genome.fa.s8.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  64  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16366806--16366857	3	18.3	3	75	25	51	67	0	32	0	0.91
16366799--16366850	24	2.2	24	86	6	70	65	1	32	0	1.04
16375585--16375650	19	3.3	19	78	18	64	48	13	4	33	1.63
16377051--16377121	37	1.9	37	85	5	99	29	26	18	25	1.98
16377955--16378201	127	1.9	127	89	1	379	30	19	13	36	1.91
16378208--16378238	16	1.9	16	93	0	53	22	16	0	61	1.34
16381270--16381340	37	1.9	37	85	0	97	29	28	16	25	1.97
16382303--16382333	16	1.9	16	93	0	53	22	16	0	61	1.34
16385963--16386042	37	2.2	37	84	8	101	30	27	20	22	1.98
16386107--16386162	26	2.2	26	86	0	76	28	21	21	28	1.99
16388914--16388981	20	3.5	20	85	2	75	44	13	8	33	1.74
16388926--16388981	20	2.8	20	89	2	78	46	12	7	33	1.69
16392533--16392622	30	3.1	28	74	11	83	54	6	1	37	1.34
16392541--16392622	29	2.8	29	83	12	105	52	7	1	39	1.37
16392696--16392752	11	5.3	11	79	12	64	52	1	1	43	1.21
16392701--16392740	21	2.0	20	90	5	62	52	0	0	47	1.00
16392694--16392752	17	3.5	17	76	19	52	52	1	1	44	1.21
16407492--16407530	20	2.0	19	90	5	60	0	25	5	69	1.09
16412140--16412181	16	2.6	16	80	0	57	38	4	0	57	1.20
16416997--16417037	14	2.9	15	85	10	59	65	12	0	21	1.25
16425652--16425876	28	8.1	27	74	9	125	27	18	22	31	1.97
16425671--16425876	56	3.7	56	83	4	249	26	19	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16425669--16425872	84	2.4	84	87	4	279	25	20	23	31	1.98
16429845--16430033	94	2.0	94	88	0	279	33	15	11	39	1.83
16439741--16439792	15	3.2	16	83	5	61	57	3	36	1	1.28
16440238--16440282	19	2.4	19	88	0	63	15	11	13	60	1.60
16444221--16444305	43	2.0	43	80	0	98	36	10	24	28	1.89
16444235--16444407	42	4.1	42	77	6	125	35	11	24	27	1.90
16444274--16444417	42	3.4	44	77	5	127	36	12	25	25	1.91
16450202--16450329	30	4.3	29	83	11	154	39	23	4	32	1.75
16462122--16462251	39	3.3	39	82	4	163	30	27	16	25	1.97
16462300--16462459	50	3.2	50	79	5	164	36	20	22	20	1.95
16462487--16462613	45	2.8	44	84	7	166	40	22	12	25	1.89
16464313--16464464	30	5.1	30	86	4	200	39	22	3	34	1.73
16466044--16466072	14	2.0	15	93	6	51	0	27	6	65	1.18
16467492--16467525	18	1.9	18	88	5	52	55	0	17	26	1.42
16472076--16472118	18	2.4	18	92	0	68	23	18	30	27	1.98
16479007--16479046	20	2.0	21	85	5	55	62	10	7	20	1.50
16489985--16490093	42	2.6	42	85	1	148	36	9	24	29	1.86
16495917--16495943	10	2.7	10	100	0	54	14	0	7	77	0.97
16499123--16499149	11	2.5	11	100	0	54	81	7	0	11	0.87
16501454--16501478	13	1.9	13	100	0	50	72	0	0	28	0.86
16506319--16506469	43	3.6	41	76	9	144	33	11	25	28	1.92
16506328--16506469	41	3.4	41	80	4	142	33	12	26	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16506318--16506545	42	5.4	42	73	8	169	36	10	25	28	1.88
16506491--16506576	40	2.1	40	87	6	120	40	9	23	26	1.84
16511800--16511859	16	3.8	16	74	12	52	28	1	20	50	1.58
16511802--16511861	31	1.9	32	86	3	86	28	1	20	50	1.58
16515173--16515252	24	3.3	23	75	17	72	40	13	6	40	1.70
16515105--16515343	59	4.3	58	76	13	203	40	18	4	36	1.70
16515160--16515284	49	2.6	49	83	1	162	40	16	4	39	1.69
16515108--16515343	108	2.2	108	84	0	312	40	18	4	36	1.70
16515185--16515266	24	3.4	24	73	17	71	39	15	6	39	1.73
16515257--16515295	10	3.8	10	82	3	51	38	17	2	41	1.64
16518263--16518370	49	2.2	49	80	6	121	42	16	4	36	1.69
16518334--16518429	25	3.4	25	67	23	66	38	18	4	38	1.70
16518296--16518496	59	3.4	59	89	3	314	38	17	4	38	1.70
16518402--16518439	10	3.7	10	89	3	58	39	21	2	36	1.67
16518469--16518503	10	3.5	10	88	0	52	34	17	5	42	1.73
16518881--16519105	36	6.2	36	88	0	306	39	22	9	28	1.85
