genome.fa.s8.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  34  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8984360--8984512	71	2.2	71	84	7	204	47	0	3	48	1.25
8987948--8988030	44	1.9	43	85	11	116	32	0	15	51	1.44
8988201--8988238	18	2.1	18	85	9	51	26	10	13	50	1.73
8989253--8989281	10	2.7	11	89	10	51	65	0	0	34	0.93
8994658--8994697	5	8.0	5	82	0	53	27	0	0	72	0.85
8997074--8997117	21	2.1	21	95	4	81	56	13	0	29	1.38
8997198--8997262	30	2.1	32	83	13	82	67	10	0	21	1.20
8997679--8997737	27	2.3	25	88	8	84	35	37	11	15	1.84
9023362--9023446	31	2.7	31	88	0	125	42	5	21	30	1.76
9028445--9028481	17	2.2	17	95	0	65	21	21	16	40	1.91
9031318--9031349	16	2.0	16	100	0	64	43	12	12	31	1.80
9035024--9035082	31	2.0	30	83	6	75	37	6	1	54	1.37
9035210--9035247	17	2.2	18	90	4	60	18	5	0	76	0.97
9037638--9037677	16	2.5	16	100	0	80	25	5	20	50	1.68
9044918--9045446	126	4.2	126	87	1	634	24	29	12	32	1.93
9047457--9047506	21	2.3	23	80	13	61	58	6	8	28	1.51
9050247--9050280	6	5.7	6	96	0	50	50	26	17	5	1.69
9056151--9056224	33	2.3	33	79	6	80	64	0	0	35	0.94
9060804--9060856	12	4.5	12	76	4	54	62	1	1	33	1.17
9066457--9066521	21	3.0	21	76	14	60	73	3	7	15	1.18
9066466--9066521	23	2.5	21	76	18	60	73	3	8	14	1.21
9067230--9067260	5	6.2	5	92	0	53	41	0	58	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9073451--9073484	2	17.0	2	100	0	68	50	0	0	50	1.00
9077929--9078039	48	2.3	48	92	0	177	49	16	15	18	1.80
9084832--9084873	22	2.0	21	85	4	57	47	2	0	50	1.14
9086196--9086229	12	2.9	11	87	12	50	85	2	2	8	0.80
9096924--9097132	75	2.8	75	95	0	364	21	23	26	28	1.99
9099164--9099199	18	1.9	19	88	5	56	25	8	0	66	1.19
9103102--9103178	4	19.2	4	80	0	64	23	9	19	48	1.77
9107897--9107927	12	2.6	12	89	0	53	16	58	0	25	1.38
9114872--9114921	21	2.4	21	89	0	82	44	30	14	12	1.81
9114936--9114975	18	2.2	18	86	0	53	32	37	10	20	1.85
9116063--9116111	3	16.7	3	87	12	75	0	30	0	69	0.89
9121512--9121539	14	2.0	14	100	0	56	42	7	14	35	1.73
9121740--9121800	29	2.1	29	81	6	70	44	1	4	49	1.33
9122006--9122041	16	2.2	16	90	0	54	30	22	5	41	1.76
9126669--9126729	11	5.4	11	73	13	52	49	1	0	49	1.10
9126669--9126729	6	10.7	6	73	16	58	49	1	0	49	1.10
9126669--9126727	17	3.5	17	83	0	82	47	1	0	50	1.11
9127523--9127559	13	2.9	13	92	4	58	67	0	0	32	0.91
9127821--9127861	20	2.0	20	86	9	57	48	0	21	29	1.50
9128727--9128970	29	8.5	29	75	12	191	38	25	4	32	1.75
9128727--9129091	58	6.3	58	73	13	179	35	25	4	34	1.78
9128922--9129119	29	6.8	29	70	19	92	31	26	5	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9129015--9129133	28	4.1	29	74	16	113	37	26	3	31	1.73
9139748--9139780	16	1.9	18	88	11	52	57	3	0	39	1.14
9139795--9139829	16	2.2	16	94	0	61	60	0	5	34	1.21
9139821--9139872	19	2.7	20	85	8	72	63	1	0	34	1.06
9139821--9139893	10	7.3	10	74	10	60	67	4	0	28	1.09
9139702--9139872	9	18.9	9	69	17	97	59	2	2	35	1.25
9140283--9140334	9	5.6	9	75	8	50	32	0	0	67	0.91
9140304--9140335	11	3.1	11	86	13	50	37	0	0	62	0.95
9140301--9140345	20	2.2	21	84	7	58	33	2	2	62	1.20
9140329--9140376	20	2.3	21	85	3	62	29	2	6	62	1.31
9140283--9140373	21	4.8	17	72	18	58	30	1	3	64	1.16
9140392--9140511	9	13.0	9	71	19	79	31	1	2	64	1.17
9140398--9140466	26	2.6	27	79	9	70	33	1	2	62	1.19
9140398--9140466	8	7.9	8	73	22	50	33	1	2	62	1.19
9140290--9140493	19	10.7	19	66	15	73	32	1	3	61	1.23
9141824--9142047	58	3.8	59	73	9	215	29	21	16	32	1.96
