genome.fa.s8.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  130  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35669841--35669898	12	4.2	12	73	26	53	62	0	3	34	1.12
35670315--35670406	17	5.3	17	76	3	85	58	7	1	32	1.33
35672342--35672417	17	4.4	17	70	16	50	38	2	6	52	1.41
35672388--35672453	17	3.9	16	76	9	69	39	4	9	46	1.56
35672354--35672463	34	3.2	35	76	5	98	39	3	9	48	1.53
35674360--35674449	28	3.1	29	83	6	110	35	30	1	33	1.65
35674364--35674857	29	17.0	28	72	12	243	34	23	3	37	1.73
35674401--35674772	88	4.2	88	79	7	323	35	22	3	38	1.71
35674380--35674856	59	8.2	59	78	9	229	34	23	3	38	1.74
35674488--35674880	59	6.8	59	80	7	353	34	23	4	37	1.75
35676074--35676124	25	2.0	25	100	0	102	64	7	7	19	1.44
35680857--35680912	29	1.9	29	82	7	69	51	3	25	19	1.62
35680857--35680915	30	2.0	29	83	3	73	50	3	25	20	1.63
35681445--35681475	2	15.5	2	100	0	62	48	0	51	0	1.00
35681516--35681600	20	4.3	20	66	19	63	58	11	0	29	1.33
35689904--35690112	26	8.0	25	71	7	114	27	17	27	27	1.98
35692041--35692224	41	4.4	41	82	5	217	38	12	23	25	1.90
35692041--35692224	84	2.2	82	82	5	210	38	12	23	25	1.90
35697090--35697175	17	5.1	17	84	5	120	55	4	1	38	1.28
35697466--35698226	76	10.0	76	95	1	1300	31	17	17	33	1.93
35710386--35710460	38	2.0	38	84	5	98	37	6	26	29	1.82
35710424--35710892	59	7.9	59	86	4	597	36	3	28	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35710471--35710802	30	11.2	29	62	20	89	35	3	28	33	1.74
35710560--35710888	29	11.2	29	63	21	123	37	3	27	31	1.73
35710841--35710925	40	2.1	41	86	8	129	38	2	30	28	1.70
35710853--35710932	40	2.0	40	95	0	142	36	1	31	31	1.66
35712753--35712807	17	3.2	16	82	10	65	54	5	1	38	1.34
35715736--35715768	17	1.9	17	93	0	57	45	0	3	51	1.16
35717635--35717715	30	2.7	30	90	0	117	37	19	4	38	1.74
35717695--35717944	88	2.8	84	80	11	252	39	25	1	34	1.64
35717695--35717944	59	4.3	57	80	8	263	39	25	1	34	1.64
35717630--35717956	29	11.1	28	79	10	219	36	25	2	35	1.69
35717948--35718059	58	1.9	58	85	3	154	31	23	10	34	1.89
35717948--35718042	29	3.3	29	78	0	127	29	25	10	34	1.89
35718286--35718461	96	1.8	96	85	2	246	28	16	13	40	1.87
35729887--35731734	201	9.3	201	88	3	2646	34	18	23	24	1.96
35729887--35731734	394	4.6	395	87	4	2531	34	18	23	24	1.96
35729891--35731734	595	3.1	595	90	1	2827	34	18	23	24	1.96
35732035--35732128	17	5.5	17	80	2	116	41	0	3	55	1.16
35732035--35732128	6	16.3	6	71	12	63	41	0	3	55	1.16
35734015--35734250	30	7.9	30	81	5	210	35	25	3	35	1.74
35734003--35734309	59	5.2	60	81	7	265	34	25	4	35	1.77
35734019--35734324	89	3.5	88	81	8	320	35	24	4	34	1.77
35751228--35751621	48	8.2	48	79	9	410	38	21	26	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35751228--35751698	96	4.9	95	77	9	454	37	21	26	14	1.92
35751115--35751698	144	4.0	145	87	2	798	38	21	25	15	1.93
35752210--35752252	17	2.5	17	88	3	59	39	2	2	55	1.25
35752223--35752280	17	3.5	16	83	6	71	39	3	3	53	1.35
35753036--35753060	13	1.9	13	100	0	50	64	0	4	32	1.12
35754158--35754582	29	14.6	29	70	16	209	36	23	3	36	1.72
35754148--35754586	59	7.5	58	77	9	362	36	23	3	36	1.73
35754159--35754451	87	3.4	88	77	15	263	37	23	2	36	1.68
35755951--35756083	51	2.6	52	80	1	142	24	20	28	26	1.99
35755952--35756116	26	6.4	26	72	8	104	24	18	30	27	1.98
35758021--35758204	41	4.4	41	84	5	226	36	11	25	26	1.90
35758021--35758204	84	2.2	82	83	3	226	36	11	25	26	1.90
35762468--35762534	29	2.2	29	87	10	91	20	8	32	37	1.84
35765204--35765428	41	5.4	41	83	2	225	36	8	27	28	1.86
35766088--35766164	21	3.7	21	70	13	59	38	11	19	29	1.87
