genome.fa.s8.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  6  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1827407--1827445	19	2.1	19	100	0	78	41	0	20	38	1.53
1828002--1828039	16	2.4	16	91	8	60	68	0	15	15	1.22
1828000--1828057	17	3.4	16	82	15	64	70	0	17	12	1.16
1828316--1828415	47	2.1	47	86	0	137	56	8	7	29	1.55
1828673--1828710	16	2.4	16	91	8	60	68	0	15	15	1.22
1828672--1828728	17	3.4	16	81	15	62	71	0	15	12	1.13
1827911--1829255	671	2.0	670	99	0	2654	45	11	13	29	1.78
1828987--1829086	47	2.1	47	86	0	137	56	8	7	29	1.55
1837624--1837656	17	1.9	17	93	0	57	18	15	21	45	1.85
1837641--1837728	36	2.4	36	92	0	149	31	7	20	39	1.81
1838753--1839378	126	5.0	126	93	0	1036	31	22	17	28	1.97
1841463--1841506	14	3.3	14	78	12	56	38	0	6	54	1.27
1842507--1842773	78	3.4	78	95	1	464	32	16	27	22	1.96
1843010--1843041	15	2.1	15	94	0	55	43	15	12	28	1.83
1847405--1847436	15	2.1	15	100	0	64	40	18	12	28	1.87
1847686--1847981	81	3.7	81	93	0	502	20	23	17	38	1.93
1849509--1849826	163	2.0	163	89	2	487	30	16	15	37	1.90
1851408--1851451	14	3.3	14	78	12	56	38	0	6	54	1.27
1852243--1852275	17	1.9	17	93	0	57	18	15	21	45	1.85
1852260--1852347	36	2.4	36	92	0	149	31	7	20	39	1.81
1853582--1853641	28	2.1	28	84	3	75	43	5	3	48	1.41
1855496--1855674	88	2.0	89	83	9	224	37	18	7	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855705--1855759	18	3.0	18	84	7	58	54	0	1	43	1.10
1855723--1855767	18	2.5	18	88	0	63	53	2	0	44	1.13
1856018--1856226	9	22.0	9	65	18	70	32	3	2	61	1.29
1856050--1856094	21	2.1	21	84	8	56	26	4	4	64	1.32
1856085--1856110	13	2.0	13	100	0	52	53	0	0	46	1.00
1856041--1856154	59	1.9	61	84	10	155	34	2	3	59	1.28
1856107--1856228	19	6.5	19	78	8	92	31	3	2	63	1.24
1856267--1856436	88	1.9	90	80	3	200	37	8	15	38	1.78
1857835--1858449	126	4.9	126	94	0	1050	31	22	18	28	1.97
1859178--1859228	21	2.4	21	80	3	57	37	3	1	56	1.29
1860544--1860587	14	3.3	14	78	12	56	38	0	6	54	1.27
1861590--1861860	78	3.5	78	93	1	445	31	17	28	23	1.97
1862112--1862143	15	2.1	15	94	0	55	43	15	12	28	1.83
1863948--1863978	12	2.6	12	89	0	53	25	16	25	32	1.96
1865825--1865865	22	1.9	22	90	5	66	26	0	0	73	0.84
1865840--1865873	17	2.0	17	94	0	59	26	0	0	73	0.83
1865823--1865880	24	2.6	23	81	8	66	34	0	0	65	0.93
1866384--1866426	21	2.0	21	90	0	68	41	11	0	46	1.40
1867271--1867305	18	1.9	18	100	0	70	22	0	37	40	1.55
1867385--1867414	4	7.5	4	92	0	51	46	23	3	26	1.68
1867385--1867427	8	5.4	8	91	0	59	41	23	9	25	1.84
1867385--1867427	12	3.6	12	87	0	59	41	23	9	25	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1869937--1870028	32	3.0	32	71	20	88	26	3	3	67	1.21
1869934--1870030	28	3.3	28	75	12	88	24	3	3	69	1.18
1870136--1870168	11	3.1	11	82	8	50	81	3	0	15	0.80
1870410--1870475	21	2.9	22	86	13	89	66	0	0	33	0.92
1870423--1870474	8	6.9	8	78	22	51	67	0	0	32	0.91
1872725--1872754	15	2.0	15	100	0	60	20	6	6	66	1.38
1873270--1873387	57	2.1	56	87	4	166	27	6	16	50	1.70
1873789--1873830	22	1.9	22	85	0	57	26	16	9	47	1.77
1875912--1875950	6	6.5	6	87	0	51	51	0	25	23	1.49
1876409--1876472	32	2.0	32	100	0	128	37	12	12	37	1.81
1881147--1881258	58	1.9	58	82	7	138	26	8	13	51	1.68
1886403--1886459	24	2.4	25	88	5	91	29	1	3	64	1.20
1886405--1886455	25	2.0	25	92	0	84	25	1	3	68	1.17
1890943--1891002	31	2.0	31	83	9	79	40	10	10	40	1.72
1891333--1891392	29	2.1	29	87	0	84	48	11	5	35	1.61
