genome.fa.s8.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  112  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31476492--31476517	12	2.2	12	100	0	52	30	53	7	7	1.57
31485620--31485658	21	1.9	20	89	5	60	28	2	33	35	1.71
31485592--31485687	50	1.9	49	83	10	124	29	2	32	36	1.69
31485640--31485940	30	10.1	30	79	8	240	37	2	24	34	1.71
31485683--31485916	89	2.6	90	80	4	267	38	2	23	34	1.69
31485683--31485940	119	2.2	118	83	5	315	39	3	22	34	1.70
31490693--31490745	19	2.8	20	77	13	58	28	5	0	66	1.15
31494305--31494336	10	3.1	10	95	4	55	62	0	0	37	0.95
31495300--31495349	21	2.4	22	75	18	61	34	0	4	62	1.14
31495911--31495963	21	2.5	20	82	8	70	50	7	1	39	1.41
31495919--31495973	21	2.6	21	82	2	65	58	7	0	34	1.26
31496125--31496292	57	2.9	57	81	5	194	26	15	10	47	1.78
31500629--31500906	29	9.5	30	70	17	192	34	2	29	32	1.71
31500622--31500932	58	5.4	57	85	6	403	34	2	30	33	1.70
31500623--31500932	117	2.7	116	85	7	425	34	2	30	32	1.70
31500623--31500937	29	10.9	28	70	17	150	34	2	30	32	1.70
31500886--31500959	29	2.6	31	81	16	72	35	2	27	35	1.71
31500903--31500994	29	3.2	29	79	11	100	33	5	22	38	1.77
31502953--31503041	6	15.8	6	74	15	66	52	4	0	42	1.21
31502952--31503036	5	15.6	5	74	20	64	52	4	0	42	1.22
31502953--31503048	17	5.8	16	79	10	95	52	4	1	42	1.27
31502936--31503034	44	2.2	44	84	10	121	54	5	0	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31503312--31503565	91	2.8	89	91	2	418	29	17	19	33	1.94
31503497--31503749	38	6.7	37	72	15	196	32	18	15	33	1.92
31503492--31503751	76	3.4	76	95	0	466	32	18	15	34	1.92
31503820--31503972	50	3.1	50	65	9	123	15	24	20	39	1.91
31503757--31503972	100	2.1	101	86	2	292	12	25	20	40	1.88
31515947--31516039	31	3.0	31	75	16	95	27	2	38	31	1.69
31515889--31516082	59	3.4	57	81	7	221	34	2	30	31	1.72
31516053--31516112	30	2.0	30	84	12	79	31	3	25	40	1.72
31518065--31518153	6	15.8	6	75	15	75	53	3	1	41	1.24
31518065--31518146	11	7.4	11	79	15	80	54	3	1	40	1.26
31518064--31518148	5	15.6	5	76	20	73	54	3	1	41	1.25
31518065--31518160	17	5.8	16	82	10	104	53	3	2	41	1.28
31518047--31518146	44	2.2	44	86	10	132	55	4	1	40	1.26
31519725--31519767	18	2.5	17	88	7	68	20	0	2	76	0.89
31519735--31519775	17	2.3	18	87	4	57	14	4	2	78	1.03
31519802--31519845	2	23.0	2	90	9	74	47	0	0	52	1.00
31519802--31519845	15	3.0	15	96	3	81	47	0	0	52	1.00
31519854--31519890	18	2.0	19	85	15	51	32	2	5	59	1.34
31527225--31528825	802	2.0	802	94	1	2807	32	15	22	29	1.95
31530971--31531050	29	2.7	29	77	12	83	55	5	0	40	1.22
31530982--31531046	29	2.2	31	86	5	89	53	4	0	41	1.21
31531973--31532057	35	2.4	35	94	0	143	40	12	25	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31533523--31533560	6	6.3	6	90	0	58	18	13	15	52	1.74
31538684--31538735	18	2.9	18	73	0	50	13	13	17	55	1.69
31545108--31545535	30	14.3	30	84	4	474	36	25	1	36	1.64
31547443--31547480	19	2.0	19	89	0	58	55	5	18	21	1.62
31547935--31548018	23	3.6	22	75	9	78	67	14	5	11	1.39
31548023--31548079	18	3.0	18	76	18	62	73	21	1	3	1.07
31548015--31548102	21	4.2	22	75	17	80	71	21	3	3	1.16
31548015--31548113	22	4.7	21	77	15	80	69	22	3	5	1.22
31548015--31548113	43	2.4	40	83	6	117	69	22	3	5	1.22
31550428--31550499	23	3.1	22	76	13	74	44	5	1	48	1.34
31551592--31551637	23	2.0	24	86	4	67	34	45	2	17	1.61
31552734--31552939	30	7.0	30	72	10	165	34	2	22	39	1.69
31552778--31552939	61	2.7	59	84	4	218	32	3	23	40	1.70
31554667--31554806	48	2.9	48	84	0	181	24	20	15	40	1.91
31554561--31554928	171	2.1	172	83	5	442	24	23	15	37	1.93
31555020--31555173	42	3.8	41	82	8	197	26	17	28	27	1.98
