genome.fa.s8.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  137  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37072657--37072716	27	2.2	28	84	3	77	21	21	3	53	1.60
37073715--37073773	26	2.3	26	79	5	66	59	1	1	37	1.18
37073768--37073826	29	2.1	28	84	9	75	64	3	1	30	1.20
37073757--37073826	20	3.5	20	71	11	63	65	2	1	30	1.15
37073902--37073933	16	2.0	16	93	0	55	46	6	0	46	1.27
37075787--37075819	17	2.0	17	88	5	50	48	9	0	42	1.35
37079908--37079944	12	3.1	12	92	0	65	21	27	0	51	1.48
37079908--37079940	6	5.5	6	92	0	57	21	30	0	48	1.50
37083738--37083783	24	1.9	23	86	8	65	54	4	4	36	1.40
37083846--37083879	13	2.6	13	85	0	50	58	11	0	29	1.33
37084822--37084871	14	3.5	14	81	10	57	8	14	0	78	0.97
37084822--37084870	15	3.2	15	80	13	55	8	12	0	79	0.93
37084796--37084869	25	2.9	24	78	10	67	8	14	1	75	1.09
37085802--37085844	6	7.3	6	84	5	52	76	2	4	16	1.05
37089590--37089636	25	2.0	23	87	8	67	57	4	2	36	1.30
37091974--37092075	20	5.1	20	85	0	141	13	17	32	36	1.89
37093302--37093340	14	2.7	15	80	8	53	25	7	15	51	1.70
37099590--37099642	28	1.9	27	84	3	70	33	9	1	54	1.43
37100074--37100107	16	2.1	16	89	10	52	29	0	0	70	0.87
37104151--37104199	22	2.2	23	81	3	55	44	14	0	40	1.45
37105014--37105054	19	2.2	19	91	4	66	46	0	9	43	1.36
37105023--37105064	19	2.3	19	83	4	50	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37105014--37105123	18	6.3	17	70	19	75	49	2	6	41	1.42
37105078--37105123	16	2.8	16	90	6	65	58	4	2	34	1.30
37105150--37105176	8	3.4	8	100	0	54	59	0	0	40	0.98
37109618--37109642	2	12.5	2	100	0	50	48	0	0	52	1.00
37114408--37114458	18	2.9	17	77	5	57	49	1	0	49	1.12
37114394--37114448	25	2.2	25	86	0	74	47	1	0	50	1.11
37115968--37115992	6	4.2	6	100	0	50	68	0	32	0	0.90
37119463--37119507	21	2.1	21	84	8	56	77	4	0	17	0.92
37137530--37137571	18	2.4	17	85	14	59	71	0	0	28	0.86
37148450--37148491	9	4.7	9	78	21	52	64	2	0	33	1.07
37152596--37152643	7	6.3	7	82	17	60	39	14	2	43	1.57
37153598--37153679	17	4.8	17	85	5	103	54	2	1	41	1.21
37153577--37153680	52	2.0	53	90	1	165	51	1	1	44	1.23
37153582--37153680	35	2.8	35	83	6	121	53	2	2	42	1.23
37157976--37158035	30	2.0	30	100	0	120	46	16	6	30	1.73
37158300--37158360	22	2.8	22	82	0	77	8	16	14	60	1.57
37164717--37164754	2	19.0	2	100	0	76	50	0	0	50	1.00
37168831--37168907	34	2.2	35	90	2	120	53	0	18	28	1.45
37171566--37171680	59	2.0	59	86	6	164	40	10	16	33	1.83
37182427--37182488	29	2.2	29	82	2	72	56	1	1	40	1.19
37183535--37183597	28	2.3	27	83	8	74	33	4	1	60	1.27
37183558--37183649	36	2.4	37	87	8	123	32	5	1	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37184221--37184263	22	2.0	22	85	0	59	76	4	6	11	1.13
37184569--37184726	59	2.7	60	80	4	167	25	13	10	50	1.73
37184950--37185055	32	3.5	30	79	11	110	50	5	12	32	1.63
37184950--37185055	28	3.5	29	77	14	99	50	5	12	32	1.63
37185433--37185504	31	2.3	31	81	9	85	51	6	1	40	1.37
37196510--37196543	17	2.0	17	88	11	52	64	2	2	29	1.22
37197356--37197387	12	2.6	13	90	9	50	59	3	0	37	1.13
37209820--37209859	21	1.9	21	85	10	55	72	0	5	22	1.04
37209844--37209914	19	3.9	18	75	14	74	57	0	1	40	1.07
37209826--37209928	38	2.8	36	76	14	95	62	0	1	34	1.13
37213577--37213648	25	2.9	25	81	6	92	43	0	0	56	0.99
37213568--37213645	24	3.2	24	77	13	63	41	0	0	58	0.98
37213586--37213657	22	2.9	25	72	21	62	41	0	0	58	0.98
37213621--37213661	16	2.6	16	77	14	50	36	0	0	63	0.95
37213640--37213678	20	2.0	20	89	0	60	33	0	2	64	1.08
37216010--37216051	20	2.1	19	86	8	57	23	7	16	52	1.68