1895847--1895884	17	2.2	17	86	9	51	0	18	0	81	0.69
1899849--1899881	2	16.5	2	100	0	66	48	0	0	51	1.00
1907579--1907612	3	11.3	3	100	0	68	32	0	0	67	0.91
1907741--1907801	5	11.8	5	92	3	95	60	1	0	37	1.07
1917936--1917978	11	3.8	11	87	6	59	44	0	0	55	0.99
1917936--1917984	23	2.1	23	88	0	71	46	0	0	53	1.00
1917936--1917991	17	3.3	17	82	5	60	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917936--1917984	6	8.5	6	80	8	57	46	0	0	53	1.00
1917936--1917984	11	4.2	12	84	7	57	46	0	0	53	1.00
1918713--1918742	13	2.2	14	94	5	53	46	0	0	53	1.00
1918728--1918765	18	2.1	18	95	0	67	60	0	0	39	0.97
1928423--1928583	29	5.6	29	93	1	261	32	0	23	43	1.54
1934571--1934660	29	3.0	29	85	8	101	55	7	3	33	1.45
1934585--1934660	31	2.5	29	87	6	98	55	9	2	32	1.46
1936190--1936289	45	2.2	46	91	5	161	44	23	14	19	1.86
1938228--1938256	6	4.8	6	100	0	58	31	51	0	17	1.45
1939473--1939524	26	2.0	26	85	7	70	65	3	0	30	1.10
1945037--1945081	3	15.0	3	100	0	90	33	0	0	66	0.92
1945298--1945368	23	3.0	23	72	8	79	54	4	25	15	1.59
1947550--1947614	33	2.0	32	85	8	87	40	3	1	55	1.25
1949785--1949830	24	1.9	24	95	0	83	19	13	15	52	1.75
1949790--1949831	12	3.5	12	75	12	50	19	11	14	54	1.70
1949916--1949960	12	3.8	12	79	8	56	24	17	20	37	1.93
1950196--1950232	19	2.0	18	94	5	65	51	0	0	48	1.00
1950197--1950251	26	2.1	26	86	0	74	50	1	0	47	1.11
1951818--1951856	20	2.0	20	89	0	60	61	0	2	35	1.10
1952536--1952577	18	2.5	17	81	11	50	66	0	0	33	0.92
1954912--1954949	19	2.0	19	94	0	67	13	18	31	36	1.89
1970326--1970379	22	2.5	21	80	11	65	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1971768--1971820	26	2.0	26	100	0	106	33	22	3	39	1.72
1972575--1973075	249	2.0	249	98	0	975	35	22	20	21	1.96
1972888--1973139	126	2.0	127	90	4	398	33	22	17	26	1.96
1977529--1977579	25	2.0	25	100	0	102	33	19	7	39	1.81
1979936--1980583	147	4.4	147	80	9	653	37	16	15	30	1.90
1981036--1981071	14	2.6	14	100	0	72	36	8	5	50	1.56
1984932--1984979	24	2.0	24	83	4	60	41	4	4	50	1.41
1986056--1986097	13	3.2	13	77	16	50	35	0	7	57	1.26
1990967--1990999	16	2.1	16	100	0	66	45	18	6	30	1.73
1991119--1991177	29	2.0	30	90	3	93	61	13	0	25	1.33
1993017--1993060	16	2.9	15	80	12	54	50	13	4	31	1.62
1998390--1998419	2	15.0	2	100	0	60	50	0	0	50	1.00
2005016--2005465	150	3.0	150	99	0	891	34	22	8	34	1.85
2007513--2007568	25	2.2	25	96	0	103	33	14	1	50	1.53
2008345--2008420	29	2.7	26	77	16	71	38	2	1	57	1.21
2015624--2015706	23	3.6	23	75	1	85	45	19	10	24	1.82
2015793--2015862	12	6.0	11	80	6	59	42	15	18	22	1.88
2015792--2015860	24	2.9	24	86	2	95	44	15	18	20	1.86
2016687--2016721	15	2.5	13	86	13	52	22	0	0	77	0.78
2018005--2018061	26	2.3	24	85	8	78	54	0	1	43	1.10
2028644--2028669	12	2.2	12	100	0	52	53	15	23	7	1.67
2028753--2028806	13	3.9	13	72	13	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2029661--2029810	59	2.5	57	79	14	169	25	13	9	52	1.70
2044242--2044287	3	15.3	3	95	0	83	32	2	0	65	1.05
2044729--2044759	7	4.3	7	95	4	53	80	0	0	19	0.71
2045225--2045252	5	5.6	5	100	0	56	64	0	0	35	0.94
2045225--2045264	15	2.7	15	88	7	55	65	0	0	35	0.93
2045299--2045354	25	2.2	27	78	18	75	73	7	0	19	1.06
2046509--2046558	23	2.3	22	80	12	59	30	0	4	66	1.10
2046509--2046566	20	2.7	22	77	12	59	32	0	3	63	1.11
2058408--2058524	54	2.2	54	96	0	216	24	12	16	46	1.82
2061621--2061650	16	1.9	15	93	6	51	33	23	10	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163