genome.fa.s8.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  97  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27488961--27489014	25	2.2	25	89	0	81	40	3	0	55	1.17
27488979--27489098	28	4.1	30	71	18	83	44	0	1	53	1.16
27493906--27493945	21	1.9	21	89	0	62	35	10	17	37	1.83
27494851--27494925	17	4.5	17	84	3	98	36	1	5	57	1.30
27494851--27494925	33	2.2	34	88	2	107	36	1	5	57	1.30
27496671--27497011	30	11.7	29	75	12	234	37	24	2	35	1.68
27496699--27497036	116	2.9	116	79	8	323	35	24	2	36	1.69
27497107--27497154	14	3.3	15	82	11	64	18	6	4	70	1.25
27497277--27497470	97	2.0	97	90	2	309	29	19	14	36	1.91
27504631--27504658	14	2.0	14	100	0	56	42	14	14	28	1.84
27510844--27510889	24	1.9	24	82	8	58	45	17	10	26	1.81
27525860--27525949	21	4.2	21	82	10	92	7	1	24	66	1.25
27525911--27525959	21	2.3	21	89	6	73	8	2	22	67	1.28
27525854--27525941	3	29.7	3	76	2	79	6	1	26	65	1.24
27525970--27526008	18	2.2	18	85	0	51	12	7	12	66	1.43
27526039--27526145	3	35.7	3	77	3	90	7	1	25	65	1.29
27526037--27526176	9	15.9	9	71	15	69	10	2	22	64	1.36
27526039--27526176	12	11.2	12	74	7	82	10	2	23	64	1.35
27526234--27526284	21	2.4	21	76	0	57	9	7	23	58	1.56
27533433--27533538	19	5.6	19	81	2	115	29	19	27	23	1.98
27533433--27533538	38	2.8	39	81	5	128	29	19	27	23	1.98
27535273--27535299	11	2.5	11	100	0	54	33	7	0	59	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27536655--27536770	33	3.5	32	71	11	83	15	6	19	57	1.60
27536649--27536701	27	2.0	27	88	0	79	16	7	15	60	1.57
27536649--27536723	27	2.8	27	80	11	75	17	5	17	60	1.54
27536679--27536788	33	3.3	33	69	9	98	12	5	21	60	1.53
27536814--27536869	21	2.7	21	76	15	53	16	1	19	62	1.41
27536933--27536985	21	2.5	20	76	11	52	18	3	15	62	1.47
27536963--27537132	15	11.1	15	65	13	78	15	5	22	55	1.60
27536972--27537051	12	6.7	12	76	0	61	12	3	28	55	1.54
27537107--27537192	18	4.8	18	68	21	54	10	6	23	59	1.55
27537111--27537167	21	2.7	20	86	10	78	8	8	24	57	1.57
27537156--27537200	18	2.5	18	82	7	56	13	2	20	64	1.38
27537505--27537594	3	30.3	3	77	6	58	12	0	23	64	1.27
27537502--27537570	24	2.9	24	75	0	66	17	0	20	62	1.33
27537662--27537747	27	3.3	26	75	13	79	11	8	24	55	1.62
27537768--27537792	12	2.1	12	100	0	50	16	8	16	60	1.58
27537870--27537918	15	3.3	15	79	0	62	12	6	20	61	1.52
27537872--27537924	27	2.0	27	84	0	70	13	7	18	60	1.56
27537840--27537931	30	3.0	30	79	4	94	13	6	20	59	1.55
27537744--27537972	18	12.9	18	64	14	64	14	4	20	59	1.52
27538060--27538094	9	3.9	9	88	0	52	14	0	31	54	1.40
27538178--27539976	3	604.3	3	68	7	266	10	6	23	60	1.51
27538220--27538263	22	2.0	22	81	0	52	2	4	22	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27538488--27538618	50	2.7	49	85	3	156	7	2	23	66	1.29
27539367--27539413	14	3.4	14	88	5	60	0	0	29	70	0.88
27539367--27539426	23	2.6	23	86	5	77	1	1	28	68	1.09
27539373--27539410	20	1.9	20	88	0	58	0	0	28	71	0.87
27541958--27542047	15	5.9	15	72	14	60	14	5	24	55	1.60
27542072--27542194	24	5.2	24	70	5	99	6	10	26	56	1.57
27542012--27542152	3	47.0	3	70	2	59	9	6	24	58	1.53
27542110--27542212	42	2.4	44	81	4	129	9	9	26	54	1.64
27542187--27542319	69	1.9	69	83	6	171	13	9	21	54	1.67
27542336--27542448	60	1.9	60	83	3	147	12	8	16	61	1.54
27542584--27544040	18	81.4	18	63	16	131	10	7	22	59	1.56
27542584--27542635	3	17.0	3	78	11	52	1	3	26	67	1.18
27542584--27543355	15	51.3	15	65	15	168	9	8	22	59	1.55
27542853--27542945	48	1.9	48	88	0	141	10	4	21	63	1.43
27542755--27542923	3	56.7	3	70	5	83	6	5	24	63	1.40
27543081--27543405	6	54.2	6	71	2	143	8	7	25	58	1.53