37226940--37226976	2	18.5	2	100	0	74	51	0	48	0	1.00
37227031--37227068	7	5.4	7	96	0	67	26	13	47	13	1.79
37228337--37228434	49	2.0	49	97	0	187	28	19	10	41	1.84
37228772--37228863	46	2.0	46	95	4	168	36	28	10	23	1.89
37229585--37229803	55	3.9	56	85	5	284	50	13	8	27	1.71
37229585--37229790	113	1.8	113	91	0	340	50	12	8	27	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37233491--37233574	42	2.0	42	83	4	107	29	27	14	28	1.95
37233793--37233831	18	2.2	18	86	4	53	35	7	5	51	1.53
37233949--37233998	21	2.4	22	83	12	61	56	2	2	40	1.22
37238109--37238143	16	2.2	16	89	0	52	25	0	2	71	1.00
37245626--37245773	61	2.4	61	86	1	197	42	13	4	39	1.65
37247133--37247177	18	2.6	17	82	6	56	42	0	2	55	1.12
37251085--37251113	10	2.7	11	94	5	51	0	17	0	82	0.66
37252228--37252274	12	3.9	12	72	10	51	17	19	14	48	1.81
37252360--37252415	23	2.4	23	84	0	76	23	12	19	44	1.84
37260778--37260834	29	2.0	29	83	13	73	33	5	7	54	1.50
37261242--37261322	32	2.6	31	78	2	81	56	9	7	25	1.58
37273667--37273724	6	10.2	6	87	7	77	37	0	0	62	0.96
37273667--37273724	11	5.1	11	87	2	62	37	0	0	62	0.96
37273656--37273727	16	4.3	16	82	8	81	40	0	0	59	0.97
37273650--37273727	23	3.4	23	77	7	79	39	0	1	58	1.06
37274538--37274562	12	2.1	12	100	0	50	48	0	0	52	1.00
37274497--37274555	30	1.9	30	82	3	73	49	3	1	45	1.28
37275570--37275800	61	3.8	59	84	7	259	35	18	2	42	1.64
37275570--37275828	91	2.9	90	82	6	301	35	19	3	42	1.67
37275570--37275800	30	7.6	30	86	5	270	35	18	2	42	1.64
37276180--37276204	13	1.9	13	100	0	50	40	8	40	12	1.72
37287395--37288164	183	4.2	182	91	2	1175	34	19	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37287395--37288164	92	8.4	91	89	1	1171	34	19	17	28	1.95
37288004--37288215	51	4.4	49	73	16	194	36	18	16	27	1.93
37287828--37288446	326	1.9	325	88	1	945	35	17	17	28	1.93
37288096--37288215	51	2.4	51	97	1	224	38	17	16	27	1.91
37287917--37288397	234	2.1	235	90	1	750	35	18	17	28	1.93
37288150--37288447	91	3.3	91	86	0	425	34	16	18	30	1.93
37288004--37288307	142	2.1	144	90	1	479	35	18	16	29	1.93
37288731--37288777	17	2.8	16	90	6	67	40	0	2	57	1.11
37289592--37289616	12	2.1	12	100	0	50	48	0	0	52	1.00
37290633--37290831	30	6.6	30	86	6	244	38	21	1	39	1.60
37290633--37290830	89	2.2	91	89	3	294	38	21	1	38	1.60
37290633--37290854	30	7.4	30	85	5	209	37	21	1	39	1.62
37290633--37290854	59	3.7	59	82	4	252	37	21	1	39	1.62
37290633--37290860	89	2.5	90	85	4	282	37	22	1	38	1.65
37290807--37290944	60	2.3	58	79	9	154	28	28	5	37	1.80
37290807--37290977	29	5.9	28	72	11	98	28	29	7	35	1.83
37292219--37292248	16	1.9	15	93	6	51	40	16	3	40	1.65
37292901--37292934	18	1.9	18	88	5	52	50	2	0	47	1.16
37297269--37297322	22	2.4	22	93	3	90	33	9	18	38	1.83
37307577--37307610	18	1.9	18	88	5	52	11	17	2	67	1.34
37308888--37308928	16	2.4	16	88	8	55	65	0	2	31	1.05
37311423--37311456	17	1.9	17	88	5	50	73	0	2	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37318001--37318074	15	4.8	16	79	15	68	0	40	0	59	0.97
37317998--37318070	25	2.7	28	83	8	89	0	42	0	57	0.98
37318035--37318074	2	20.5	2	89	5	64	0	45	0	55	0.99
37325976--37326009	17	2.1	16	88	5	50	52	0	0	47	1.00
37327865--37328058	97	2.0	97	85	2	264	37	15	19	27	1.93
37328460--37328600	29	4.9	29	84	8	164	35	3	26	34	1.74
37328448--37328632	58	3.2	56	81	7	194	35	2	26	35	1.71
37328617--37328673	30	1.9	30	85	7	80	36	7	22	33	1.81
37329025--37329086	27	2.3	27	91	2	97	14	11	43	30	1.80
37330504--37330582	17	4.7	17	75	4	63	55	3	2	37	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163