17	29	20	1.96
32245312--32245502	72	2.5	74	84	8	233	31	17	30	20	1.96
32245339--32245403	31	2.1	31	85	0	85	36	18	24	20	1.94
32245377--32245553	82	2.2	82	83	4	214	31	19	28	20	1.97
32247953--32248225	43	6.4	42	80	3	260	26	19	25	28	1.99
32247953--32248233	86	3.3	84	80	2	319	27	19	25	28	1.98
32261569--32261647	18	4.4	18	85	6	97	21	22	24	31	1.98
32261684--32261773	44	2.0	44	93	0	153	34	11	25	28	1.90
32265869--32265923	24	2.2	26	90	6	87	56	0	1	41	1.10
32266104--32266128	12	2.1	12	100	0	50	64	8	0	28	1.22
32266996--32267061	25	2.7	24	86	9	89	40	0	0	59	0.98
32271976--32272021	22	2.1	22	87	0	65	65	4	0	30	1.12
32274499--32274541	12	3.6	12	74	0	50	69	13	4	11	1.33
32274538--32274620	21	3.7	21	73	10	67	71	14	3	10	1.27
32274461--32274608	56	2.7	56	80	3	147	68	15	4	11	1.33
32274558--32274644	24	3.7	23	74	9	77	72	14	4	8	1.24
32274550--32274644	46	2.1	45	82	9	113	72	15	4	7	1.23
32274594--32274669	39	1.9	39	86	5	109	72	13	5	9	1.26
32275336--32275396	22	2.8	22	85	5	70	65	3	0	31	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32275465--32275532	25	2.5	28	81	11	88	54	0	1	44	1.09
32277351--32277435	20	4.2	20	72	10	66	31	5	14	48	1.67
32281542--32281638	38	2.4	39	79	8	97	32	14	27	24	1.94
32281676--32281877	41	4.9	41	85	1	244	31	16	28	23	1.96
32281677--32281879	82	2.5	82	89	1	291	31	17	28	22	1.96
32281673--32281905	41	5.7	40	82	3	180	31	18	27	23	1.97
32281677--32281911	82	2.9	82	85	4	271	31	18	26	22	1.97
32284282--32284322	21	2.0	21	86	9	59	0	41	14	43	1.45
32287883--32287955	22	3.0	26	68	15	82	35	1	10	52	1.46
32287945--32287973	4	7.5	4	92	7	51	48	0	0	51	1.00
32287915--32288028	34	3.2	34	82	9	147	39	0	11	48	1.45
32287914--32288027	38	3.1	38	81	10	155	38	0	11	49	1.45
32287951--32288178	46	5.4	45	68	19	143	43	0	7	48	1.34
32287924--32288042	38	3.2	37	80	11	147	39	0	10	49	1.38
32288033--32288075	17	2.6	16	85	7	59	58	2	0	39	1.11
32288033--32288075	8	5.2	8	86	5	59	58	2	0	39	1.11
32288102--32288138	4	9.5	4	88	5	58	51	0	0	48	1.00
32287987--32288264	131	2.1	131	83	7	350	43	1	6	48	1.34
32288150--32288211	22	2.9	22	88	7	83	48	0	1	50	1.10
32288172--32288198	14	1.9	14	100	0	54	44	0	0	55	0.99
32288165--32288247	26	3.3	26	80	6	84	44	1	4	49	1.31
32288047--32288273	106	2.2	104	79	9	239	44	0	5	49	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32289349--32289388	20	2.0	20	100	0	80	40	20	5	35	1.74
32290933--32291007	37	2.0	38	84	7	100	4	8	17	70	1.27
32291170--32291212	12	3.5	12	76	17	52	44	4	9	41	1.57
32291170--32291219	25	2.0	25	100	0	100	40	8	8	44	1.63
32293174--32293388	23	9.2	24	85	7	232	10	23	22	44	1.83
32293174--32293388	46	4.6	46	87	5	290	10	23	22	44	1.83
32293174--32293388	69	3.1	68	84	9	265	10	23	22	44	1.83
32293174--32293388	94	2.3	92	85	6	281	10	23	22	44	1.83
32299653--32299802	23	6.4	23	83	6	176	11	23	21	44	1.84
32302254--32302558	41	7.6	40	77	8	278	21	28	19	30	1.97
32302255--32302558	82	3.8	81	79	7	323	21	28	19	30	1.97
32306062--32306202	58	2.4	56	82	8	167	44	2	2	50	1.28
32306282--32306382	44	2.2	46	86	8	136	38	24	3	32	1.74
32306358--32306413	16	3.5	16	87	0	58	32	21	1	44	1.63
32308619--32308684	20	3.1	23	77	18	79	36	10	16	36	1.84
32311748--32311833	21	4.0	22	80	11	108	37	10	16	36	1.83
32311749--32311831	41	2.0	41	95	0	148	36	9	16	37	1.82
32314385--32314424	17	2.4	17	87	8	55	67	2	0	30	1.04
32318645--32318695	24	2.1	24	92	0	84	21	9	9	58	1.58