16520844--16520913	32	2.2	32	86	0	95	42	14	7	35	1.73
16524388--16524442	28	2.0	28	92	0	92	27	16	23	32	1.96
16524390--16524450	28	2.2	28	84	0	77	32	16	22	27	1.96
16524461--16524557	28	3.5	28	85	2	133	25	14	22	37	1.92
16525790--16525829	21	1.9	21	84	0	53	55	2	5	37	1.35
16528357--16528410	20	2.7	19	81	13	65	29	0	5	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16545927--16545974	19	2.6	18	84	15	62	8	12	4	75	1.18
16556690--16556799	53	2.0	55	89	6	172	53	3	23	19	1.60
16558690--16558722	13	2.4	14	90	5	50	15	15	27	42	1.86
16566185--16566232	19	2.5	19	100	0	96	8	27	27	37	1.85
16566366--16566400	9	4.0	9	96	3	63	31	0	0	68	0.90
16566357--16566412	18	3.0	18	77	15	60	32	1	1	64	1.14
16578242--16578285	23	2.0	22	86	4	61	45	15	0	38	1.47
16583933--16584030	38	2.6	38	80	7	128	28	16	26	28	1.97
16593547--16593614	30	2.3	30	92	0	109	26	22	25	26	2.00
16597567--16597618	24	2.1	25	82	10	63	1	36	1	59	1.19
16606861--16606914	15	3.6	16	80	9	69	9	24	1	64	1.32
16606900--16606946	22	2.1	23	88	7	71	12	27	0	59	1.34
16606895--16606959	21	3.1	21	77	12	62	12	23	0	64	1.27
16607806--16607837	3	10.7	3	100	0	64	0	31	0	68	0.90
16610687--16610736	15	3.2	16	80	8	59	10	26	2	62	1.38
16619725--16619754	14	2.1	15	93	6	53	23	23	6	46	1.75
16626604--16626648	22	2.0	22	83	8	56	31	0	4	64	1.13
16652056--16652090	17	2.1	17	94	0	61	31	22	17	28	1.96
16652581--16652876	26	11.4	26	82	2	353	26	25	16	31	1.96
16653319--16653375	23	2.5	23	100	0	114	22	35	5	36	1.77
16655856--16655895	18	2.3	18	86	4	55	55	12	15	17	1.70
16660683--16660748	27	2.4	27	76	2	69	48	9	3	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16671663--16671706	23	2.0	22	86	4	61	45	15	0	38	1.47
16675092--16675128	16	2.3	16	90	9	58	32	8	2	56	1.43
16680893--16680963	31	2.4	30	80	4	81	42	4	16	36	1.68
16681757--16681791	16	2.1	17	94	5	63	48	5	0	45	1.26
16686755--16686791	19	1.9	19	94	0	65	40	5	13	40	1.67
16689024--16689060	19	1.9	19	94	0	65	35	5	16	43	1.71
16691225--16691394	56	3.0	56	96	0	304	37	11	21	29	1.88
16713703--16713754	21	2.5	21	71	6	52	30	13	25	30	1.94
16715834--16715866	11	2.7	13	81	18	52	21	0	21	57	1.41
16717555--16717609	28	2.0	28	85	0	74	34	16	25	23	1.95
16723615--16723696	38	2.2	38	100	0	164	40	10	9	39	1.74
16733850--16733883	2	17.0	2	93	0	59	47	0	0	52	1.00
16734114--16734166	22	2.4	22	83	0	70	7	28	22	41	1.81
16749153--16749198	19	2.3	21	82	10	62	21	0	28	50	1.49
16749714--16749769	21	2.7	21	82	0	67	28	10	25	35	1.89
16760073--16760120	21	2.3	22	85	10	73	27	14	29	29	1.95
16766201--16766247	22	2.1	23	88	4	69	21	0	23	55	1.44
16769961--16770011	21	2.4	21	90	0	84	52	13	5	27	1.63
16771937--16772203	40	6.7	40	80	3	268	24	17	20	36	1.94
16771937--16772203	120	2.2	120	83	2	331	24	17	20	36	1.94
16773615--16773665	22	2.3	22	86	0	75	49	19	19	11	1.79
16779673--16779933	116	2.2	116	86	2	380	35	29	8	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16780428--16780529	36	2.8	36	80	7	116	22	24	12	40	1.89
16787095--16787335	116	2.1	116	86	0	329	36	26	8	28	1.85
16798152--16798196	17	2.6	17	82	6	56	17	4	0	77	0.92
16799243--16799368	39	3.2	39	88	2	173	33	20	19	26	1.97
16799084--16799297	116	1.8	116	86	0	311	35	19	18	27	1.95
16804896--16804930	11	3.2	11	95	0	61	17	2	34	45	1.63
16805658--16805772	39	2.9	39	79	7	135	34	20	19	26	1.96
16807675--16807954	119	2.4	120	86	4	381	52	8	7	31	1.60
16807675--16807929	61	4.3	61	78	9	242	50	8	8	32	1.63
16807675--16807957	118	2.4	116	83	7	361	52	8	8	31	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163