genome.fa.s8.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  142  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38478890--38478926	14	2.4	16	82	13	51	29	5	8	56	1.51
38479065--38479096	17	2.0	17	88	11	50	6	3	15	75	1.14
38479302--38479330	8	3.8	8	95	4	51	65	0	0	34	0.93
38480588--38480635	18	2.7	18	83	6	53	60	4	4	31	1.35
38480606--38480645	18	2.2	18	86	8	55	60	5	0	35	1.19
38480631--38480676	12	4.0	12	72	11	51	60	2	0	36	1.09
38481094--38481139	21	2.1	23	88	8	69	43	4	6	45	1.49
38481472--38481522	20	2.5	20	90	0	84	60	3	0	35	1.15
38484976--38485025	3	17.0	3	83	4	66	0	62	0	38	0.96
38484975--38485035	6	10.2	6	89	0	68	0	59	0	40	0.98
38505785--38505822	7	5.4	7	100	0	76	42	0	57	0	0.98
38514491--38514516	6	4.3	6	100	0	52	34	0	50	15	1.45
38523369--38523427	24	2.5	24	81	8	68	74	1	1	22	1.00
38523671--38523701	6	5.0	6	96	4	53	67	0	0	32	0.91
38529859--38529885	13	2.1	13	100	0	54	33	0	0	66	0.92
38532989--38533043	23	2.3	24	84	3	67	52	3	18	25	1.61
38534113--38534267	58	2.7	58	89	0	229	36	0	18	45	1.50
38538551--38538602	28	2.0	25	81	11	59	44	1	0	53	1.11
38547225--38547272	18	2.7	18	83	0	60	22	27	0	50	1.50
38547225--38547269	6	7.5	6	87	0	54	22	28	0	48	1.50
38547370--38547405	19	1.9	19	88	5	56	61	0	5	33	1.19
38551887--38551932	20	2.3	20	80	0	56	41	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38555123--38555186	16	3.8	16	81	6	65	46	1	3	48	1.27
38555121--38555236	6	20.3	6	72	13	75	43	1	5	50	1.35
38555121--38555236	11	10.2	12	74	13	75	43	1	5	50	1.35
38555122--38555236	17	6.8	17	76	6	74	43	1	5	49	1.35
38556009--38556050	15	2.7	16	81	3	50	61	2	0	35	1.09
38563320--38563363	14	3.2	14	84	9	56	68	2	27	2	1.14
38566771--38567266	75	6.6	75	93	0	812	33	15	17	33	1.92
38568101--38568145	16	2.8	16	82	3	54	46	0	4	48	1.22
38568099--38568208	6	19.3	6	71	14	63	42	1	5	50	1.36
38568099--38568208	17	6.5	16	72	10	67	42	1	5	50	1.36
38568559--38568592	11	3.1	11	91	8	52	91	0	8	0	0.43
38568986--38569027	15	2.7	16	81	3	50	61	2	0	35	1.09
38570071--38570259	29	6.5	28	76	12	114	34	26	2	35	1.71
38570141--38570290	28	5.1	29	75	14	121	32	28	3	36	1.73
38570072--38570295	59	3.8	58	81	5	247	33	28	3	35	1.74
38570101--38570332	116	2.0	119	81	7	278	31	28	5	35	1.79
38575627--38575668	12	3.2	13	86	10	50	64	4	4	26	1.33
38575653--38575713	24	2.5	25	86	5	97	60	0	3	36	1.13
38575664--38575708	14	3.5	14	71	22	53	60	0	0	40	0.97
38576986--38577258	136	2.0	135	94	0	483	37	11	16	34	1.85
38587432--38587476	19	2.4	19	82	17	67	66	0	0	33	0.92
38587405--38587480	28	2.7	29	84	9	88	63	2	1	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38587432--38587476	18	2.4	19	85	14	67	66	0	0	33	0.92
38587694--38587829	59	2.4	59	90	6	217	50	0	2	47	1.13
38592618--38592686	31	2.2	31	79	5	77	36	11	10	42	1.75
38604987--38605055	33	2.1	32	83	2	84	36	15	4	43	1.67
38619064--38619134	32	2.2	32	90	7	108	30	4	11	53	1.55
38620452--38620478	2	13.5	2	100	0	54	48	0	0	51	1.00
38622178--38622217	21	1.9	21	84	0	53	27	7	25	40	1.82
38626396--38626443	17	2.7	17	83	6	51	37	0	2	60	1.09
38627041--38627077	11	3.4	11	96	0	65	48	0	51	0	1.00
38627584--38627955	29	12.7	30	85	8	432	36	25	1	36	1.65
38627584--38627991	116	3.5	113	84	9	479	36	26	1	35	1.68
38627590--38628004	29	14.3	27	81	10	307	36	25	1	36	1.68
38631501--38631552	23	2.3	23	89	0	77	25	46	11	17	1.81
38631892--38631923	14	2.2	15	94	5	57	40	0	0	59	0.97
38631894--38631942	22	2.2	22	78	7	55	34	2	0	63	1.06
38633012--38633268	30	8.7	30	73	11	181	35	22	2	39	1.67
