genome.fa.s8.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  91  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25824335--25824391	30	1.9	30	88	0	87	35	0	0	64	0.93
25824314--25824405	40	2.3	39	80	10	98	30	1	1	67	1.05
25824514--25824795	92	3.1	90	84	4	363	31	10	20	36	1.87
25837880--25837930	26	2.0	26	84	0	66	27	15	25	31	1.96
25838064--25838155	27	3.4	26	84	3	103	17	21	31	29	1.96
25838563--25838675	52	2.2	52	79	6	122	27	7	23	42	1.79
25839159--25839270	52	2.1	53	85	8	149	16	18	23	41	1.89
25846039--25846091	20	2.7	19	91	5	79	1	5	22	69	1.19
25848627--25848653	12	2.2	12	100	0	54	33	0	0	66	0.92
25862680--25862737	4	14.5	4	81	0	71	20	25	3	50	1.64
25870750--25870793	17	2.7	16	86	6	61	77	0	18	4	0.94
25870751--25870798	15	3.1	15	85	11	53	75	0	18	6	1.01
25871194--25871798	42	14.5	42	87	0	764	22	18	23	35	1.95
25872207--25872243	3	12.3	3	100	0	74	35	0	0	64	0.94
25872778--25872820	19	2.2	19	87	4	59	39	2	4	53	1.34
25872685--25872970	149	1.9	150	84	7	388	41	3	9	45	1.55
25872837--25873091	121	2.1	119	86	7	347	43	2	10	43	1.53
25874131--25874597	239	2.0	236	92	1	772	36	7	14	41	1.74
25878345--25878377	3	11.0	3	100	0	66	66	0	0	33	0.92
25883720--25883760	15	2.7	15	100	0	82	41	0	29	29	1.56
25884778--25884835	11	5.0	11	87	6	71	10	10	0	79	0.94
25884786--25884818	15	2.2	15	89	10	50	9	9	0	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25887965--25888114	60	2.5	59	81	9	153	40	18	3	38	1.67
25887965--25888114	30	5.0	30	77	2	124	40	18	3	38	1.67
25901764--25901974	70	3.1	70	80	7	234	22	22	22	33	1.98
25902136--25902392	108	2.4	106	79	5	255	30	24	14	29	1.95
25902761--25902836	31	2.5	30	82	8	82	42	3	6	47	1.48
25927779--25927821	18	2.3	18	84	4	50	20	4	2	72	1.14
25927791--25927840	18	2.7	18	78	12	57	22	2	4	72	1.12
25927793--25927840	17	2.7	18	80	9	53	22	2	4	70	1.15
25945087--25945125	18	2.2	19	86	9	55	58	2	2	35	1.25
25947083--25947347	29	9.1	26	67	21	93	32	31	2	33	1.70
25947082--25947348	59	4.6	59	83	5	330	32	32	2	32	1.70
25947082--25947346	117	2.3	117	85	4	347	32	31	2	33	1.70
25967696--25967755	30	2.0	31	86	3	86	41	0	40	18	1.50
25969294--25969322	3	9.7	3	100	0	58	68	0	0	31	0.89
25969321--25969361	3	13.7	3	94	0	73	65	31	2	0	1.05
25971896--25971936	21	1.9	22	85	5	57	26	12	14	46	1.80
25979259--25979283	13	1.9	13	100	0	50	48	0	16	36	1.46
25980120--25980189	30	2.3	30	90	2	104	32	30	4	32	1.77
25982010--25982196	51	3.6	51	86	7	229	28	24	15	32	1.95
25982335--25982370	8	4.3	9	89	10	51	25	0	0	75	0.81
25982345--25982370	4	6.5	4	100	0	52	23	0	0	76	0.78
25982370--25982411	16	2.6	16	81	7	50	71	2	2	23	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25995343--25996311	80	12.2	80	92	2	1447	32	22	18	25	1.97
25995346--25996311	159	6.1	160	91	2	1441	33	22	18	25	1.97
25995346--25996311	239	4.1	239	91	2	1464	33	22	18	25	1.97
25996816--25996841	13	2.0	13	100	0	52	15	0	0	84	0.62
25996845--25996886	16	2.6	16	81	7	50	71	2	2	23	1.10
26005556--26005694	51	2.7	51	90	0	215	29	24	13	32	1.94
26005547--26005734	51	3.8	47	83	4	171	30	23	14	31	1.94
26011924--26012115	51	3.8	51	92	0	312	31	22	13	33	1.92
26018404--26018455	21	2.5	21	78	12	70	34	26	13	25	1.93
26019137--26019320	51	3.6	51	93	0	287	30	23	13	32	1.93
26023015--26023080	34	1.9	34	84	6	89	19	19	13	46	1.83
26023023--26023080	17	3.4	17	75	0	53	20	17	13	48	1.81
26026438--26026855	33	12.8	32	73	9	308	27	45	2	24	1.67
26026486--26026847	66	5.5	66	87	4	473	27	44	2	24	1.66
26026467--26026843	99	3.8	98	78	5	361	27	44	2	24	1.67
26026438--26026845	131	3.1	132	84	4	504	26	45	2	24	1.68