32318653--32318707	24	2.3	24	87	0	74	25	12	10	50	1.73
32328176--32328219	2	22.0	2	100	0	88	50	0	0	50	1.00
32330213--32330279	18	3.7	18	77	0	62	26	23	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32330198--32330273	36	2.1	36	85	0	98	25	19	21	34	1.96
32340634--32340669	18	2.1	18	89	5	56	41	0	25	33	1.55
32348563--32348701	55	2.6	55	77	10	162	62	2	2	32	1.22
32348721--32348776	25	2.2	26	84	12	80	55	0	1	42	1.10
32349548--32349585	18	2.1	18	90	0	58	50	18	2	28	1.61
32349815--32349880	25	2.7	24	81	9	80	39	0	1	59	1.07
32354804--32354829	12	2.2	12	100	0	52	69	7	0	23	1.14
32354806--32354885	41	2.0	41	90	5	126	65	11	2	21	1.37
32355520--32355573	22	2.4	21	82	11	63	59	1	3	35	1.26
32356473--32356526	20	2.5	22	82	11	58	66	16	3	12	1.38
32356529--32356571	21	2.0	21	81	0	50	72	13	2	11	1.22
32356543--32356588	12	3.8	12	91	0	74	71	17	4	6	1.24
32356473--32356582	24	5.0	21	69	19	55	68	16	3	11	1.34
32357329--32357381	22	2.4	22	84	6	63	60	3	0	35	1.15
32357869--32357917	20	2.4	21	82	3	55	34	2	4	59	1.28
32358091--32358153	27	2.3	27	100	0	126	41	0	9	49	1.35
32363729--32364035	41	7.5	41	71	6	203	30	17	26	25	1.97
32366996--32367081	43	2.0	43	88	4	129	25	19	26	27	1.99
32368066--32368559	244	2.0	244	91	1	792	32	9	14	42	1.79
32371650--32371811	56	2.8	58	85	6	204	45	1	1	51	1.16
32383454--32383525	26	2.7	27	86	6	101	26	18	22	33	1.96
32383507--32383565	24	2.5	24	91	0	91	22	22	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32388488--32388554	20	3.3	20	75	8	64	32	8	10	47	1.69
32388593--32388698	20	5.2	20	77	6	106	43	5	10	40	1.62
32388593--32388698	41	2.6	40	82	5	133	43	5	10	40	1.62
32388792--32388866	20	3.8	20	75	8	73	49	2	6	41	1.43
32390487--32390651	88	1.9	88	87	5	244	33	9	29	27	1.88
32395523--32395585	31	2.0	31	96	0	117	30	22	17	30	1.96
32399957--32400062	35	3.0	35	91	0	167	46	13	13	27	1.80
32400239--32400352	35	3.3	35	78	4	108	40	16	15	27	1.89
32406320--32406355	17	2.2	17	90	5	56	52	8	2	36	1.46
32407537--32407570	14	2.3	15	85	10	52	14	14	50	20	1.78
32415125--32415170	24	1.9	24	90	0	74	47	15	13	23	1.80
32417252--32417335	43	2.0	43	85	0	114	23	15	32	28	1.95
32418414--32418502	17	5.1	17	70	12	72	52	13	13	20	1.73
32418407--32418517	54	2.1	54	100	0	222	52	12	10	24	1.71
32419803--32419877	38	2.0	38	94	0	132	25	17	24	33	1.96
32427258--32427373	48	2.4	48	100	0	232	25	19	17	37	1.93
32429536--32429746	96	2.2	98	79	7	234	21	29	16	32	1.95
32429601--32429758	49	3.3	47	76	5	136	19	27	20	32	1.97
32430040--32430104	32	2.0	33	84	3	87	40	15	9	35	1.79
32430135--32430601	218	2.1	218	100	0	934	34	13	17	34	1.89
32432052--32432097	20	2.3	20	88	7	67	60	2	0	36	1.09
32432952--32433571	125	4.8	126	79	8	665	27	17	21	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32432952--32433571	126	4.8	126	80	7	681	27	17	21	33	1.96
32432844--32433567	391	1.9	391	87	2	1087	28	18	20	33	1.96
32440301--32440326	3	8.7	3	100	0	52	30	0	0	69	0.89
32451397--32451439	2	22.0	2	95	4	79	51	0	0	48	1.00
32451667--32451731	16	4.1	16	80	9	80	50	4	3	41	1.38
32451676--32451727	13	3.7	13	72	18	50	50	5	1	42	1.37
32452468--32452500	18	1.9	17	88	11	50	51	30	0	18	1.46
32453384--32453418	18	1.9	18	88	0	52	20	2	2	74	1.08
32453500--32453659	30	5.3	30	85	5	171	35	21	1	42	1.61
32453500--32453659	60	2.7	61	83	4	200	35	21	1	42	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163