genome.fa.s8.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  159  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45101716--45101743	14	2.0	14	100	0	56	35	35	21	7	1.81
45122986--45123064	30	2.7	28	70	25	65	63	10	5	21	1.45
45126920--45126982	20	3.4	18	81	10	74	42	3	3	50	1.34
45129012--45129276	29	9.0	29	71	22	171	33	29	1	35	1.65
45129012--45129275	59	4.5	59	87	5	358	33	29	1	35	1.65
45129009--45129299	118	2.5	116	86	7	417	33	28	1	36	1.66
45133994--45134022	6	4.8	6	100	0	58	13	0	0	86	0.58
45134536--45134585	22	2.3	22	86	6	66	58	8	8	26	1.54
45140341--45140371	3	10.3	3	100	0	62	0	32	0	67	0.91
45145346--45145395	24	2.1	24	85	7	66	56	0	0	44	0.99
45151185--45151274	45	2.0	45	93	0	153	38	17	23	20	1.93
45161935--45161990	26	2.2	26	83	6	69	23	1	17	57	1.50
45162371--45162396	7	3.7	7	100	0	52	15	0	0	84	0.62
45163884--45163959	33	2.3	34	86	6	120	44	0	3	51	1.20
45163897--45163952	19	3.2	19	61	23	50	37	0	3	58	1.15
45164409--45164678	132	2.0	132	95	0	486	26	16	12	45	1.82
45166069--45166130	31	2.1	30	84	6	81	38	3	9	48	1.52
45166905--45166966	20	3.1	20	72	9	72	51	4	3	40	1.39
45175545--45175576	2	16.0	2	100	0	64	50	0	0	50	1.00
45179927--45179965	14	2.9	13	85	7	51	30	2	0	66	1.05
45180836--45180871	16	2.1	18	90	10	58	66	0	0	33	0.92
45188526--45188606	30	2.6	31	86	9	103	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45189930--45189983	26	2.1	25	82	3	63	44	0	5	50	1.25
45192412--45192451	21	1.9	21	84	0	53	22	2	12	62	1.42
45194690--45194731	18	2.3	18	80	8	50	4	11	4	78	1.06
45197583--45197645	22	2.8	23	80	7	67	15	11	6	66	1.42
45197626--45197673	11	4.4	11	83	0	60	25	6	4	64	1.35
45198648--45198813	83	2.0	83	100	0	332	39	19	8	32	1.81
45208750--45208828	39	2.0	39	97	0	149	36	22	11	29	1.89
45215740--45215777	18	2.1	18	85	9	51	55	23	7	13	1.64
45221781--45221829	3	16.3	3	100	0	98	67	0	0	32	0.91
45223891--45223956	30	2.2	30	81	10	82	30	3	9	57	1.45
45230322--45230365	20	2.2	20	84	11	56	68	2	0	29	1.02
45230335--45230379	19	2.5	18	86	10	65	53	6	0	40	1.27
45233994--45234033	20	2.1	19	86	13	55	62	15	7	15	1.53
45238827--45238860	16	2.1	17	88	5	52	47	0	0	52	1.00
45251906--45251962	17	3.5	17	69	9	55	56	0	3	40	1.17
45251910--45251961	16	3.2	16	75	0	59	57	0	3	38	1.17
45255061--45255085	2	12.5	2	100	0	50	48	0	0	52	1.00
45255855--45255921	27	2.5	27	79	11	75	25	2	28	43	1.69
45258826--45258989	75	2.2	75	93	0	274	42	17	22	18	1.89
45269258--45269335	32	2.5	32	82	2	95	52	11	10	25	1.69
45273220--45273267	21	2.2	23	85	7	64	50	4	2	43	1.33
45279336--45279380	21	2.1	21	84	8	56	57	2	2	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45296371--45296423	17	3.2	17	74	12	56	66	7	0	26	1.18
45301060--45301513	153	3.0	152	86	4	585	51	21	8	18	1.73
45303552--45303687	58	2.3	58	81	5	139	25	10	11	52	1.69
45309279--45309377	31	3.3	31	71	15	98	27	8	13	51	1.68
45313033--45313080	2	24.0	2	91	0	78	50	4	0	45	1.21
45313021--45313080	16	3.8	16	88	0	75	48	6	1	43	1.39
45323007--45323040	17	2.0	17	100	0	68	41	17	5	35	1.74
45323238--45323270	17	1.9	17	93	0	57	36	18	3	42	1.66
45323820--45323920	31	3.3	31	75	0	103	35	8	6	48	1.61
45325790--45325816	1	27.0	1	100	0	54	0	0	0	100	0.00
45327363--45327424	22	2.8	23	83	9	76	69	1	14	14	1.27
45328231--45328273	19	2.3	19	84	8	52	58	4	0	37	1.19
45328872--45329070	106	1.9	109	80	5	244	26	24	11	38	1.89
45329843--45329868	6	4.3	6	100	0	52	84	0	0	15	0.62
45329809--45329868	8	7.0	8	76	12	57	80	0	3	16	0.85
45329809--45329868	26	2.3	26	85	5	77	80	0	3	16	0.85
