genome.fa.s8.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  76  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20056315--20056363	20	2.5	20	86	0	71	38	6	8	46	1.58
20058397--20058458	29	2.1	29	93	0	106	64	4	1	29	1.23
20063720--20063755	18	2.0	18	88	0	54	41	0	5	52	1.24
20066043--20066254	68	3.1	68	86	2	284	28	24	16	30	1.96
20068040--20068075	18	2.0	18	88	0	54	47	0	2	50	1.15
20073492--20073544	23	2.5	22	82	11	65	45	0	9	45	1.36
20073535--20073559	4	6.2	4	100	0	50	28	0	0	72	0.86
20073798--20073849	22	2.3	23	90	6	79	59	15	3	21	1.52
20074387--20074422	3	11.7	3	94	5	63	66	0	0	33	0.92
20095626--20095658	16	2.0	17	88	5	50	51	21	6	21	1.69
20097447--20097668	39	5.7	39	87	2	275	25	19	19	36	1.95
20099640--20099682	12	3.3	13	77	9	52	67	0	9	23	1.19
20103163--20103205	17	2.7	15	83	13	59	25	4	4	65	1.32
20103866--20103899	13	2.7	12	90	9	50	14	0	11	73	1.10
20108738--20108785	23	2.1	23	88	3	71	70	6	12	10	1.32
20112379--20112414	16	2.2	16	90	5	54	80	11	0	8	0.90
20113971--20114017	16	2.6	18	80	19	62	19	12	0	68	1.21
20118032--20118093	27	2.2	28	82	2	72	33	14	4	46	1.66
20119572--20119645	26	2.9	26	86	6	89	78	0	12	9	0.97
20119579--20119644	19	3.2	19	80	10	60	78	0	10	10	0.96
20119556--20119645	26	3.5	25	77	10	83	78	0	13	7	0.94
20119587--20119648	19	3.0	20	76	9	63	75	0	12	11	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20120719--20121121	45	8.9	45	90	0	581	30	27	18	23	1.98
20121544--20121588	17	2.6	17	82	3	54	77	2	0	20	0.87
20121625--20121653	7	4.3	7	95	4	51	58	27	0	13	1.36
20123049--20123087	20	1.9	21	89	5	62	7	7	2	82	0.94
20123393--20123596	108	1.9	109	85	5	288	29	13	18	38	1.89
20135149--20135197	24	2.0	24	92	0	80	20	28	20	30	1.98
20136059--20136094	12	3.0	12	91	0	54	19	27	25	27	1.99
20136087--20136154	19	3.5	20	82	9	70	19	19	20	41	1.91
20139549--20139581	16	2.1	16	88	5	50	27	6	15	51	1.66
20154426--20154469	21	2.1	21	100	0	88	47	9	4	38	1.56
20158252--20158282	16	1.9	16	93	0	53	25	6	22	45	1.76
20159454--20159486	17	2.0	17	88	5	50	42	0	0	57	0.98
20159447--20159578	62	2.2	59	85	8	178	42	2	2	53	1.26
20159521--20159552	12	2.6	13	85	14	50	43	0	0	56	0.99
20165761--20165785	13	1.9	13	100	0	50	44	0	8	48	1.32
20167456--20167597	74	1.9	74	95	0	257	38	16	11	33	1.84
20169373--20169476	52	2.0	52	98	0	199	23	24	15	37	1.93
20180988--20181034	20	2.3	21	78	10	53	36	6	29	27	1.82
20182167--20182200	11	3.2	11	87	4	52	61	0	0	38	0.96
20182205--20184060	719	2.6	714	87	3	2703	44	12	9	33	1.75
20184655--20184688	7	4.7	7	92	7	59	85	0	14	0	0.60
20184657--20184688	15	2.1	15	100	0	64	87	0	12	0	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20189490--20189530	21	2.0	21	85	9	57	63	2	26	7	1.33
20194367--20194393	14	1.9	14	100	0	54	74	0	0	25	0.83
20201143--20201201	26	2.4	25	80	8	68	55	0	0	44	0.99
20203209--20203287	26	3.5	22	72	14	70	43	30	11	15	1.82
20203209--20203315	48	2.2	48	83	3	126	42	28	12	17	1.85
20206876--20206935	28	2.2	26	82	11	68	18	21	16	43	1.88
20206905--20206999	33	2.9	33	78	9	104	16	22	16	44	1.87
20208437--20208500	32	2.0	32	100	0	128	31	9	25	34	1.87
20215449--20215554	50	2.1	50	82	3	124	26	26	16	31	1.96
20217937--20218278	30	11.5	30	84	5	338	37	23	2	36	1.68
20217954--20218278	59	5.5	59	82	6	345	37	23	2	37	1.68
20218242--20218342	29	3.5	29	81	6	107	37	25	2	33	1.71
20218292--20218370	29	2.8	29	88	1	106	41	29	0	29	1.56
20224921--20224950	3	10.0	3	100	0	60	66	0	33	0	0.92
20227485--20228042	39	14.4	39	68	13	274	23	29	20	27	1.99
20227515--20227660	38	3.8	38	70	9	100	22	28	21	27	1.99
