genome.fa.s8.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  26  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7072945--7072980	12	3.0	12	87	0	54	38	2	8	50	1.47
7076907--7076997	17	5.4	17	68	7	69	17	20	29	31	1.96
7076907--7076997	34	2.7	34	87	3	130	17	20	29	31	1.96
7082898--7082929	16	2.0	16	100	0	64	25	18	25	31	1.98
7084807--7084831	2	12.5	2	100	0	50	48	0	0	52	1.00
7102985--7103012	2	14.0	2	100	0	56	50	0	0	50	1.00
7103757--7103781	12	2.1	12	100	0	50	44	16	8	32	1.76
7108607--7108658	15	3.5	15	82	15	63	0	3	11	84	0.74
7108607--7108660	10	5.7	9	82	8	54	0	3	11	85	0.73
7108616--7108657	5	8.8	5	89	10	61	0	2	11	85	0.68
7108616--7108657	9	4.4	10	91	5	61	0	2	11	85	0.68
7114500--7114544	21	2.1	21	95	0	81	40	4	2	53	1.33
7115207--7115284	33	2.3	35	81	14	92	52	2	3	41	1.33
7117375--7117429	21	2.8	20	83	5	67	30	0	1	67	1.01
7124976--7125033	29	2.0	29	83	6	73	39	10	18	31	1.85
7130014--7130046	11	3.0	11	90	0	57	63	0	12	24	1.28
7151241--7151326	33	2.7	30	76	16	84	48	0	2	48	1.14
7151280--7151359	33	2.3	35	81	10	94	50	1	1	47	1.17
7154110--7154164	26	2.1	26	86	3	74	34	1	27	36	1.68
7156461--7156506	23	2.0	23	95	0	83	54	8	8	28	1.61
7158126--7158150	8	3.1	8	100	0	50	52	0	24	24	1.48
7158457--7158507	24	2.1	24	85	7	68	58	9	9	21	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7160152--7160206	26	2.1	26	86	3	74	34	1	27	36	1.68
7163173--7163236	24	2.7	24	85	4	76	51	7	14	26	1.69
7169124--7169168	19	2.2	21	85	14	60	28	2	0	68	1.01
7169279--7169326	19	2.5	20	77	12	57	39	0	0	60	0.97
7174881--7174914	13	2.6	13	100	0	68	17	35	8	38	1.81
7175426--7175569	71	2.0	71	90	0	225	38	12	23	25	1.90
7178696--7178749	22	2.6	21	80	13	58	25	3	1	68	1.16
7179957--7180000	22	2.0	22	90	0	70	31	20	4	43	1.72
7181281--7181373	48	1.9	49	80	10	111	44	2	1	52	1.20
7183456--7183593	68	2.0	68	91	2	224	34	13	24	26	1.93
7183737--7183778	22	1.9	22	95	0	75	30	19	0	50	1.48
7187001--7187041	17	2.3	19	80	16	52	43	4	0	51	1.23
7192203--7192299	51	1.9	50	83	8	124	56	8	8	26	1.57
7192294--7192352	31	1.9	31	92	0	100	44	0	6	49	1.29
7193509--7193568	28	2.1	28	84	6	77	23	8	31	36	1.84
7193550--7193772	59	3.8	56	78	10	198	37	5	25	31	1.79
7193637--7193733	29	3.3	28	72	13	79	41	3	25	29	1.71
7193547--7193743	59	3.4	58	79	6	202	36	4	26	32	1.77
7194872--7194930	3	19.0	3	79	6	64	35	0	1	62	1.05
7195622--7195750	6	22.2	6	75	15	119	55	2	0	41	1.12
7195622--7195750	18	7.4	17	84	11	163	55	2	0	41	1.12
7195622--7195750	35	3.7	33	82	11	150	55	2	0	41	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7196178--7196229	17	3.1	17	83	5	52	61	0	0	38	0.96
7196197--7196229	11	2.9	12	86	13	52	66	0	0	33	0.92
7196574--7196666	26	3.4	26	75	18	107	38	25	7	27	1.83
7196594--7196694	31	3.4	30	75	19	122	40	25	6	26	1.81
7196572--7196694	57	2.2	57	98	1	239	39	25	8	27	1.84
7196590--7196681	26	3.3	26	75	19	105	41	23	8	26	1.83
7196961--7196999	19	2.1	19	85	0	51	51	2	7	38	1.44
7197048--7197074	3	9.0	3	100	0	54	66	0	0	33	0.92
7198239--7198712	29	16.2	28	65	20	131	34	27	2	35	1.70
7198249--7198827	59	10.0	56	80	13	253	34	27	2	35	1.71
7198310--7198795	59	8.3	59	87	6	566	33	28	2	35	1.70
7198310--7198823	118	4.4	116	85	7	634	33	28	2	35	1.71
7198721--7198848	29	4.5	28	70	18	84	32	23	4	39	1.75
7200209--7200722	49	10.5	49	70	11	241	15	25	20	39	1.91
7200160--7200713	99	5.7	99	85	3	660	15	24	20	39	1.91
7205434--7205459	10	2.6	10	100	0	52	46	0	0	53	1.00