31555012--31555191	80	2.2	82	87	2	249	25	19	26	28	1.99
31555154--31555504	41	8.6	41	83	2	402	28	15	20	34	1.94
31555154--31555502	163	2.1	164	85	2	470	28	16	20	34	1.94
31555755--31556569	98	8.3	99	73	7	373	19	29	15	35	1.93
31555788--31556369	98	5.9	97	74	7	408	19	29	15	34	1.94
31555895--31556508	294	2.1	294	84	3	804	19	29	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31556201--31556417	48	4.5	48	73	10	145	19	33	14	32	1.92
31555895--31556508	147	4.2	146	82	3	676	19	29	15	35	1.93
31556398--31556569	50	3.4	49	72	12	152	19	30	12	37	1.89
31562845--31562983	29	4.8	28	73	16	113	38	1	16	43	1.57
31562844--31562987	58	2.5	60	84	10	190	37	1	17	43	1.58
31562784--31562987	30	6.9	30	74	11	154	37	1	19	41	1.62
31564785--31564809	13	1.9	13	100	0	50	12	40	24	24	1.88
31565438--31565488	24	2.1	24	85	0	66	74	11	9	3	1.19
31566173--31566707	264	2.0	264	96	0	989	32	26	10	29	1.90
31578240--31578286	24	2.0	23	91	4	76	44	4	0	51	1.21
31580789--31581169	191	2.0	189	95	4	694	44	8	3	43	1.51
31586988--31587014	14	1.9	14	100	0	54	74	0	25	0	0.83
31590122--31590167	19	2.3	20	85	3	58	43	0	8	47	1.34
31591699--31591735	18	2.1	18	89	0	56	24	24	2	48	1.64
31595194--31595301	31	3.5	31	75	14	109	27	14	9	48	1.75
31595206--31595354	58	2.5	60	86	7	200	26	16	10	45	1.80
31595578--31595659	32	2.6	32	79	9	89	48	8	13	29	1.72
31595578--31595640	30	2.0	32	84	9	85	52	7	12	26	1.67
31597420--31597513	31	3.0	31	84	4	109	25	17	2	55	1.53
31597460--31597512	16	3.3	16	74	10	54	18	22	1	56	1.51
31603758--31603787	12	2.4	13	94	5	53	30	0	0	70	0.88
31608946--31609019	6	13.0	6	79	12	77	43	1	1	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31608945--31609021	17	4.5	17	86	1	91	42	1	1	54	1.16
31608945--31609018	28	2.6	29	82	6	89	41	1	1	55	1.17
31608953--31609018	11	6.0	11	81	11	66	42	1	0	56	1.08
31608959--31609029	17	4.2	16	85	8	54	45	1	0	53	1.09
31609920--31609952	17	2.0	17	88	5	50	15	45	12	27	1.81
31611023--31611179	30	5.3	31	73	15	134	37	24	2	35	1.69
31611000--31611211	30	7.1	29	72	14	121	37	24	2	36	1.68
31611035--31611209	58	3.0	57	79	7	156	37	23	1	37	1.65
31611130--31611206	29	2.6	30	76	17	81	36	19	0	44	1.51
31624002--31624243	40	5.5	40	64	26	114	31	14	19	33	1.93
31623066--31624348	92	13.9	92	94	0	2206	33	15	18	32	1.93
31624606--31624650	6	8.0	6	79	20	53	46	0	2	51	1.13
31624606--31624650	16	2.8	16	93	3	72	46	0	2	51	1.13
31624624--31624666	16	2.6	16	85	3	50	53	2	0	44	1.13
31627919--31627945	7	3.9	7	100	0	54	40	14	29	14	1.86
31629669--31629695	6	4.5	6	100	0	54	18	48	0	33	1.49
31631019--31631119	40	2.5	40	84	6	125	53	0	0	45	1.07
31631050--31631118	11	6.8	11	76	15	53	56	0	0	43	0.99
31631956--31632004	6	7.8	6	77	8	53	34	0	63	2	1.06
31631956--31631994	20	2.0	20	89	0	60	35	0	64	0	0.94
31632053--31632095	14	3.0	15	73	13	54	44	0	0	55	0.99
31632037--31632128	9	9.7	9	73	24	66	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31632084--31632126	21	2.0	21	91	8	70	51	0	0	48	1.00
31632035--31632128	28	3.3	29	85	12	140	46	0	0	53	1.00
31632541--31632586	24	1.9	23	86	8	65	67	0	0	32	0.91
31633360--31633393	15	2.3	15	90	10	52	17	14	0	67	1.23
31633920--31633981	23	2.7	23	77	2	72	50	1	1	46	1.20
31637711--31637735	13	1.9	13	100	0	50	24	12	16	48	1.79
31641424--31641457	16	2.1	17	88	5	52	29	0	20	50	1.49
31644097--31644335	29	8.3	29	78	2	180	51	10	16	21	1.74
31646087--31646274	26	7.2	26	73	7	148	28	22	17	31	1.96
31646103--31646269	52	3.2	52	74	8	169	29	22	16	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163