genome.fa.s8.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  116  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32456579--32456657	38	2.1	38	87	2	113	54	5	6	34	1.48
32458868--32459340	236	2.0	236	91	2	763	30	12	12	44	1.79
32463857--32464374	275	1.9	272	91	2	840	32	18	19	29	1.95
32466123--32466192	23	3.0	23	100	0	140	61	0	8	30	1.26
32466126--32466187	12	5.3	12	71	21	60	61	0	8	30	1.25
32466534--32466590	29	2.0	27	93	6	96	61	3	3	31	1.30
32466813--32466852	21	2.0	21	90	9	66	47	10	0	42	1.37
32472650--32472745	42	2.3	42	92	0	156	28	8	30	33	1.86
32474014--32474075	25	2.4	26	75	5	72	33	29	16	20	1.94
32476857--32476905	20	2.5	20	82	0	62	30	10	28	30	1.90
32479142--32479338	23	8.5	22	80	13	143	11	23	21	43	1.85
32479142--32479290	23	6.4	24	88	6	148	11	22	22	43	1.85
32479163--32479289	46	2.7	46	91	2	200	11	21	22	44	1.85
32479142--32479338	69	2.8	68	83	10	220	11	23	21	43	1.85
32480741--32480885	27	5.4	26	70	14	89	32	13	24	29	1.94
32494520--32494656	40	3.4	40	75	2	123	26	15	18	39	1.91
32496734--32496776	22	1.9	23	85	4	61	32	0	6	60	1.23
32496785--32496833	17	2.9	18	73	11	50	28	2	2	67	1.13
32496784--32496879	9	10.8	9	71	11	56	30	1	2	66	1.10
32496841--32496879	19	2.0	20	90	5	62	30	0	0	69	0.89
32497343--32497396	15	3.4	16	75	12	58	48	1	0	50	1.11
32499417--32499467	25	2.0	25	100	0	102	47	23	7	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32505774--32505812	6	6.5	6	93	0	69	20	0	64	15	1.30
32507676--32507714	18	2.2	18	85	0	51	25	0	2	71	0.98
32508336--32508369	17	2.0	17	88	0	50	29	0	2	67	1.05
32508995--32509033	12	3.2	12	82	7	51	64	2	0	33	1.08
32514908--32514941	16	2.2	15	89	5	50	35	2	0	61	1.11
32515130--32515162	2	16.5	2	100	0	66	48	0	0	51	1.00
32529361--32529403	6	7.2	6	83	0	50	39	2	46	11	1.53
32529362--32529402	18	2.3	18	91	0	64	41	2	48	7	1.44
32529361--32529402	12	3.5	12	83	0	57	40	2	47	9	1.49
32529940--32530163	111	2.0	111	100	0	448	33	19	14	32	1.92
32535086--32535166	28	2.8	29	71	3	74	30	16	17	35	1.92
32538845--32538887	11	4.2	11	82	14	56	67	6	0	25	1.15
32538845--32538887	20	2.1	21	91	4	70	67	6	0	25	1.15
32539940--32540208	30	9.1	28	78	9	205	36	23	2	37	1.69
32542091--32542118	12	2.3	12	100	0	56	50	7	25	17	1.72
32548222--32548814	50	11.9	50	78	6	517	34	16	30	18	1.94
32548215--32548958	99	7.5	100	79	4	736	35	16	29	18	1.93
32548987--32549179	40	4.9	40	75	12	175	31	23	19	25	1.98
32548984--32549179	38	5.0	38	75	13	182	31	23	19	25	1.98
32548982--32549179	78	2.5	78	88	2	290	31	23	19	25	1.98
32550132--32550179	13	3.5	13	78	10	60	33	0	4	62	1.14
32550117--32550179	28	2.2	28	97	2	117	36	0	3	60	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32551201--32551431	30	7.8	29	77	8	169	35	25	3	35	1.71
32551201--32551426	60	3.8	59	76	7	197	35	25	3	35	1.72
32559632--32559673	21	2.0	22	81	13	52	47	2	2	47	1.28
32560032--32560099	24	3.0	23	74	10	68	69	7	22	1	1.22
32564236--32564418	88	2.1	86	88	2	267	33	23	9	32	1.88
32564211--32564418	43	4.8	43	88	1	281	32	23	10	33	1.89
32573805--32573839	18	1.9	18	94	0	61	48	0	0	51	1.00
32573803--32573850	24	2.0	24	83	4	60	50	0	0	50	1.00
32582799--32582829	15	2.0	16	93	6	55	58	3	12	25	1.50
32590727--32590778	26	1.9	28	84	7	72	26	21	21	30	1.98
32590702--32590801	41	2.4	42	83	6	116	25	22	23	30	1.99
32590727--32590815	13	6.4	13	70	15	54	25	20	24	29	1.99
32591571--32591613	17	2.5	17	85	11	61	34	2	20	41	1.65
32593445--32593508	17	3.8	17	79	4	67	40	1	6	51	1.36
32593481--32593522	10	3.9	10	82	17	57	42	0	2	54	1.13
32593484--32593534	23	2.2	23	82	10	59	49	1	3	45	1.32
