genome.fa.s8.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  48  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11853436--11853672	30	7.9	30	81	7	243	38	27	2	32	1.68
11861734--11861926	96	2.0	97	82	8	234	38	14	18	28	1.90
11862140--11862352	29	7.3	29	78	9	193	31	9	26	31	1.89
11862219--11862349	58	2.3	58	93	2	219	33	9	24	32	1.88
11862240--11862466	29	7.8	29	74	13	148	34	7	25	33	1.84
11862361--11862585	29	7.7	28	70	16	111	36	4	24	35	1.75
11862276--11862584	59	5.3	58	78	10	247	36	5	23	34	1.78
11863733--11863789	19	3.2	17	75	20	53	36	3	1	57	1.26
11864478--11864587	6	19.5	6	67	15	56	50	5	3	40	1.43
11864494--11864584	17	5.4	17	77	2	94	53	6	3	36	1.43
11864480--11864522	22	2.0	22	86	9	61	53	0	2	44	1.13
11864498--11864586	34	2.7	33	80	1	106	53	6	3	35	1.44
11874547--11874579	12	2.6	13	85	9	50	57	15	24	3	1.52
11875940--11876107	30	5.6	30	87	0	201	35	25	3	35	1.74
11875940--11876132	60	3.2	59	79	2	215	34	24	3	37	1.73
11875940--11876132	90	2.1	89	76	8	210	34	24	3	37	1.73
11880640--11880678	19	2.1	19	90	4	62	56	5	0	38	1.22
11880640--11880689	19	2.5	20	84	12	59	56	6	0	38	1.24
11880701--11880766	20	3.4	19	77	8	71	66	4	1	27	1.20
11881061--11881094	3	11.3	3	100	0	68	32	0	0	67	0.91
11882041--11882086	19	2.4	19	85	3	56	65	0	6	28	1.17
11887624--11887652	9	3.3	9	90	9	51	48	0	31	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11892656--11892812	30	5.2	30	81	6	158	36	4	26	32	1.77
11892656--11892828	60	2.9	59	78	6	177	35	4	26	34	1.75
11892632--11892824	30	6.4	30	79	4	156	37	4	24	33	1.75
11894186--11894223	13	2.9	14	84	11	53	2	23	15	57	1.51
11896673--11896841	30	5.6	30	86	4	198	36	4	24	34	1.75
11907852--11907892	16	2.5	16	88	4	55	41	4	2	51	1.36
11907853--11907943	17	5.4	17	80	1	94	36	3	6	53	1.43
11907850--11907959	6	19.5	6	71	15	56	40	3	5	50	1.43
11908658--11908706	19	2.6	18	76	20	55	61	2	2	34	1.19
11909841--11910072	29	8.0	27	70	11	131	35	24	3	36	1.74
11909853--11910099	57	4.3	56	80	8	239	35	23	4	37	1.74
11909999--11910099	28	3.5	28	75	9	96	37	19	3	38	1.71
11910084--11910235	28	5.2	28	77	13	148	33	27	8	30	1.87
11910084--11910235	30	5.2	30	76	9	147	33	27	8	30	1.87
11923226--11923285	28	2.1	28	84	0	75	25	10	31	33	1.89
11923237--11923501	29	9.0	30	74	13	214	33	5	27	32	1.79
11923254--11923492	59	4.1	59	87	5	324	33	4	26	34	1.77
11929465--11929678	30	7.2	30	81	12	203	31	2	26	39	1.69
11929465--11929678	60	3.6	61	80	14	241	31	2	26	39	1.69
11931793--11932536	39	19.0	39	71	3	355	25	19	30	25	1.98
11931861--11932573	78	9.2	77	82	4	714	25	18	30	24	1.98
11931876--11932573	156	4.5	156	83	2	787	25	19	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11932403--11932652	117	2.1	117	80	5	272	27	19	29	23	1.98
11937115--11937153	7	5.7	7	96	3	71	25	0	0	74	0.82
11948482--11948514	12	2.6	13	85	9	50	57	15	24	3	1.52
11949533--11949700	30	5.6	30	86	2	203	34	25	4	36	1.75
11949533--11949725	60	3.2	60	80	2	226	33	24	4	37	1.75
11949533--11949725	90	2.1	89	76	8	210	33	24	4	37	1.75
11952153--11952185	12	2.6	13	85	9	50	57	15	24	3	1.52
11953541--11953739	30	6.6	30	81	5	168	33	25	4	37	1.75
11953547--11953739	60	3.2	60	79	4	201	33	24	4	37	1.75
11957864--11957902	19	2.1	19	90	4	62	56	5	0	38	1.22
11957891--11957941	26	2.0	26	84	0	66	54	1	0	43	1.11
11957926--11957991	20	3.4	19	77	8	71	66	4	1	27	1.20
11958289--11958322	3	11.3	3	100	0	68	32	0	0	67	0.91
11970923--11970951	2	14.5	2	100	0	58	48	0	0	51	1.00
11971704--11971742	7	5.7	7	93	6	71	74	0	0	25	0.82
11976323--11976998	39	17.4	38	70	13	329	24	30	19	25	1.98
