genome.fa.s8.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  108  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30600261--30600315	3	19.0	3	85	14	80	0	32	0	67	0.91
30600264--30600315	14	3.6	14	94	2	86	0	32	0	67	0.91
30600261--30600315	17	3.2	17	89	7	76	0	32	0	67	0.91
30600261--30600324	17	3.9	17	81	8	60	0	35	0	64	0.94
30613624--30613671	21	2.3	21	85	7	62	25	18	16	39	1.91
30625857--30625887	3	10.3	3	92	0	53	64	0	3	32	1.09
30627867--30627899	12	2.8	12	86	13	50	0	42	0	57	0.98
30636206--30636249	2	22.0	2	95	0	79	47	0	2	50	1.13
30637870--30638734	210	4.1	209	81	3	787	34	14	21	28	1.94
30638858--30638932	38	2.0	38	91	0	123	37	8	25	29	1.84
30659324--30659365	20	2.0	21	86	4	59	28	4	2	64	1.26
30661219--30661248	10	3.0	10	95	0	51	63	6	20	10	1.47
30675239--30675480	121	2.0	121	98	0	466	29	15	14	40	1.86
30685012--30685202	98	2.0	97	83	3	240	31	15	23	29	1.95
30692553--30692591	9	4.3	9	83	0	51	46	12	10	30	1.75
30692715--30692834	58	2.1	58	92	3	197	47	19	0	33	1.50
30693706--30693742	12	3.1	12	88	0	56	48	18	2	29	1.62
30699974--30700011	3	12.7	3	100	0	76	34	0	0	65	0.93
30700439--30708728	6	1394.0	6	78	8	6162	23	11	31	33	1.90
30700439--30708737	15	557.4	15	74	12	4897	23	11	31	33	1.90
30709112--30709171	28	2.1	28	81	6	68	26	6	26	40	1.81
30709274--30709533	30	8.8	29	67	18	101	35	4	25	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30709245--30709523	59	4.8	58	79	5	226	34	5	25	34	1.79
30709392--30709533	29	4.8	29	80	7	144	35	2	24	38	1.68
30711413--30711466	24	2.2	24	86	3	72	55	0	1	42	1.10
30711901--30712310	201	2.0	201	94	0	721	23	24	19	32	1.98
30720104--30720257	71	2.2	72	98	1	301	22	1	28	47	1.59
30721620--30721925	158	1.9	158	83	3	393	21	24	25	28	1.99
30728227--30728264	3	12.7	3	94	0	67	65	0	2	31	1.06
30739557--30739721	50	3.3	50	77	8	149	18	18	23	39	1.92
30739682--30740347	49	13.6	49	78	9	531	22	18	16	43	1.88
30739682--30740338	147	4.5	147	77	10	585	22	18	15	43	1.88
30739680--30740347	98	6.8	98	78	8	590	22	18	16	42	1.88
30756794--30756827	15	2.3	15	94	0	59	52	0	41	5	1.25
30763367--30763404	17	2.2	17	86	9	51	71	2	5	21	1.19
30763359--30763413	26	2.1	26	83	6	67	69	1	3	25	1.15
30767989--30768044	20	2.8	20	83	2	69	39	3	3	53	1.36
30769838--30769881	19	2.3	18	77	11	52	65	4	0	29	1.12
30769837--30769886	20	2.5	19	74	6	55	62	6	0	32	1.20
30774475--30774513	6	6.5	6	87	0	51	46	0	30	23	1.53
30779463--30779499	3	12.3	3	94	0	65	62	0	2	35	1.10
30781188--30781230	18	2.3	18	84	11	52	30	4	9	55	1.52
30789250--30789284	15	2.4	14	86	9	52	68	5	0	25	1.11
30792684--30793138	49	9.3	49	77	7	268	21	17	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30792722--30792991	97	2.8	97	80	5	276	20	18	15	45	1.85
30800976--30801004	12	2.5	12	94	5	51	41	24	17	17	1.90
30802469--30802576	27	4.0	27	85	0	108	25	29	14	29	1.95
30808457--30808483	2	13.5	2	100	0	54	48	0	0	51	1.00
30813996--30814117	23	5.3	23	75	9	113	13	21	21	43	1.87
30815934--30816909	49	19.8	49	74	9	472	20	17	18	44	1.88
30816005--30816909	147	6.1	145	78	8	678	20	17	18	44	1.87
30816514--30816883	197	1.9	197	81	4	451	21	15	18	44	1.86
30816078--30816919	49	17.1	49	75	7	496	20	16	17	44	1.86
30828994--30829036	15	2.9	14	83	10	59	67	2	0	30	1.03
30829057--30829114	31	1.9	29	82	6	71	39	5	5	50	1.47
30835283--30835588	158	1.9	158	79	1	344	21	22	25	30	1.99
30845555--30845591	17	2.2	17	90	0	56	51	0	29	18	1.47
30845983--30846028	23	2.0	22	83	4	56	15	13	21	50	1.78
30846783--30846838	2	28.5	2	89	10	89	48	1	0	50	1.11
30848643--30848681	17	2.2	19	86	9	55	33	2	2	61	1.23