35773487--35773599	59	1.9	58	85	5	156	38	2	20	38	1.67
35773487--35773599	29	3.9	30	87	2	151	38	2	20	38	1.67
35773486--35773682	30	6.7	29	77	9	159	37	3	22	36	1.72
35775436--35776058	38	15.9	38	73	9	427	25	17	23	33	1.96
35775504--35776058	116	4.8	115	80	9	527	26	16	23	33	1.96
35775436--35776058	78	7.9	76	78	9	542	25	17	23	33	1.96
35776225--35776477	49	5.2	49	73	7	176	20	28	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35776147--35776472	98	3.4	96	83	5	361	21	26	16	35	1.94
35776881--35777077	106	1.8	106	86	5	286	38	10	21	29	1.87
35777391--35777433	15	2.8	15	79	13	52	0	23	0	76	0.78
35777392--35777438	18	2.6	18	86	6	69	0	19	0	80	0.70
35777392--35777449	18	3.2	17	80	9	62	3	15	0	81	0.83
35778332--35778357	9	2.9	9	100	0	52	0	19	0	80	0.71
35778309--35778358	21	2.4	22	83	9	61	0	20	0	80	0.72
35782837--35782949	30	3.8	30	80	0	127	38	0	23	37	1.61
35782828--35782974	60	2.4	58	79	8	159	38	2	23	35	1.67
35782828--35782998	60	2.9	57	75	11	155	40	2	20	36	1.68
35784186--35784240	27	2.1	25	86	6	74	12	0	40	47	1.42
35784800--35785091	38	7.4	39	81	9	243	27	16	26	30	1.96
35784773--35785086	78	3.9	79	84	5	321	27	17	24	31	1.97
35784800--35785098	80	3.8	80	84	4	304	27	16	26	30	1.96
35785197--35785606	49	8.4	49	73	2	295	21	29	14	34	1.93
35785181--35785602	98	4.3	98	86	2	517	21	28	15	34	1.94
35785197--35785602	196	2.1	196	87	1	582	21	29	15	34	1.93
35786526--35786573	24	2.0	24	88	12	71	4	20	0	75	0.97
35786522--35786577	18	3.2	17	72	10	51	3	17	0	78	0.89
35786549--35786586	20	1.9	20	84	10	51	7	10	0	81	0.87
35787422--35787450	11	2.6	11	100	0	58	0	24	0	75	0.80
35787408--35787453	14	3.4	14	77	16	53	0	21	0	78	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35787406--35787465	28	2.2	28	82	11	72	1	25	0	73	0.93
35791867--35791990	29	4.2	30	83	7	148	33	2	24	40	1.68
35794085--35794148	20	3.2	20	70	12	60	40	32	7	18	1.80
35794235--35794269	16	2.1	16	89	10	52	54	0	0	45	0.99
35794314--35794359	25	1.9	24	86	8	67	26	2	8	63	1.35
35796203--35796252	23	2.2	23	81	0	55	72	16	4	8	1.24
35796202--35796279	35	2.2	35	79	0	84	70	15	5	8	1.30
35796248--35796294	23	2.1	21	88	7	67	68	17	6	8	1.37
35796215--35796294	35	2.3	35	82	0	97	68	16	6	8	1.36
35800030--35800069	19	2.1	19	90	9	64	25	5	0	70	1.08
35800055--35800098	18	2.3	19	88	7	63	38	0	4	56	1.20
35810298--35810336	17	2.3	17	86	0	51	17	10	25	46	1.80
35811351--35811395	21	2.1	22	83	4	56	55	2	0	42	1.12
35812526--35812732	29	7.1	29	75	12	140	38	23	3	35	1.71
35812526--35812721	59	3.4	59	78	6	186	39	21	3	35	1.71
35812500--35812732	30	7.9	29	76	9	161	38	21	4	35	1.74
35812697--35812909	59	3.6	56	73	6	165	33	26	4	35	1.76
35818525--35818568	12	3.4	12	87	9	52	79	2	18	0	0.83
35819857--35820021	50	3.3	50	71	9	156	38	21	27	12	1.90
35819808--35819973	51	3.3	51	75	8	185	39	21	27	12	1.88
35819801--35820045	101	2.4	101	88	0	357	37	22	26	13	1.91
35820176--35821232	92	11.5	92	96	0	1859	31	15	18	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35821335--35821435	39	2.6	39	84	1	114	24	32	17	24	1.97
35821830--35821888	17	3.5	17	79	11	68	38	0	5	55	1.22
35821836--35821874	5	7.2	5	83	16	51	38	0	5	56	1.22
35821819--35821874	11	5.0	11	81	16	62	39	1	3	55	1.28
35822585--35822614	15	2.1	14	93	6	51	56	0	0	43	0.99
35822584--35822626	21	2.0	22	86	4	61	55	2	0	41	1.12
35823761--35824002	29	8.2	29	78	9	172	39	20	4	36	1.72
35823761--35823955	29	6.6	29	80	8	180	38	20	3	36	1.70
35823829--35823955	59	2.2	59	84	8	163	37	21	3	37	1.72
35823976--35824155	59	3.1	57	83	7	227	32	25	7	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163