11976323--11977057	78	9.4	78	82	4	730	25	30	19	25	1.98
11976208--11976429	117	1.9	117	83	1	293	24	28	18	27	1.98
11976207--11976456	117	2.1	116	80	4	270	23	29	19	27	1.98
11976946--11977057	42	2.8	39	79	4	116	28	29	16	25	1.97
11979182--11979395	30	7.2	30	77	10	172	39	26	2	31	1.69
11979182--11979395	60	3.6	59	81	12	242	39	26	2	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11985358--11985587	29	7.8	29	71	15	161	33	26	4	35	1.76
11985358--11985609	30	8.6	30	71	13	186	34	26	4	34	1.78
11985367--11985599	59	3.9	59	88	5	330	33	26	4	34	1.78
11985367--11985643	29	9.5	29	72	12	131	33	27	5	33	1.80
11992524--11992574	21	2.5	19	84	9	57	60	7	0	31	1.25
11998799--11998986	94	2.0	94	95	0	340	28	7	23	39	1.83
12000896--12001382	30	16.5	28	75	11	309	36	2	24	36	1.70
12002302--12002374	32	2.3	30	79	9	83	63	4	2	30	1.27
12003384--12004144	39	19.5	39	69	12	334	26	18	29	25	1.98
12003298--12003560	117	2.3	115	83	2	319	25	19	29	25	1.99
12003309--12004141	156	5.4	155	74	8	633	26	18	29	25	1.98
12004038--12004180	39	3.7	38	77	13	132	28	20	26	24	1.99
12003614--12004180	78	7.3	78	81	6	596	27	19	28	24	1.99
12004171--12004267	41	2.4	40	87	5	149	34	16	15	34	1.90
12004421--12004760	50	6.9	50	76	6	257	18	30	16	33	1.94
12004434--12004756	97	3.3	95	78	10	278	18	31	17	33	1.94
12005665--12005734	6	11.2	6	73	15	54	4	18	0	77	0.93
12005662--12005730	34	2.0	34	83	10	88	4	20	0	75	0.97
12010514--12010834	30	10.8	30	81	5	310	36	1	23	38	1.63
12011543--12011573	16	1.9	16	100	0	62	19	9	6	64	1.45
12013043--12013099	26	2.2	26	90	0	96	21	7	29	42	1.79
12014375--12014413	3	13.0	3	100	0	78	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12016548--12016679	39	3.4	39	81	2	158	28	15	19	35	1.93
12016667--12016845	39	4.6	39	75	5	164	26	21	18	33	1.96
12016667--12016848	78	2.3	79	88	1	260	25	20	19	33	1.97
12017075--12017288	64	3.3	63	84	1	257	25	32	16	25	1.96
12019124--12019176	24	2.2	24	86	0	70	50	3	0	45	1.19
12029159--12029258	30	3.3	29	68	21	78	45	10	15	30	1.78
12031681--12031709	5	5.8	5	100	0	58	20	0	0	79	0.74
12032360--12032487	64	2.0	64	100	0	256	34	29	15	20	1.94
12035770--12035813	2	22.5	2	83	4	54	45	0	0	54	0.99
12035782--12035815	17	2.0	17	88	0	50	41	0	0	58	0.98
12037464--12037580	58	2.0	58	98	0	225	15	23	18	42	1.88
12040861--12040911	21	2.5	21	81	6	61	62	1	5	29	1.29
12049845--12049886	15	2.8	16	76	23	54	59	2	0	38	1.10
12050523--12050562	18	2.2	18	86	0	53	27	5	10	57	1.52
12054009--12054073	31	2.1	31	97	0	121	43	4	24	27	1.74
12063192--12063249	30	2.0	30	86	3	82	46	3	6	43	1.47
12063617--12063661	2	22.5	2	100	0	90	48	0	0	51	1.00
12066811--12066911	24	4.2	24	75	8	80	25	17	21	34	1.96
12082082--12082142	27	2.3	26	81	16	63	67	1	26	4	1.20
12082097--12082157	27	2.2	29	75	21	69	67	1	26	4	1.20
12085578--12085629	23	2.3	23	79	0	68	38	15	30	15	1.88
12098238--12098417	61	2.9	61	79	4	184	36	5	15	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12108079--12108120	17	2.5	16	82	14	57	71	0	0	28	0.86
12108080--12108120	18	2.3	18	91	4	66	73	0	0	26	0.84
12109800--12109847	23	2.1	22	88	3	69	16	2	4	77	1.03
12109856--12109921	24	2.8	24	81	6	73	6	21	21	51	1.69
12112791--12112828	18	2.1	18	100	0	76	31	10	28	28	1.90
12113903--12113957	27	2.0	27	89	0	83	34	10	27	27	1.90
12114245--12114297	12	4.4	12	79	11	56	79	9	9	1	1.02
12115840--12116176	56	6.0	56	82	5	389	27	26	10	36	1.89
12115864--12116176	112	2.8	111	88	2	450	27	25	10	36	1.88
12116033--12116115	27	3.0	27	63	6	67	25	28	9	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163