genome.fa.s8.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  66  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17081364--17081480	11	11.4	11	72	18	60	37	3	0	58	1.15
17081360--17081542	10	18.2	10	69	14	56	37	5	0	57	1.22
17081376--17081579	20	10.3	20	73	15	133	36	4	0	57	1.24
17082291--17082319	15	1.9	15	100	0	58	68	0	0	31	0.89
17082397--17085699	162	20.7	162	83	4	3616	44	10	12	32	1.76
17082397--17085699	316	10.4	316	83	5	3560	44	10	12	32	1.76
17082567--17085699	478	6.6	476	85	4	3677	44	10	12	32	1.77
17084407--17084517	59	1.9	57	83	3	141	44	11	11	32	1.77
17085580--17085837	138	1.9	138	85	6	362	43	9	13	32	1.77
17087799--17089384	247	6.4	249	84	2	1811	28	15	12	43	1.84
17088535--17088639	57	1.9	54	88	5	156	31	16	9	42	1.80
17087808--17089384	495	3.2	494	84	1	1908	28	15	12	43	1.84
17091338--17091412	24	3.1	24	86	0	105	28	10	6	54	1.60
17091350--17091424	24	3.1	24	84	3	89	28	13	8	50	1.69
17093269--17093307	19	2.1	19	95	0	69	35	10	12	41	1.77
17095756--17095908	67	2.3	67	84	0	189	26	18	23	30	1.98
17114308--17114350	22	1.9	23	90	4	70	16	6	11	65	1.46
17122134--17122191	4	14.5	4	92	0	98	74	0	3	22	0.97
17123081--17123133	26	2.0	26	85	0	70	28	18	22	30	1.98
17126254--17126317	17	3.7	17	74	2	56	17	21	12	48	1.80
17126240--17126309	34	2.1	34	83	0	86	20	21	11	47	1.81
17152132--17152421	155	1.9	156	91	0	483	35	24	13	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17152132--17152414	52	5.5	52	93	0	469	36	24	13	26	1.92
17154040--17154092	21	2.5	21	78	0	61	28	24	16	30	1.97
17154850--17155031	52	3.5	51	81	3	195	37	22	11	28	1.89
17175186--17175372	52	3.6	52	89	2	295	35	24	14	25	1.94
17176175--17176277	51	2.0	51	96	0	188	29	14	3	52	1.59
17178693--17178774	26	3.1	27	82	8	98	25	20	21	31	1.98
17178748--17178821	26	2.8	26	77	0	76	27	13	20	39	1.90
17187252--17187403	26	5.8	26	86	0	187	25	21	23	29	1.99
17191699--17191818	48	2.6	45	75	10	114	37	25	11	25	1.90
17195003--17195037	12	2.9	12	95	0	61	17	31	34	17	1.93
17202826--17202881	28	2.0	28	100	0	112	14	17	7	60	1.55
17206021--17206112	20	4.6	19	78	6	87	48	13	6	31	1.67
17206021--17206111	40	2.3	40	82	3	103	48	13	6	31	1.68
17206174--17206214	21	2.0	21	90	9	66	46	19	4	29	1.71
17208388--17208471	36	2.4	36	87	2	116	26	11	16	45	1.82
17211453--17211497	10	4.8	10	78	15	51	24	4	0	71	1.05
17211445--17211493	19	2.8	17	84	6	62	24	4	0	71	1.03
17211445--17211500	9	6.1	9	78	12	60	25	3	0	71	1.02
17213650--17213692	16	2.5	16	81	11	50	30	0	9	60	1.28
17216831--17216868	17	2.2	18	86	9	53	52	0	0	47	1.00
17217761--17217803	22	2.0	22	85	0	59	44	2	11	41	1.53
17221388--17221439	26	2.0	27	92	7	90	11	23	0	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17223139--17223214	32	2.4	32	82	4	91	52	17	2	27	1.57
17226999--17227045	25	2.0	23	87	8	67	53	6	8	31	1.57
17228324--17228363	21	2.0	20	85	5	53	52	22	2	22	1.59
17228343--17228388	14	3.1	14	82	11	56	52	19	0	28	1.47
17230218--17230257	15	2.7	15	81	14	55	72	5	0	22	1.04
17232066--17232113	22	2.0	25	88	11	75	52	2	6	39	1.39
17232218--17232275	20	2.9	19	78	14	64	41	8	12	37	1.73
17239942--17239972	15	2.1	15	93	0	53	32	12	6	48	1.67
17240332--17240366	18	2.0	18	94	5	63	82	5	0	11	0.82
17240837--17241057	50	4.4	49	75	5	156	20	23	19	37	1.94
17240865--17241107	101	2.4	100	82	4	292	21	25	17	35	1.95
17240885--17241106	50	4.4	50	78	1	228	22	25	18	33	1.97
17253215--17253271	26	2.2	26	96	0	105	35	14	17	33	1.90
17256056--17256141	34	2.5	34	96	0	154	25	10	11	52	1.69
17268636--17268670	5	7.2	5	96	3	63	82	0	17	0	0.66
17268688--17268760	34	2.1	34	100	0	146	31	10	0	57	1.33