7205454--7205514	28	2.2	27	80	11	70	39	1	6	52	1.37
7206185--7206263	6	13.7	6	69	12	58	46	2	1	49	1.23
7206209--7206263	17	3.2	17	77	10	67	49	0	1	49	1.11
7213266--7213448	97	1.9	97	82	4	235	39	13	17	29	1.88
7213658--7213719	28	2.2	28	88	5	90	27	11	29	32	1.91
7213763--7213988	116	1.9	118	85	5	316	39	4	23	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7213760--7213999	58	4.1	59	82	7	283	39	5	24	30	1.77
7213795--7214001	29	7.1	29	71	14	124	40	4	24	30	1.74
7215026--7215103	3	25.0	3	82	7	84	34	0	2	62	1.09
7215026--7215103	13	5.7	13	76	16	77	34	0	2	62	1.09
7215797--7215908	6	19.2	6	69	12	72	54	3	0	41	1.24
7215809--7215905	35	2.8	36	84	3	126	54	3	1	41	1.23
7215797--7215908	18	6.4	17	80	6	134	54	3	0	41	1.24
7216297--7216343	21	2.3	21	85	10	62	38	0	0	61	0.96
7218462--7218493	2	16.0	2	100	0	64	50	0	0	50	1.00
7228287--7228451	58	2.8	58	83	6	199	45	1	0	52	1.16
7228538--7228631	44	2.1	46	86	11	133	38	25	4	31	1.75
7229051--7229110	27	2.2	27	90	0	93	26	0	10	63	1.26
7231379--7231432	22	2.6	21	80	13	58	25	3	1	68	1.16
7231800--7231843	22	2.0	22	90	0	70	29	20	6	43	1.78
7232198--7232224	14	1.9	14	100	0	54	7	0	25	66	1.17
7233239--7233280	22	1.9	22	95	0	75	30	19	0	50	1.48
7234870--7235007	68	2.0	68	92	0	231	32	13	25	28	1.94
7235150--7235191	22	1.9	22	95	0	75	30	19	0	50	1.48
7238339--7238379	17	2.3	19	80	16	52	43	4	0	51	1.23
7248865--7248898	16	2.1	16	100	0	68	35	14	35	14	1.87
7252558--7252616	24	2.5	24	83	10	68	37	3	0	59	1.14
7252633--7252727	20	4.9	19	69	17	61	41	0	1	57	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7252581--7252746	58	2.8	58	81	8	194	43	1	1	53	1.19
7252890--7252951	16	3.9	16	91	4	99	27	25	6	40	1.80
7253406--7253465	26	2.2	26	88	5	84	26	0	11	61	1.30
7254461--7254598	68	2.0	68	91	0	222	34	11	25	28	1.91
7254744--7254785	22	1.9	22	95	0	75	30	19	0	50	1.48
7257632--7257667	18	1.9	19	88	5	56	33	13	22	30	1.93
7263778--7263975	97	2.1	96	94	0	342	47	8	3	40	1.49
7268223--7268316	40	2.3	41	83	5	111	35	22	24	18	1.96
7268362--7268539	41	4.3	41	78	11	166	25	29	23	21	1.99
7268362--7268516	82	1.9	82	83	2	204	27	30	22	19	1.98
7268422--7268638	41	5.3	41	76	13	155	25	25	24	23	2.00
7269672--7269773	44	2.3	43	83	8	125	12	44	11	31	1.79
7269687--7269773	44	2.0	44	88	0	129	11	44	11	32	1.76
7272396--7273462	18	57.3	18	63	19	202	45	3	4	46	1.42
7272341--7273477	112	10.2	112	95	0	1965	45	3	5	46	1.42
7273402--7273462	8	6.8	9	75	17	56	45	0	1	52	1.10
7273490--7273576	22	4.4	18	75	16	66	41	1	2	55	1.20
7273490--7273583	8	11.8	8	71	22	65	41	1	2	55	1.19
7273513--7273583	30	2.4	30	86	9	92	40	1	2	54	1.23
7273500--7273585	22	4.2	20	75	16	79	40	1	2	55	1.20
7273605--7273671	33	2.1	32	91	2	107	41	7	10	40	1.67
7279100--7279257	66	2.4	66	94	0	271	41	19	25	13	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7279244--7279281	11	3.5	11	80	20	53	28	23	47	0	1.52
7279243--7279295	21	2.5	21	93	0	88	32	20	47	0	1.51
7279500--7279532	15	2.2	15	94	0	57	27	0	21	51	1.48
7279630--7279705	34	2.2	36	92	4	129	19	21	21	38	1.94
7282871--7283028	72	2.2	72	95	0	280	34	17	20	27	1.95
7285270--7285315	19	2.4	19	85	7	58	36	17	6	39	1.76
7288857--7288896	21	1.9	21	84	0	53	27	35	7	30	1.84
7289861--7289906	19	2.4	19	92	0	74	39	19	4	36	1.72
7292904--7292979	17	4.5	17	73	3	73	39	1	6	52	1.36
7294925--7295282	29	12.7	29	69	22	142	30	29	4	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163