9141824--9142045	60	3.8	60	74	9	206	29	22	17	31	1.96
9141823--9142061	118	2.1	115	88	4	345	28	20	17	33	1.96
9142094--9142306	62	3.5	61	80	12	251	28	22	15	33	1.95
9142513--9142688	60	3.0	59	77	7	178	31	15	22	30	1.95
9145619--9145668	17	2.9	17	72	19	50	74	2	0	24	0.93
9146071--9146110	6	6.7	6	100	0	80	17	0	32	50	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9147812--9147883	35	2.1	35	100	0	144	44	11	22	22	1.84
9156845--9157091	127	1.9	127	82	7	311	24	15	16	43	1.86
9158131--9158168	15	2.6	15	83	4	51	28	0	2	68	1.03
9159368--9159418	24	2.1	24	88	0	75	23	9	9	56	1.61
9175251--9175283	17	1.9	17	93	0	57	12	24	27	36	1.91
9175439--9175518	40	2.0	40	97	0	151	25	10	11	53	1.67
9180679--9180709	8	3.9	8	95	0	53	54	9	0	35	1.33
9181717--9181757	20	2.0	20	95	0	73	24	24	9	41	1.85
9184255--9184308	16	3.4	16	73	12	58	11	16	3	68	1.33
9185061--9185104	20	2.1	21	84	12	56	52	2	0	45	1.13
9186831--9186862	3	11.3	3	87	12	50	65	0	0	34	0.93
9186810--9186845	18	1.9	18	88	5	54	63	8	0	27	1.23
9187641--9187764	23	5.4	23	76	8	101	45	20	21	12	1.84
9192731--9192771	20	2.1	19	86	13	57	73	4	2	19	1.13
9192731--9192771	19	2.1	20	86	4	57	73	4	2	19	1.13
9203152--9203341	89	2.2	87	80	6	215	26	6	14	52	1.66
9206712--9206752	4	9.8	4	84	10	55	48	0	2	48	1.14
9206712--9206752	13	3.2	13	83	10	50	48	0	2	48	1.14
9206713--9206769	21	2.7	20	82	15	62	47	1	1	49	1.22
9208435--9208522	27	3.2	27	76	12	90	25	10	31	32	1.89
9208447--9208696	59	4.3	56	77	11	179	34	5	25	34	1.80
9208447--9208637	27	6.7	27	69	16	109	34	6	26	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9208479--9208727	59	4.2	57	76	15	190	35	5	23	35	1.78
9208624--9208727	30	3.5	30	81	6	113	36	3	20	39	1.71
9208452--9208786	29	11.5	29	71	13	140	35	5	23	35	1.77
9208644--9208793	59	2.6	58	83	2	174	34	4	22	38	1.73
9208595--9208795	30	6.8	29	67	13	108	35	4	22	36	1.75
9210741--9210801	27	2.3	27	85	0	77	52	3	1	42	1.27
9210761--9210800	16	2.4	17	91	4	64	57	2	0	40	1.12
9210764--9210816	27	2.0	27	85	7	72	56	7	0	35	1.28
9213238--9213287	25	2.0	25	100	0	100	28	28	4	40	1.74
9216840--9216928	43	2.1	42	83	8	108	23	21	19	35	1.95
9219078--9219106	2	15.0	2	92	7	51	48	0	0	51	1.00
9231046--9231096	26	2.0	26	88	7	77	50	9	11	27	1.70
9252380--9252409	3	10.0	3	92	0	51	33	3	0	63	1.11
9253914--9253988	38	2.0	38	97	2	143	36	8	13	42	1.73
9258588--9258748	86	1.9	86	83	5	209	40	15	9	33	1.80
9261393--9261554	58	2.8	56	83	11	188	50	1	1	46	1.20
9265138--9265324	59	3.2	59	95	0	329	28	8	28	34	1.85
9267253--9267283	16	1.9	16	93	0	53	51	9	12	25	1.70
9267830--9267859	7	4.4	7	91	8	53	13	13	0	73	1.10
9267830--9267859	13	2.2	14	94	5	53	13	13	0	73	1.10
9267833--9267964	57	2.3	58	84	7	171	28	19	3	47	1.67
9292844--9292871	8	3.5	8	100	0	56	25	0	35	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9293158--9293239	41	2.0	41	92	0	137	4	30	13	51	1.62
9294124--9294160	18	2.1	18	100	0	74	29	27	5	37	1.79
9298188--9298302	60	1.9	60	89	0	176	37	2	26	33	1.70
9298181--9298326	60	2.4	60	78	8	163	35	4	26	34	1.75
9299056--9299096	22	2.0	21	85	9	57	24	2	7	65	1.30
9299310--9299374	28	2.3	27	80	12	78	35	4	1	58	1.28
9299996--9300034	17	2.3	17	86	0	60	53	2	0	43	1.14
9301784--9301854	31	2.4	29	88	4	97	39	4	0	56	1.19
9301782--9301852	11	6.5	11	73	15	58	39	4	0	56	1.19
9301831--9301865	17	2.1	17	88	0	52	45	2	0	51	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163