20227485--20227743	115	2.2	117	84	3	344	22	27	21	28	1.99
20227601--20228036	78	5.6	77	81	3	451	22	29	20	27	1.99
20227601--20228036	156	2.8	155	83	2	507	22	29	20	27	1.99
20227619--20228130	78	6.6	77	79	5	320	23	29	20	25	1.99
20227951--20228130	39	4.6	39	75	9	154	24	32	19	23	1.98
20228452--20228673	113	2.0	113	90	1	356	38	20	19	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20230669--20230764	30	3.2	30	85	7	133	38	21	1	38	1.61
20230660--20230771	30	3.8	30	78	12	99	37	20	1	40	1.63
20230769--20230828	29	2.1	29	90	3	95	35	28	5	31	1.79
20230864--20230919	28	2.0	27	86	3	76	39	19	5	35	1.75
20236513--20236551	17	2.3	17	86	0	51	43	25	15	15	1.86
20249008--20249258	43	5.9	43	89	4	348	23	25	11	39	1.88
20250068--20250122	13	4.3	13	77	8	60	45	43	0	10	1.39
20250336--20250367	14	2.3	14	94	0	55	37	6	21	34	1.79
20250416--20250446	6	5.2	6	92	0	53	32	0	35	32	1.58
20250416--20250457	18	2.3	18	87	0	57	38	2	30	28	1.70
20260217--20260241	2	12.5	2	100	0	50	52	0	0	48	1.00
20266677--20266717	19	2.2	19	86	8	57	60	12	12	14	1.58
20274401--20274437	19	1.9	19	100	0	74	27	21	10	40	1.86
20278051--20278080	15	1.9	15	93	6	51	40	3	23	33	1.71
20298903--20299031	55	2.3	55	89	0	186	25	10	16	47	1.79
20299789--20299835	18	2.6	18	79	0	58	63	6	4	25	1.36
20300947--20301003	4	14.8	4	80	14	66	75	3	0	21	0.95
20300949--20301014	11	5.6	11	80	10	69	75	4	0	19	0.97
20300929--20301001	30	2.4	29	82	11	76	75	5	1	17	1.07
20300947--20301001	15	3.6	15	85	9	76	76	3	0	20	0.94
20300951--20301019	27	2.7	26	74	26	74	75	4	0	20	0.97
20301323--20301371	24	2.0	25	88	7	75	40	10	12	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20301947--20302537	45	12.9	45	85	2	644	25	14	27	32	1.95
20301947--20302544	182	3.3	180	82	4	691	24	14	27	32	1.94
20302529--20302684	50	3.1	50	69	7	136	26	18	19	34	1.95
20302528--20302774	101	2.5	101	87	3	331	25	20	19	34	1.96
20306136--20306199	32	2.0	32	96	0	119	23	26	12	37	1.90
20306789--20306838	14	3.4	15	78	13	50	20	0	2	78	0.86
20309301--20309447	73	2.0	73	100	0	294	32	18	20	28	1.96
20309589--20309629	20	2.0	21	85	4	57	17	26	17	39	1.91
20313676--20313842	83	2.0	83	100	0	334	33	23	16	26	1.95
20318402--20318449	18	2.7	18	96	3	89	50	29	10	10	1.70
20335464--20335555	20	4.6	20	73	9	71	46	13	7	32	1.71
20355752--20355805	20	2.7	20	82	0	54	46	11	9	33	1.71
20357994--20358079	20	4.3	20	73	8	68	48	12	6	31	1.68
20362466--20362511	17	2.7	17	79	0	56	45	15	19	19	1.85
20369536--20369589	21	2.5	22	79	8	67	27	29	18	24	1.98
20369559--20369599	21	2.0	21	85	0	55	31	29	12	26	1.92
20369643--20369676	18	1.9	17	88	5	50	50	26	5	17	1.69
20370274--20370382	19	5.8	19	82	2	139	25	22	17	33	1.96
20370686--20370743	26	2.2	26	93	0	98	27	18	5	48	1.70
20372315--20372364	20	2.5	20	81	15	50	44	0	14	42	1.44
20378757--20378810	26	2.1	26	92	0	90	53	9	1	35	1.44
20381801--20381833	17	2.0	17	88	5	50	54	6	0	39	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20390676--20390861	95	2.0	95	82	4	232	32	20	18	27	1.96
20390674--20390888	95	2.3	95	79	8	224	33	19	19	28	1.96
20394749--20394780	8	4.1	8	96	4	57	21	0	0	78	0.76
20396207--20396301	37	2.5	37	89	5	118	36	8	14	40	1.77
20396226--20396301	37	2.1	37	100	0	152	35	7	18	38	1.80
20396547--20396690	24	5.7	24	66	11	72	34	15	27	22	1.95
20396547--20396663	52	2.3	52	90	1	191	33	17	28	21	1.95
20397006--20397064	30	2.0	30	89	0	91	40	5	13	40	1.67
20397689--20397898	103	2.0	103	93	0	357	28	23	24	23	1.99
20405448--20405493	23	2.0	23	95	0	83	36	4	26	32	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163