38633009--38633268	29	8.8	30	71	13	155	35	23	2	39	1.67
38633003--38633289	118	2.4	117	75	9	287	34	22	2	39	1.68
38646980--38647032	23	2.3	23	83	6	63	62	0	3	33	1.13
38673075--38673115	21	2.0	21	85	0	55	34	7	4	53	1.50
38673710--38673785	37	2.0	38	85	7	102	50	1	13	35	1.50
38685153--38685228	26	2.7	29	76	23	81	56	0	1	42	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38696217--38696250	17	2.0	17	88	11	52	52	20	0	26	1.46
38709397--38709469	32	2.2	32	79	9	76	63	5	4	27	1.35
38714314--38714355	6	7.0	6	100	0	84	16	83	0	0	0.65
38715594--38715666	29	2.5	28	82	8	83	42	16	15	26	1.87
38719971--38720004	12	2.6	13	86	13	52	38	5	29	26	1.80
38726793--38726835	22	1.9	23	85	4	61	27	44	18	9	1.80
38726843--38726890	20	2.4	20	85	0	69	14	16	22	45	1.84
38734975--38735018	16	2.8	16	96	0	79	40	0	29	29	1.57
38734973--38735028	16	3.5	16	87	4	78	37	3	28	30	1.74
38735010--38735103	44	2.1	46	86	11	133	29	5	27	37	1.79
38735188--38735349	58	2.8	59	80	7	188	51	1	2	44	1.22
38735318--38735376	24	2.5	24	83	10	68	59	0	3	37	1.14
38740389--38740427	18	2.2	18	90	9	62	53	5	7	33	1.51
38742871--38742916	21	2.2	21	88	7	67	6	39	2	52	1.40
38742930--38742995	6	10.5	6	76	12	53	12	45	9	33	1.73
38742930--38742994	18	3.8	18	76	8	64	10	46	9	33	1.71
38744292--38744362	35	2.1	35	86	7	101	49	4	0	46	1.21
38752101--38752147	24	1.9	25	91	4	78	53	10	0	36	1.36
38753450--38753520	31	2.3	31	80	7	74	54	8	1	35	1.39
38755470--38755530	23	2.7	23	84	0	77	18	18	21	42	1.89
38755491--38755558	34	2.0	34	94	0	118	22	16	19	42	1.89
38755470--38755582	57	2.0	58	83	1	147	21	18	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38755525--38755584	24	2.5	24	81	2	77	25	18	16	40	1.91
38755596--38755636	19	2.2	19	90	0	64	75	9	0	14	1.04
38757065--38757100	2	18.5	2	94	5	65	50	0	0	50	1.00
38767318--38767350	14	2.5	13	86	13	50	39	0	0	60	0.97
38768226--38769119	76	11.7	76	90	3	1368	33	17	14	34	1.91
38768230--38769324	38	28.4	39	69	15	602	33	17	14	34	1.90
38769106--38769269	91	1.8	89	92	2	274	33	17	14	34	1.91
38769106--38769426	167	1.9	167	99	0	633	33	18	14	34	1.91
38769186--38769345	76	2.1	77	91	2	259	34	18	13	34	1.89
38769605--38769726	51	2.4	50	86	5	158	13	22	21	41	1.88
38769738--38769941	50	4.1	49	65	15	114	14	22	22	41	1.89
38769700--38769999	150	2.0	150	96	0	546	14	21	22	41	1.89
38774695--38774851	29	5.4	27	73	19	122	35	5	31	28	1.81
38774695--38774852	30	5.4	28	72	19	117	35	5	31	27	1.80
38774695--38774852	59	2.7	57	87	5	244	35	5	31	27	1.80
38774867--38774981	30	3.9	30	86	3	153	35	2	24	37	1.69
38774695--38774921	118	1.9	115	80	11	255	34	5	29	30	1.80
38776794--38776843	18	2.9	16	85	8	55	56	6	0	38	1.24
38776834--38776882	18	2.7	18	78	9	55	48	4	6	40	1.47
38776810--38776864	24	2.3	24	80	0	65	50	5	1	41	1.36
38779411--38779443	14	2.5	13	86	13	50	39	0	0	60	0.97
38784080--38784131	12	4.4	12	78	4	52	44	13	17	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38786941--38786979	13	2.9	13	84	3	51	23	5	2	69	1.21
38787756--38787796	18	2.3	18	95	4	75	9	17	19	53	1.70
38793395--38793447	6	8.8	6	93	0	88	50	0	32	16	1.46
38794862--38794928	24	2.9	23	95	4	109	61	14	4	19	1.50
38795024--38795082	6	9.8	6	98	0	109	35	0	64	0	0.94
38805024--38805059	18	2.0	18	94	0	63	25	0	5	69	1.10
38806114--38806214	49	2.1	49	94	0	175	27	16	22	32	1.96
38809974--38809998	5	5.0	5	100	0	50	20	0	0	80	0.72
38810825--38810876	26	2.0	26	96	0	95	44	19	17	19	1.87
38814442--38814483	21	2.0	21	100	0	84	38	19	14	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163