30856528--30856588	29	2.0	30	87	6	88	59	6	4	29	1.44
30858299--30858736	49	8.9	50	76	6	261	21	20	17	39	1.92
30858396--30859084	49	14.1	49	77	3	503	21	18	17	42	1.89
30858306--30859076	98	7.9	98	78	4	625	21	19	17	41	1.90
30858401--30859084	145	4.7	145	76	5	344	21	18	17	42	1.90
30877596--30877719	23	5.4	23	80	5	135	38	22	23	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30890962--30891055	47	2.0	47	95	0	170	41	13	10	34	1.79
30891529--30891842	151	2.1	151	90	0	493	30	14	23	31	1.94
30903542--30903650	49	2.2	48	79	6	121	38	16	25	19	1.92
30903821--30903982	50	3.2	50	67	10	141	35	16	17	31	1.92
30903740--30904110	102	3.7	102	92	4	602	36	16	16	30	1.92
30904115--30904351	29	8.1	29	68	10	126	31	28	1	39	1.65
30904173--30904351	58	3.1	58	84	7	204	30	29	0	39	1.61
30904173--30904351	29	6.1	30	71	14	133	30	29	0	39	1.61
30904107--30904351	58	4.2	58	77	9	203	31	27	1	39	1.65
30904336--30904397	28	2.2	28	85	0	88	33	29	9	27	1.88
30904338--30904407	28	2.5	28	86	4	79	34	25	8	31	1.86
30908076--30908170	47	2.0	46	89	2	145	33	9	14	42	1.78
30912142--30912248	47	2.3	47	80	0	124	40	18	11	29	1.86
30912523--30912549	14	1.9	14	100	0	54	74	14	0	11	1.08
30913043--30913074	16	2.0	16	93	0	55	15	0	0	84	0.63
30913998--30914026	13	2.1	14	93	6	51	34	0	0	65	0.93
30917555--30917626	29	2.5	30	82	11	87	36	15	22	26	1.93
30917566--30917628	29	2.2	29	88	8	94	33	15	23	26	1.95
30917666--30917864	59	3.4	58	79	6	213	38	5	23	33	1.77
30917760--30917888	58	2.2	58	81	8	147	36	3	22	37	1.70
30917840--30917999	30	5.4	29	75	16	109	41	3	21	33	1.69
30917840--30918006	29	5.7	30	78	10	123	40	2	21	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30919534--30919567	17	1.9	18	94	5	61	38	8	0	52	1.33
30920705--30920863	85	1.9	86	86	1	230	25	25	15	33	1.95
30920567--30921554	201	4.9	201	87	2	1390	23	22	18	34	1.96
30921902--30922192	48	6.0	48	78	9	277	12	25	23	39	1.89
30924275--30924306	9	3.6	9	91	0	55	0	12	0	87	0.54
30924275--30924308	14	2.4	14	85	0	50	0	11	0	88	0.52
30929401--30929462	29	2.1	29	82	14	83	27	9	27	35	1.88
30929420--30929696	58	4.7	58	77	6	213	37	5	23	32	1.78
30929595--30929789	29	6.7	29	74	11	148	36	4	24	34	1.76
30929420--30929788	117	3.1	119	77	8	287	37	4	24	33	1.77
30929561--30929819	30	8.8	30	71	12	139	37	4	24	34	1.75
30929720--30929843	59	2.1	58	82	8	144	38	1	20	38	1.63
30929737--30929844	30	3.7	29	80	7	110	38	0	20	39	1.59
30931626--30931684	18	3.4	17	88	2	82	57	3	1	37	1.25
30933333--30933363	7	4.4	7	91	0	53	45	0	12	41	1.42
30934212--30934245	5	6.8	5	93	0	59	38	0	0	61	0.96
30935546--30935607	29	2.2	29	83	8	76	29	3	0	67	1.06
30937890--30937928	14	2.8	14	92	7	62	41	12	0	46	1.42
30939332--30939377	21	2.2	21	84	7	58	15	8	17	58	1.61
30939529--30939574	20	2.3	20	92	0	74	21	15	26	36	1.93
30948125--30948262	52	2.7	52	92	2	217	29	13	22	34	1.92
30948680--30948723	23	1.9	23	100	0	88	29	20	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30950537--30950708	59	2.9	59	83	4	186	43	5	20	30	1.74
30950602--30950717	59	2.0	59	92	0	196	42	5	20	31	1.74
30950689--30950809	64	1.9	62	85	6	163	38	4	23	33	1.77
30950691--30950871	30	5.7	31	72	13	129	37	3	25	33	1.72
30950691--30950872	64	2.9	63	80	6	156	37	3	25	34	1.72
30950755--30950898	32	4.7	31	82	6	136	36	2	25	35	1.68
30950787--30950919	30	4.5	29	80	8	135	36	3	24	36	1.71
30950735--30950958	30	7.4	30	79	12	124	35	4	25	34	1.76
30952141--30952181	21	2.0	21	90	0	64	43	2	0	53	1.13
30952921--30952982	17	3.6	17	69	4	52	53	9	3	33	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163