45333830--45333884	21	2.7	21	78	13	60	30	12	14	41	1.83
45335181--45335221	21	1.9	22	95	5	75	75	4	9	9	1.17
45336853--45336892	2	20.0	2	100	0	80	50	0	0	50	1.00
45339359--45339409	22	2.4	21	83	6	66	3	13	0	82	0.81
45341454--45341497	22	2.0	22	86	8	63	52	0	2	45	1.13
45342317--45342345	12	2.3	13	94	5	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45345297--45345321	4	6.2	4	100	0	50	48	24	0	28	1.52
45348897--45348941	16	2.8	16	75	0	54	15	6	0	77	0.96
45356395--45356434	19	2.2	19	86	4	55	35	2	0	62	1.09
45359464--45359522	30	2.0	30	86	6	84	18	22	10	49	1.77
45359580--45359798	59	3.6	58	75	10	197	26	16	7	49	1.73
45359515--45359813	123	2.4	125	89	2	453	25	17	8	48	1.76
45369314--45369404	12	7.9	12	75	11	66	68	17	5	8	1.36
45369300--45369417	44	2.7	44	85	5	141	66	19	4	9	1.36
45369423--45369515	20	4.4	21	72	11	64	66	17	7	8	1.41
45369432--45369514	22	3.8	22	70	13	73	66	16	8	8	1.43
45371371--45371440	3	24.0	3	82	5	81	0	30	1	68	0.98
45371365--45371440	17	4.4	18	81	6	86	0	28	1	69	0.96
45382825--45382849	13	1.9	13	100	0	50	40	24	4	32	1.73
45386609--45386665	30	1.9	30	82	13	73	43	0	8	47	1.34
45391927--45391962	19	1.9	19	88	5	56	22	0	22	55	1.44
45392085--45392341	127	2.0	127	99	0	505	32	20	15	31	1.93
45394335--45394390	17	3.2	17	73	16	53	64	3	5	26	1.32
45399461--45399494	13	2.4	15	90	9	54	73	0	5	20	1.04
45400341--45400371	6	5.2	6	96	0	53	3	51	29	16	1.59
45401763--45401838	36	2.1	36	100	0	152	26	14	25	34	1.94
45409176--45409234	31	1.9	31	82	6	75	37	8	8	45	1.65
45410210--45410272	31	2.0	31	81	0	72	22	7	20	49	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45410220--45410286	31	2.2	31	83	5	82	19	7	22	50	1.72
45410391--45410471	31	2.6	30	77	11	92	55	12	8	23	1.64
45410391--45410482	31	3.0	28	74	17	78	55	11	7	25	1.62
45412931--45412962	2	16.0	2	100	0	64	0	0	50	50	1.00
45438644--45438742	25	3.6	27	74	17	80	55	4	1	39	1.25
45438637--45438717	29	2.6	30	81	16	87	51	3	1	43	1.27
45440501--45440547	6	7.3	6	92	7	67	78	0	2	19	0.85
45440726--45440784	29	2.1	29	83	3	75	47	5	0	47	1.24
45453264--45453319	29	1.9	29	92	0	94	35	8	19	35	1.83
45455473--45456172	135	5.2	135	94	1	1116	25	21	16	36	1.93
45465944--45465983	21	1.9	21	90	10	64	22	15	15	47	1.82
45490177--45490254	40	2.0	40	100	0	156	46	0	11	42	1.40
45494809--45494833	4	6.2	4	100	0	50	24	24	0	52	1.48
45494846--45494872	4	6.8	4	100	0	54	51	0	22	25	1.48
45500205--45500283	29	2.7	29	73	13	72	54	5	8	31	1.53
45500511--45500546	18	1.9	19	88	5	56	52	0	11	36	1.37
45505474--45505499	12	2.2	12	100	0	52	69	7	7	15	1.35
45509728--45509752	6	4.2	6	100	0	50	16	68	16	0	1.22
45509856--45509882	4	6.8	4	100	0	54	77	0	22	0	0.76
45518467--45518495	14	2.1	14	100	0	58	27	17	0	55	1.42
45519117--45519155	18	2.2	18	95	0	69	12	30	7	48	1.69
45537971--45538028	20	2.9	19	75	14	55	44	0	1	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45540889--45540960	37	1.9	37	97	0	135	33	9	5	51	1.58
45541078--45541116	17	2.4	16	87	12	53	66	0	0	33	0.92
45545142--45545173	3	10.7	3	100	0	64	31	0	0	68	0.90
45546374--45546424	24	2.1	25	92	3	86	39	1	7	50	1.42
45546630--45546754	59	2.1	60	90	1	198	41	0	5	52	1.25
45546626--45546793	59	2.8	60	81	7	196	43	0	6	50	1.28
45548235--45548272	10	3.8	10	83	10	51	60	2	0	36	1.11
45548229--45548277	21	2.4	21	89	3	73	59	6	0	34	1.22
45548795--45548842	23	2.1	23	84	7	62	39	2	0	58	1.10
45548877--45548922	21	2.1	22	84	11	60	34	2	2	60	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163