32595385--32595756	30	12.7	30	71	14	188	35	25	3	36	1.73
32595447--32595756	59	5.3	59	74	10	246	34	25	3	36	1.73
32595396--32595723	59	5.6	58	75	9	202	34	25	3	36	1.72
32595678--32595838	29	5.6	28	72	11	101	33	25	8	32	1.85
32595706--32595838	29	4.7	29	73	10	112	32	26	9	31	1.89
32600263--32600399	62	2.2	60	85	9	175	61	10	18	9	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32602364--32602969	148	4.1	148	76	9	590	37	16	25	19	1.93
32602507--32603112	99	6.2	98	84	4	729	37	17	26	18	1.93
32602349--32603109	49	15.5	49	72	13	469	37	17	25	19	1.93
32602511--32603150	98	6.5	97	83	4	694	37	17	25	19	1.94
32603379--32603563	78	2.4	77	82	7	239	22	29	22	25	1.99
32603381--32603518	39	3.6	38	76	7	143	19	31	22	26	1.98
32603498--32603586	39	2.3	39	86	3	126	24	31	17	25	1.97
32604161--32604215	17	3.3	17	79	2	67	40	1	5	52	1.35
32604845--32604910	3	21.7	3	74	9	53	57	0	7	34	1.27
32604845--32604878	9	3.8	9	96	0	59	61	0	5	32	1.20
32606117--32606348	59	3.9	59	77	9	195	32	24	4	38	1.75
32606174--32606283	29	3.7	29	76	10	107	34	27	3	34	1.74
32606191--32606342	30	5.1	29	70	12	112	32	25	4	36	1.77
32606100--32606373	59	4.7	58	74	5	194	32	22	5	39	1.78
32609597--32609694	48	2.0	48	82	3	117	33	18	30	17	1.94
32614978--32615027	20	2.5	20	84	12	59	12	28	26	34	1.92
32614995--32615027	10	3.3	10	84	16	50	9	24	30	36	1.86
32619500--32619533	10	3.4	10	87	0	50	11	23	29	35	1.90
32619490--32619533	20	2.2	20	87	0	61	13	25	27	34	1.93
32622871--32622912	17	2.5	17	76	11	50	19	0	35	45	1.50
32633436--32633546	31	3.7	29	77	8	96	34	10	13	41	1.79
32633689--32633768	31	2.6	30	82	5	81	47	12	6	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32635195--32635225	16	1.9	16	93	0	53	74	0	0	25	0.82
32636443--32636486	23	2.0	22	86	13	63	38	25	4	31	1.76
32640477--32640559	29	2.8	29	87	1	103	30	7	27	34	1.84
32640504--32640667	30	5.5	29	81	7	159	37	6	19	35	1.78
32640552--32640716	30	5.7	29	77	12	124	41	6	16	35	1.75
32640504--32640667	59	2.8	59	81	4	168	37	6	19	35	1.78
32641885--32641922	18	2.1	19	90	5	60	2	0	13	84	0.73
32646047--32646147	52	1.9	52	93	0	175	25	15	21	36	1.93
32646045--32646176	52	2.5	52	86	0	174	25	15	22	37	1.93
32649413--32649473	30	2.0	31	87	3	88	37	1	1	59	1.17
32649705--32649769	22	3.0	22	93	0	112	24	16	15	43	1.87
32663591--32663652	23	2.9	22	69	9	56	30	4	4	59	1.39
32665526--32667237	572	3.0	572	98	0	3300	30	15	21	32	1.94
32683593--32683640	20	2.4	20	78	0	51	47	8	10	33	1.68
32685019--32685048	3	10.0	3	92	0	51	33	3	0	63	1.11
32687239--32687330	46	2.0	46	91	0	148	30	9	8	51	1.65
32690488--32690521	10	3.4	10	100	0	68	61	0	38	0	0.96
32697180--32697365	43	4.3	43	86	2	203	26	18	26	27	1.98
32699238--32699392	23	6.7	23	78	7	161	12	21	22	42	1.87
32699559--32699713	23	6.7	23	78	7	161	12	21	22	42	1.87
32699085--32700047	321	3.0	321	100	0	1926	25	15	22	37	1.93
32699880--32700098	71	3.1	69	78	8	201	12	22	21	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32699880--32700073	23	8.3	23	79	6	194	11	21	21	44	1.84
32706889--32706946	29	2.0	30	82	3	73	20	32	32	13	1.92
32708505--32708597	11	8.5	11	74	17	86	44	0	2	53	1.12
32708503--32708598	17	5.8	17	74	15	85	43	0	2	54	1.12
32708506--32708575	26	2.6	26	82	8	70	44	0	1	54	1.09
32708505--32708597	6	16.8	6	70	20	69	44	0	2	53	1.12
32709176--32709221	18	2.5	19	79	6	51	43	0	4	52	1.21
32710300--32710433	30	4.5	30	80	4	164	37	20	4	38	1.73
32710300--32710672	59	6.3	59	81	7	211	33	24	4	38	1.74
32710449--32710721	29	9.3	27	67	24	112	32	28	3	35	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163