genome.fa.s8.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  162  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46495907--46496044	23	5.9	23	80	7	120	39	23	25	10	1.87
46504581--46504707	43	2.9	43	82	10	168	49	3	17	29	1.64
46509158--46509182	2	12.5	2	100	0	50	48	0	0	52	1.00
46520941--46520992	20	2.6	20	77	22	56	42	0	11	46	1.40
46521103--46521151	23	2.0	24	81	14	57	61	4	4	30	1.33
46523528--46523568	18	2.3	18	87	8	57	56	0	0	43	0.99
46525337--46525393	30	1.9	30	85	7	80	42	0	7	50	1.29
46530507--46530563	29	2.0	29	82	6	71	29	3	1	64	1.20
46530524--46530566	14	3.0	14	80	16	52	25	4	2	67	1.22
46543973--46544011	12	3.2	13	89	7	55	53	7	7	30	1.57
46564838--46564905	30	2.2	32	82	17	83	39	0	5	54	1.25
46564839--46564911	29	2.5	27	75	18	67	41	0	5	53	1.24
46567340--46567593	118	2.2	118	92	2	415	44	6	7	41	1.58
46574478--46574507	4	7.8	4	92	7	53	73	0	0	26	0.84
46575327--46575394	29	2.4	29	76	13	70	48	2	16	32	1.61
46576693--46576879	51	3.6	51	87	4	261	35	13	21	28	1.92
46581388--46581426	15	2.4	16	87	8	53	35	0	0	64	0.94
46584221--46584256	4	9.0	4	88	11	56	27	0	22	50	1.50
46590946--46591663	182	4.0	181	82	5	810	33	10	20	34	1.87
46599460--46599495	2	18.0	2	100	0	72	50	0	0	50	1.00
46600385--46600623	131	1.8	130	81	7	293	35	11	17	35	1.86
46630114--46630140	6	4.5	6	100	0	54	18	29	37	14	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46634986--46635013	11	2.5	11	100	0	56	42	0	0	57	0.99
46639387--46639458	34	2.0	34	86	7	99	41	16	8	33	1.78
46647068--46648229	387	3.0	387	94	1	2026	26	19	21	32	1.97
46654109--46654260	30	5.1	30	85	4	191	1	28	19	49	1.59
46654229--46654264	18	2.0	18	88	0	54	5	30	19	44	1.73
46655532--46655667	31	4.5	31	70	9	100	47	11	16	25	1.80
46655475--46655667	90	2.1	90	80	5	203	45	11	17	25	1.83
46661892--46661975	30	2.8	30	85	1	105	47	11	4	35	1.61
46662189--46662213	4	6.2	4	100	0	50	24	24	28	24	2.00
46664052--46664218	60	2.8	58	81	7	203	25	16	10	47	1.79
46664052--46664199	59	2.5	59	85	5	201	25	16	10	47	1.77
46665132--46665208	36	2.1	36	92	0	127	19	29	33	16	1.94
46665148--46665206	18	3.3	18	69	9	57	16	30	35	16	1.92
46666297--46666344	22	2.2	22	81	7	53	54	6	0	39	1.26
46670680--46670779	36	2.8	36	98	0	191	22	26	17	35	1.95
46673037--46673095	23	2.5	23	81	13	66	37	1	3	57	1.25
46675616--46675640	4	6.2	4	100	0	50	24	24	28	24	2.00
46685118--46685152	2	17.5	2	100	0	70	51	0	48	0	1.00
46686640--46686683	8	5.5	8	83	0	52	50	4	0	45	1.22
46686640--46686683	6	7.3	6	89	0	52	50	4	0	45	1.22
46697906--46698063	63	2.5	63	83	2	203	36	10	8	45	1.68
46702640--46702679	22	1.9	19	85	14	53	75	7	0	17	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46706135--46706473	84	4.0	81	82	8	389	43	9	30	17	1.79
46706135--46706473	168	2.0	168	84	6	438	43	9	30	17	1.79
46713423--46713531	58	1.9	56	84	3	146	30	12	7	49	1.68
46713677--46713722	22	2.1	22	95	0	83	43	4	28	23	1.73
46718449--46718507	29	2.1	27	81	6	64	59	1	5	33	1.29
46721531--46721576	23	2.0	23	83	8	58	39	10	17	32	1.84
46725760--46725905	2	78.5	2	70	16	82	49	2	2	46	1.25
46725697--46725903	102	2.0	104	98	1	400	48	2	2	45	1.32
46725952--46726012	30	2.1	29	84	9	79	52	6	6	34	1.53
46726256--46726303	20	2.6	18	73	23	53	50	8	4	37	1.52
46726687--46726749	31	2.0	31	81	6	74	39	12	7	39	1.73
46728780--46728858	39	2.0	39	97	0	149	31	20	1	46	1.58
46730902--46730931	7	4.3	7	100	0	60	16	13	30	40	1.87
46732283--46732476	23	8.3	23	80	8	180	42	21	23	12	1.87
46732283--46732476	69	2.8	68	82	12	207	42	21	23	12	1.87
