genome.fa.s8.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  111  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31240036--31240089	3	18.0	3	100	0	108	66	0	33	0	0.92
31242805--31242893	25	3.6	25	76	3	90	30	17	21	30	1.96
31242830--31242905	24	3.1	24	77	3	71	32	17	21	28	1.95
31247450--31247502	18	2.9	18	77	0	61	16	15	28	39	1.89
31255227--31255253	7	3.9	7	100	0	54	14	0	0	85	0.61
31257393--31257447	27	2.0	27	86	6	76	49	14	16	20	1.80
31259229--31259261	14	2.4	14	94	0	57	0	15	0	84	0.61
31260948--31261306	196	1.8	195	83	3	479	26	23	18	31	1.98
31272094--31272294	107	1.9	109	90	4	327	39	16	11	31	1.85
31274632--31274793	80	2.0	80	100	0	324	24	27	1	46	1.60
31274641--31274768	42	3.1	42	61	24	101	21	27	1	49	1.59
31276345--31276632	96	3.0	96	85	3	373	31	19	15	32	1.93
31276361--31276632	32	8.5	32	85	1	305	31	19	16	32	1.94
31287362--31287693	32	10.4	32	84	4	386	33	18	16	31	1.93
31294397--31294430	2	17.0	2	93	0	59	50	2	0	47	1.16
31297301--31297379	30	2.7	29	75	11	79	50	2	15	31	1.57
31297436--31297476	19	2.2	19	86	4	57	70	0	4	24	1.06
31298777--31298812	18	1.9	19	88	5	56	11	2	30	55	1.49
31303366--31303398	17	1.9	17	88	11	50	39	6	0	54	1.25
31304200--31304241	19	2.3	18	87	4	57	33	9	4	52	1.55
31305905--31305949	19	2.4	19	81	7	56	37	0	4	57	1.19
31306742--31306784	22	2.0	22	86	9	61	20	6	0	72	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31308876--31309241	58	6.3	59	73	13	206	36	4	24	35	1.74
31308932--31309260	88	3.7	87	80	6	285	37	3	24	34	1.71
31308944--31309233	58	5.0	56	77	10	221	37	2	23	36	1.70
31309052--31309262	30	7.2	29	72	17	100	37	1	25	35	1.67
31308901--31309262	29	12.4	30	72	16	178	36	3	24	35	1.72
31310317--31310373	21	2.8	20	81	7	69	40	5	5	49	1.48
31311031--31311066	14	2.6	15	83	16	51	27	8	16	47	1.75
31311070--31311104	17	2.1	17	88	0	52	51	0	2	45	1.16
31318303--31318347	20	2.2	21	88	4	65	20	6	0	73	1.05
31321172--31321225	17	3.2	17	78	17	60	40	9	0	50	1.35
31321684--31321787	50	2.1	51	87	8	151	44	7	0	48	1.31
31324328--31324443	30	3.9	30	82	6	130	41	2	20	35	1.66
31325185--31325224	18	2.2	18	86	0	53	42	2	12	42	1.56
31326396--31326454	29	2.0	29	83	6	73	55	0	18	25	1.42
31332272--31332318	22	2.2	21	82	17	53	42	12	2	42	1.55
31332663--31332758	41	2.3	41	96	0	174	36	28	6	29	1.81
31335695--31335733	18	2.2	18	86	4	53	33	10	5	51	1.58
31335964--31335996	17	1.9	17	88	11	50	39	6	0	54	1.25
31339032--31339094	19	3.6	17	77	12	65	39	1	3	55	1.25
31339032--31339097	16	3.9	17	79	13	64	42	1	3	53	1.25
31339776--31339849	20	3.7	20	82	8	87	50	1	8	40	1.41
31339757--31339861	41	2.6	41	82	5	108	48	2	6	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31339817--31339873	30	1.9	29	89	10	89	49	1	3	45	1.29
31340965--31341202	30	8.1	30	84	8	294	36	26	3	34	1.74
31340965--31341233	58	4.6	59	82	7	300	35	26	3	33	1.74
31353709--31353784	6	13.0	6	69	15	52	39	2	2	55	1.28
31353709--31353784	17	4.4	17	80	11	82	39	2	2	55	1.28
31353709--31353784	11	6.5	12	71	15	52	39	2	2	55	1.28
31354458--31354543	21	4.2	21	77	4	86	48	2	5	43	1.39
31354477--31354550	20	3.7	19	77	12	76	51	1	6	40	1.37
31354458--31354562	41	2.6	41	83	5	117	49	2	5	41	1.41
31354518--31354575	30	1.9	30	86	13	84	50	1	3	44	1.29
31355663--31355888	29	7.8	29	79	7	219	34	28	3	32	1.76
31355657--31355888	87	2.7	85	82	8	254	33	29	4	32	1.77
31355991--31356211	28	7.8	28	69	17	82	32	26	6	34	1.83
31356019--31356151	58	2.3	57	83	5	151	34	23	3	39	1.70
31356135--31356207	28	2.6	28	100	0	146	30	27	10	31	1.91
31359139--31359177	17	2.3	17	86	8	53	41	7	0	51	1.31