27543598--27543662	33	2.0	33	81	6	78	12	6	24	56	1.58
27543624--27543763	57	2.5	57	80	5	149	14	7	22	55	1.64
27543751--27543857	51	2.1	51	85	0	142	14	4	22	57	1.56
27543968--27544045	39	2.0	39	82	5	95	7	3	21	66	1.33
27543979--27544070	27	3.4	27	78	4	105	8	2	23	65	1.32
27543978--27544102	33	3.9	31	74	14	85	10	4	23	61	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27544019--27544100	15	5.5	15	73	16	62	12	7	23	57	1.60
27544058--27544102	18	2.5	18	88	0	63	11	11	22	55	1.66
27543667--27544067	3	133.7	3	67	3	72	12	5	23	58	1.54
27544232--27544273	21	2.0	21	86	9	59	11	4	28	54	1.57
27544268--27544327	18	3.2	18	75	13	66	10	13	18	58	1.62
27544269--27544332	21	3.2	20	71	13	60	10	12	18	57	1.63
27544292--27544405	15	7.4	15	73	9	68	11	7	24	57	1.59
27544421--27544534	15	7.4	15	70	9	59	54	26	7	11	1.63
27544502--27544548	21	2.2	21	81	7	60	59	21	8	10	1.57
27544506--27544550	18	2.5	18	77	0	54	60	20	8	11	1.57
27544674--27544724	21	2.4	21	80	0	57	60	23	5	9	1.50
27544768--27544912	21	6.6	21	74	13	105	63	24	4	6	1.39
27544810--27545126	12	26.2	12	67	14	89	59	24	5	10	1.51
27544802--27545154	15	23.5	15	68	2	116	58	24	5	10	1.52
27544768--27545286	24	21.4	24	66	8	109	57	23	6	11	1.57
27544838--27544908	9	7.9	9	82	0	70	70	25	1	2	1.09
27545032--27545126	21	4.7	21	72	7	61	60	24	5	10	1.50
27545003--27545154	18	8.5	17	68	20	78	57	25	5	11	1.54
27545045--27545151	51	2.1	51	87	0	151	57	24	5	13	1.58
27545145--27545220	33	2.3	33	84	8	93	56	23	9	10	1.62
27545249--27545289	18	2.3	18	95	0	73	58	24	7	9	1.55
27545308--27545352	15	3.0	15	84	9	56	60	26	4	8	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27545535--27545811	6	46.2	6	70	1	99	58	24	7	8	1.54
27545535--27545811	9	30.8	9	66	2	99	58	24	7	8	1.54
27545511--27545601	27	3.3	27	71	8	65	58	25	6	9	1.54
27545570--27545811	21	11.2	21	68	13	89	59	23	7	9	1.54
27545519--27545811	18	15.3	18	68	17	110	58	24	8	8	1.56
27545671--27545793	15	7.8	15	71	10	84	57	25	7	9	1.56
27545676--27545757	33	2.6	31	86	5	112	58	21	8	10	1.59
27545671--27545793	33	3.8	33	74	3	108	57	25	7	9	1.56
27545817--27545857	21	2.0	21	86	9	59	63	21	9	4	1.44
27545768--27545900	62	2.2	61	98	1	257	57	21	9	10	1.61
27545941--27545980	21	1.9	21	84	0	53	62	17	2	17	1.44
27546075--27546204	3	43.7	3	75	7	86	62	30	4	3	1.31
27546191--27546273	36	2.4	35	82	6	98	56	20	12	10	1.65
27546248--27546277	9	3.3	9	90	0	51	60	23	6	10	1.52
27546221--27546465	15	15.6	15	68	13	91	62	19	7	10	1.51
27546323--27546408	33	2.6	33	81	1	111	69	16	4	9	1.31
27546427--27546530	3	34.7	3	75	0	73	59	28	3	7	1.43
27546436--27546506	21	3.4	21	92	0	106	60	26	4	8	1.44
27546539--27546582	18	2.4	18	96	0	79	56	20	11	11	1.64
27546704--27546839	69	2.0	69	82	5	168	55	22	8	13	1.65
27546796--27546863	21	3.4	21	76	12	79	58	26	11	2	1.47
27546874--27546948	3	25.0	3	77	0	78	60	30	5	4	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27546832--27546938	24	4.5	24	69	0	79	57	27	9	6	1.55
27546894--27546992	18	5.5	18	79	4	74	60	24	6	9	1.49
27549187--27549224	19	2.0	19	100	0	76	47	5	26	21	1.71
27556326--27556354	12	2.4	12	100	0	58	72	0	0	27	0.85
27556818--27556852	7	5.0	7	92	0	61	0	25	28	45	1.54
27561510--27561598	6	15.2	6	79	17	89	46	2	0	51	1.13
27561510--27561583	17	4.6	16	85	11	107	41	2	0	55	1.14
27561517--27561587	37	1.9	36	86	11	99	42	2	0	54	1.14
27561499--27561596	11	8.5	11	74	12	72	44	2	1	52	1.19
27561499--27561596	17	6.0	17	76	9	96	44	2	1	52	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163