46739668--46739861	23	8.3	23	80	8	180	42	21	23	12	1.87
46739668--46739861	69	2.8	68	82	12	207	42	21	23	12	1.87
46743827--46743901	29	2.5	30	83	12	93	42	4	0	53	1.19
46745173--46745206	2	17.0	2	93	0	59	47	50	2	0	1.16
46745627--46745710	6	14.5	6	85	7	75	41	1	42	14	1.53
46745627--46745737	18	6.0	18	73	11	73	40	2	42	14	1.60
46745655--46745695	21	2.0	21	90	0	64	36	2	48	12	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46752044--46752089	22	2.2	22	84	7	60	21	2	8	67	1.29
46752044--46752087	21	2.2	20	83	4	52	20	2	9	68	1.28
46752044--46752112	25	3.0	23	80	14	65	23	2	10	63	1.39
46753695--46753751	14	3.7	14	76	19	60	59	0	0	40	0.97
46757860--46757902	18	2.4	18	88	7	61	53	0	0	46	1.00
46765860--46765912	25	2.1	25	85	0	70	41	1	3	52	1.30
46765978--46766042	31	2.2	30	80	5	78	49	9	6	35	1.60
46766495--46766564	31	2.3	30	75	4	70	34	7	11	47	1.67
46798959--46798997	20	2.1	18	85	9	51	23	5	2	69	1.21
46804129--46804190	30	2.1	30	96	0	115	19	50	17	12	1.78
46812878--46812908	14	2.3	14	94	5	55	58	0	3	38	1.15
46815656--46815698	18	2.4	18	80	11	52	48	0	0	51	1.00
46833159--46833183	3	8.3	3	100	0	50	32	0	0	68	0.90
46836357--46836407	25	2.0	25	100	0	102	27	17	7	47	1.75
46843234--46843282	20	2.5	20	72	0	53	63	0	0	36	0.95
46849688--46849721	13	2.6	13	90	0	50	8	14	0	76	1.01
46849668--46849721	26	2.1	26	86	10	76	5	16	0	77	0.94
46853741--46854086	172	2.0	172	96	0	638	38	18	13	29	1.89
46869181--46869232	24	2.2	23	82	3	68	36	0	3	59	1.16
46869559--46869617	25	2.4	25	82	5	75	38	1	6	52	1.38
46890530--46890617	15	6.0	14	68	17	54	47	0	2	50	1.13
46894198--46894343	58	2.5	58	81	11	174	45	2	1	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46894513--46894566	16	3.4	16	94	0	90	27	31	1	38	1.67
46908379--46908439	29	2.0	31	81	6	72	44	8	4	42	1.55
46924743--46924780	20	1.9	20	88	0	58	34	2	0	63	1.09
46924902--46924946	2	22.5	2	100	0	90	48	0	0	51	1.00
46926596--46926665	32	2.2	32	82	7	81	62	4	0	32	1.14
46927700--46927733	17	1.9	18	88	5	52	70	0	0	29	0.87
46928464--46928511	18	2.6	18	77	12	53	47	8	0	43	1.33
46936148--46936314	58	2.9	58	85	5	230	53	1	0	44	1.12
46936283--46936333	24	2.1	24	82	10	59	60	0	1	37	1.08
46939428--46939465	20	1.9	20	88	0	58	60	0	2	36	1.11
46940449--46940492	20	2.2	20	84	12	54	34	6	0	59	1.24
46940466--46940522	30	1.9	30	85	7	80	38	0	0	61	0.96
46943595--46943647	15	3.3	15	82	12	61	0	43	0	56	0.99
46943595--46943640	18	2.6	18	86	3	58	0	39	0	60	0.97
46943598--46943665	12	5.1	14	71	26	51	0	45	0	54	0.99
46944703--46944803	51	2.0	51	98	0	193	39	12	5	41	1.68
46961299--46961415	53	2.2	52	92	1	189	37	14	5	41	1.70
46961299--46961432	53	2.5	53	87	2	144	38	14	6	41	1.72
46980179--46980220	3	14.0	3	100	0	84	33	0	0	66	0.92
46980986--46981076	45	1.9	45	82	14	112	42	8	9	38	1.69
46987698--46987770	35	2.1	35	100	0	146	34	8	13	43	1.74
46995061--46995147	45	1.9	45	92	0	147	49	9	22	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47000594--47000758	79	2.1	80	88	4	246	47	20	5	26	1.72
47011517--47011575	31	1.9	31	86	6	84	45	10	18	25	1.81
47011439--47011612	92	1.9	92	85	3	242	48	11	16	23	1.79
47011530--47011633	30	3.5	30	74	13	106	46	12	16	25	1.82
47016138--47016175	18	2.1	18	90	9	60	36	5	0	57	1.21
47019141--47019484	188	1.8	190	82	3	453	22	10	15	50	1.76
47019328--47019642	112	2.8	112	86	3	438	24	9	16	49	1.76
47022926--47022960	18	2.1	18	89	10	56	65	2	2	28	1.21
47026541--47026603	33	1.9	33	96	0	117	30	20	26	22	1.98
47026548--47026612	33	2.2	29	81	15	71	29	23	29	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163