31359625--31359728	50	2.1	51	87	8	151	43	8	0	48	1.34
31361764--31361813	23	2.2	22	79	6	55	40	14	2	44	1.56
31364249--31364296	14	3.3	15	85	5	64	45	6	0	47	1.27
31364256--31364303	17	2.8	17	78	12	53	43	8	0	47	1.33
31364343--31364381	21	1.9	20	84	5	51	33	2	0	64	1.08
31365498--31365538	21	2.0	21	85	9	57	39	9	4	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31366546--31366637	41	2.2	41	84	0	130	45	15	15	23	1.84
31366586--31366646	29	2.1	29	87	0	86	44	14	16	24	1.85
31367196--31367340	53	2.7	53	84	5	177	33	35	14	17	1.90
31367291--31367385	43	2.3	43	81	9	115	28	34	15	21	1.94
31367309--31367388	43	1.9	41	89	5	124	27	35	15	22	1.94
31369441--31369488	21	2.2	22	82	14	55	45	14	12	27	1.81
31370729--31370839	27	4.1	27	92	0	186	21	38	4	35	1.74
31370815--31371024	93	2.3	93	93	0	357	22	30	11	36	1.89
31372339--31372421	20	4.0	21	67	25	59	26	6	8	59	1.50
31373843--31373893	26	2.0	25	84	7	66	62	0	7	29	1.23
31376033--31376186	80	1.9	80	89	2	238	29	26	22	22	1.99
31376890--31376933	2	22.0	2	100	0	88	50	0	0	50	1.00
31379332--31379362	10	3.1	10	90	0	53	29	0	12	58	1.35
31379614--31379751	46	3.0	45	85	6	188	23	14	26	35	1.93
31379830--31379900	33	2.2	33	94	0	124	19	22	23	33	1.97
31379897--31380045	41	3.6	41	79	8	183	24	10	25	39	1.87
31380874--31380913	17	2.4	17	83	12	55	0	20	0	80	0.72
31381837--31381877	14	2.9	14	88	3	55	2	19	0	78	0.87
31382367--31382495	37	3.4	37	69	12	118	48	5	21	24	1.71
31382364--31382515	76	2.0	76	100	0	304	46	6	22	25	1.76
31386890--31386923	17	2.0	17	94	0	59	41	0	14	44	1.45
31390125--31390190	19	3.4	19	68	15	62	53	3	15	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31390108--31390187	40	2.0	40	97	0	151	51	5	15	28	1.64
31390111--31390176	19	3.2	22	66	24	61	51	6	13	28	1.65
31396660--31396771	48	2.3	48	98	0	215	21	15	18	44	1.86
31399438--31399462	11	2.3	11	100	0	50	84	0	0	16	0.63
31399713--31399787	26	2.9	24	79	18	80	37	0	2	60	1.11
31399714--31399784	8	8.4	8	72	14	54	38	0	2	59	1.12
31400305--31400370	33	2.0	33	87	0	96	39	16	25	18	1.91
31405009--31405070	19	3.2	18	76	17	54	70	4	0	24	1.06
31407128--31407309	100	1.8	100	97	0	346	56	10	6	26	1.56
31407136--31407291	46	3.1	49	66	21	117	53	11	6	28	1.61
31411507--31411570	22	3.0	21	77	13	67	37	0	4	57	1.19
31423406--31423497	40	2.3	40	88	0	139	25	10	22	41	1.86
31423389--31423526	40	3.5	40	84	1	134	23	13	23	39	1.89
31426951--31427058	27	4.1	27	80	2	121	22	12	26	38	1.89
31427080--31427129	26	1.9	26	88	8	75	26	24	18	32	1.97
31433796--31434076	27	10.7	27	82	5	328	25	15	22	36	1.93
31434041--31434098	25	2.3	26	85	8	75	25	13	24	36	1.92
31443135--31444130	495	2.0	498	95	1	1791	29	21	20	28	1.98
31464059--31464147	40	2.2	40	86	7	119	25	14	22	37	1.92
31466842--31466881	19	2.1	19	86	9	55	72	5	0	22	1.04
31470388--31470443	29	1.9	29	82	7	69	42	3	19	33	1.69
31470395--31470493	29	3.4	29	78	10	96	40	4	22	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31470479--31470519	21	2.0	21	90	4	66	29	9	29	31	1.89
31470544--31470614	30	2.4	30	83	6	83	39	0	23	36	1.55
31470598--31470624	14	1.9	14	100	0	54	37	0	29	33	1.58
31470569--31470657	44	2.0	44	87	6	128	39	2	23	34	1.67
31470612--31470737	31	4.2	30	87	6	166	40	1	21	36	1.63
31470612--31470737	61	2.1	60	85	5	166	40	1	21	36	1.63
31471451--31471481	3	10.3	3	100	0	62	32	0	0	67	0.91
31473001--31473168	85	2.0	85	88	6	252	25	21	16	36	1.94
31472678--31473603	210	4.4	209	84	2	1058	23	22	17	36	1.94
31472678--31473604	419	2.2	414	82	4	1119	23	22	17	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163