26030149--26030219	20	3.6	20	86	5	83	50	11	5	32	1.61
26031568--26031920	176	2.0	176	98	0	679	29	13	14	43	1.83
26034463--26034561	26	3.6	26	69	12	81	51	4	2	42	1.32
26034529--26034605	39	2.0	38	82	7	93	51	3	1	42	1.28
26045622--26045668	23	2.0	23	100	0	94	42	17	8	31	1.79
26046002--26046041	18	2.3	18	86	4	55	55	7	15	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26046332--26046610	145	1.9	145	99	0	549	17	29	19	32	1.95
26055208--26055306	37	2.7	37	81	9	121	27	30	18	24	1.98
26055413--26055462	26	1.9	26	91	0	82	30	22	22	26	1.99
26059693--26059844	76	2.0	76	98	0	295	38	23	12	25	1.90
26059942--26060038	38	2.6	37	77	8	106	30	25	14	28	1.95
26060029--26060082	26	2.1	26	89	0	81	29	22	22	25	1.99
26060845--26060875	16	1.9	16	93	0	53	22	16	0	61	1.34
26062036--26062085	15	3.1	16	83	11	59	34	2	2	62	1.18
26079483--26079584	46	2.2	46	85	0	132	39	21	9	29	1.85
26079470--26079693	109	2.1	105	85	5	288	41	18	8	30	1.81
26087012--26087603	45	12.9	46	83	3	624	34	26	13	26	1.93
26087012--26087603	90	6.4	92	84	4	705	34	26	13	26	1.93
26090643--26090684	15	2.7	15	79	17	50	16	2	9	71	1.23
26090967--26091019	22	2.4	22	87	0	70	15	9	43	32	1.78
26091629--26092163	93	5.7	93	85	3	626	18	25	17	38	1.93
26091616--26092163	49	11.6	49	65	12	232	18	25	18	37	1.93
26091770--26092095	44	7.1	44	66	13	190	16	25	19	38	1.93
26091629--26092163	186	2.8	185	86	3	696	18	25	17	38	1.93
26104836--26104882	24	1.9	25	91	4	78	36	27	2	34	1.69
26105282--26105323	15	2.7	15	79	17	50	16	2	9	71	1.23
26105608--26105661	22	2.4	23	81	9	67	20	14	38	25	1.91
26109828--26109914	23	3.8	23	86	7	106	40	19	12	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26109851--26109924	12	6.3	12	71	12	55	40	21	14	22	1.90
26110012--26110046	12	2.9	12	91	0	52	51	17	17	14	1.77
26110441--26111936	744	2.0	745	97	0	2800	36	11	13	38	1.82
26112712--26112831	30	3.9	29	75	13	98	6	5	19	68	1.33
26112708--26112829	32	3.8	34	71	20	93	6	5	19	68	1.33
26112968--26113031	20	3.2	20	78	8	67	23	0	9	67	1.20
26115062--26115135	30	2.5	30	95	0	130	25	45	6	21	1.76
26115294--26115326	16	2.1	16	88	11	50	54	15	12	18	1.71
26116139--26116190	24	2.2	22	78	18	52	61	1	7	28	1.34
26118715--26118752	19	2.0	19	85	10	51	47	13	0	39	1.42
26119126--26119227	29	3.4	29	90	2	159	50	1	0	47	1.19
26120134--26120198	11	6.2	11	71	10	55	44	1	0	53	1.09
26120131--26120193	20	3.0	22	79	9	78	49	0	0	50	1.00
26120131--26120193	21	3.0	20	79	9	72	49	0	0	50	1.00
26120141--26120198	21	2.8	21	81	2	73	44	1	0	53	1.10
26124507--26124531	13	1.9	13	100	0	50	40	32	8	20	1.81
26127925--26128003	40	2.0	41	84	2	106	45	3	11	39	1.58
26128582--26128624	22	2.0	22	90	0	68	16	32	11	39	1.84
26135631--26135716	31	2.9	30	86	8	113	38	2	11	47	1.53
26139214--26139329	31	3.9	31	73	17	118	45	10	18	25	1.81
26139163--26139329	89	1.9	89	81	5	203	45	11	16	26	1.82
26142005--26142085	42	1.9	42	84	0	108	34	19	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26143292--26143433	51	2.8	51	86	0	194	35	14	23	26	1.93
26143416--26143447	15	2.1	15	100	0	64	34	6	25	34	1.81
26149942--26150082	51	2.8	51	83	4	160	38	14	21	26	1.91
26153525--26153615	26	3.4	25	77	16	101	48	0	3	48	1.18
26153548--26153621	8	9.2	8	71	11	53	54	0	1	44	1.08
26153548--26153652	34	3.2	33	80	12	94	49	2	4	42	1.38
26154478--26154502	13	1.9	13	100	0	50	32	24	4	40	1.73
26157566--26157619	8	7.0	8	91	4	76	48	25	0	25	1.52
26157560--26157616	30	1.9	30	100	0	114	47	28	0	24	1.52
26157566--26157632	16	4.3	16	79	7	57	46	29	1	22	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163