17286974--17287500	89	5.8	87	73	12	386	37	18	10	33	1.85
17286912--17287499	88	6.6	87	72	13	385	38	18	10	33	1.84
17287292--17287480	101	1.9	99	86	2	270	36	17	11	34	1.85
17290460--17290926	86	5.3	86	80	6	449	35	20	10	33	1.87
17291005--17291062	20	3.0	19	76	16	57	65	1	0	32	1.03
17291006--17291040	17	2.0	18	88	5	54	65	2	0	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17291412--17291439	8	3.5	8	100	0	56	21	0	10	67	1.20
17291371--17291423	20	2.7	20	73	5	54	24	7	3	64	1.37
17291399--17291462	27	2.3	28	78	13	69	25	1	4	68	1.17
17291428--17291489	19	3.2	19	79	9	54	30	3	3	62	1.26
17292337--17292400	26	2.5	26	78	0	65	32	10	12	43	1.77
17295038--17295084	24	2.0	24	91	0	76	29	8	21	40	1.83
17296477--17296538	32	2.0	32	84	6	83	38	14	12	33	1.84
17305753--17305800	24	2.0	24	87	0	69	18	33	2	45	1.61
17305773--17305814	17	2.4	17	88	4	57	21	28	2	47	1.63
17310428--17310520	41	2.3	41	84	5	134	30	6	25	37	1.81
17323410--17323453	3	14.7	3	100	0	88	68	0	0	31	0.90
17323595--17323625	11	2.8	11	100	0	62	6	9	19	64	1.45
17324442--17324500	23	2.7	21	72	12	55	42	3	6	47	1.46
17324944--17325327	209	1.9	202	90	4	617	39	5	4	50	1.47
17335159--17335314	40	3.9	40	86	1	215	28	19	30	22	1.98
17337086--17337124	18	2.2	18	100	0	78	38	25	15	20	1.92
17338547--17338675	61	2.1	61	88	0	186	32	34	11	21	1.90
17342991--17343037	22	2.1	23	84	4	60	44	4	6	44	1.49
17344706--17344807	26	3.9	26	72	0	87	28	23	19	28	1.98
17345846--17345918	17	4.3	17	75	0	65	45	9	21	23	1.81
17350702--17350773	17	4.2	17	83	0	81	47	9	20	22	1.79
17358080--17358216	62	2.2	62	97	0	256	47	5	13	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17358899--17359272	80	4.7	80	87	1	482	21	18	27	32	1.97
17362628--17362689	31	2.0	31	100	0	124	32	9	12	45	1.75
17365487--17365616	67	1.9	67	98	0	251	36	10	18	33	1.86
17367550--17368291	369	2.0	369	100	0	1484	40	12	7	38	1.72
17370620--17370658	8	4.9	8	80	0	51	64	2	10	23	1.37
17370620--17370666	24	2.0	24	91	0	76	65	4	10	19	1.39
17370630--17370683	28	1.9	28	88	0	81	66	5	7	20	1.37
17370632--17370678	20	2.3	20	85	7	60	68	6	8	17	1.37
17370620--17370683	28	2.5	24	72	18	56	65	4	9	20	1.39
17371033--17371117	42	2.0	41	84	13	111	49	18	1	30	1.55
17371304--17371507	30	6.8	29	82	6	221	31	3	25	38	1.74
17371304--17371507	90	2.3	89	86	2	275	31	3	25	38	1.74
17373203--17373378	79	2.2	79	88	7	250	26	15	27	31	1.96
17373203--17373460	40	6.5	40	72	12	174	25	16	26	31	1.97
17373203--17373431	79	2.9	77	80	9	248	25	16	25	31	1.96
17373629--17373734	50	2.1	50	80	3	115	24	27	16	32	1.96
17373658--17373757	50	2.0	50	96	0	182	22	26	18	34	1.96
17385497--17385591	29	3.2	29	81	8	129	33	7	20	38	1.80
17386351--17386384	15	2.3	15	94	0	59	23	23	44	8	1.81
17386578--17386624	20	2.4	19	80	16	51	19	0	2	78	0.85
17387180--17387213	14	2.3	15	85	5	52	55	5	5	32	1.48
17387332--17387387	20	2.7	20	83	13	69	71	1	3	23	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17388448--17388483	18	2.0	18	88	0	54	72	0	2	25	0.98
17389601--17389699	47	2.1	47	87	5	139	26	19	23	31	1.98
17389579--17389699	46	2.6	46	84	3	154	27	15	28	28	1.96
17389742--17390096	43	8.3	43	81	1	390	31	16	23	28	1.96
17389742--17390098	128	2.8	129	81	5	375	31	16	23	28	1.96
17392966--17393011	23	1.9	23	86	8	65	34	26	28	10	1.90
17401920--17402039	27	4.5	27	81	5	118	38	22	23	15	1.93
17401999--17402067	27	2.6	27	90	0	111	44	18	20	15	1.86
17405048--17405107	16	3.7	16	70	18	52	60	8	0	31	1.27
17405423--17405475	21	2.5	21	82	11	63	37	1	0	60	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163