genome.fa.s8.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  113  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31651702--31651746	17	2.6	18	86	10	58	42	6	17	33	1.76
31652993--31653029	13	2.8	13	91	0	56	13	29	2	54	1.53
31663456--31663498	18	2.4	18	80	3	52	20	4	13	60	1.51
31663876--31663926	23	2.2	23	85	0	66	9	25	11	52	1.68
31666587--31666679	27	3.4	26	85	7	105	32	27	12	26	1.93
31671937--31671984	23	2.1	23	84	7	62	60	4	0	35	1.16
31673225--31673275	24	2.1	24	88	0	75	21	9	11	56	1.63
31673233--31673287	24	2.3	24	83	0	65	25	12	12	49	1.76
31675201--31675263	24	2.6	24	84	0	81	25	14	11	49	1.76
31681476--31681604	34	3.4	38	78	9	104	25	19	17	37	1.93
31681474--31681702	39	6.0	39	78	10	184	25	18	17	37	1.93
31687595--31687689	39	2.4	39	85	0	118	29	18	14	36	1.91
31689573--31689604	16	2.1	16	88	11	50	31	9	18	40	1.83
31692455--31692488	14	2.4	14	90	0	50	55	0	2	41	1.15
31693678--31693708	3	10.3	3	100	0	62	67	0	0	32	0.91
31694119--31694146	2	14.0	2	100	0	56	50	0	0	50	1.00
31710517--31710573	30	1.9	30	85	7	80	28	12	3	56	1.52
31710874--31710905	5	6.8	5	96	3	50	0	12	0	87	0.54
31725609--31725655	17	2.6	18	83	6	51	38	0	4	57	1.18
31726370--31726433	17	3.6	19	67	12	55	54	1	0	43	1.09
31726359--31726433	17	4.3	17	67	12	53	57	1	0	41	1.07
31728947--31728987	16	2.6	16	75	24	50	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31728915--31729089	80	2.1	82	80	9	189	46	1	1	50	1.18
31731240--31731310	31	2.3	31	86	11	94	45	21	12	21	1.84
31731862--31731931	31	2.3	30	83	11	81	22	14	21	41	1.89
31734015--31734067	5	10.4	5	85	4	52	0	35	0	64	0.94
31740813--31740857	23	2.0	23	86	8	65	28	2	13	55	1.50
31742157--31742199	21	2.0	21	90	0	68	60	0	39	0	0.97
31742158--31742198	15	2.7	16	85	7	50	63	0	36	0	0.95
31742158--31742198	12	3.4	13	80	12	52	63	0	36	0	0.95
31746055--31746144	45	2.0	45	97	0	171	47	7	8	35	1.64
31750569--31750654	42	2.0	42	90	0	136	19	25	20	33	1.97
31750572--31750666	42	2.3	42	84	0	109	21	24	21	33	1.97
31758732--31758774	18	2.4	18	80	0	50	23	44	20	11	1.84
31759453--31759524	33	2.1	35	87	5	103	47	22	6	23	1.75
31759941--31760085	70	2.1	70	96	0	263	46	4	23	24	1.71
31760921--31760962	15	2.6	17	81	14	61	54	2	0	42	1.13
31761550--31761607	24	2.4	24	79	0	62	53	8	3	34	1.49
31761566--31761612	24	2.0	24	82	0	58	55	6	4	34	1.45
31764952--31764999	24	2.0	24	100	0	96	25	25	25	25	2.00
31767163--31767218	24	2.3	24	90	0	85	48	8	5	37	1.58
31774662--31774712	25	2.0	25	84	0	66	72	1	19	5	1.15
31775765--31775810	25	1.9	25	86	8	69	39	4	2	54	1.32
31779744--31779812	35	2.0	35	88	0	102	28	11	15	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31782429--31783080	326	2.0	326	99	0	1277	26	13	19	40	1.89
31784349--31784378	8	3.8	8	95	0	51	73	0	0	26	0.84
31789575--31789599	2	12.5	2	100	0	50	0	52	0	48	1.00
31797075--31797212	69	2.0	69	86	0	195	31	22	13	31	1.93
31810112--31810208	45	2.1	45	82	1	113	46	12	16	24	1.81
31822307--31822444	51	2.7	51	89	2	197	31	13	23	30	1.94
31823826--31823889	30	2.1	31	85	8	87	65	3	10	20	1.37
31823933--31823984	26	2.0	26	88	0	77	55	0	9	34	1.32
31824100--31824145	24	1.9	24	82	8	58	67	0	6	26	1.15
31825474--31825503	3	10.0	3	92	0	51	33	3	0	63	1.11
31825584--31825989	75	5.4	75	85	1	501	19	20	21	38	1.94
31825701--31825984	40	7.5	40	64	19	133	19	19	21	40	1.92
31826370--31826415	3	15.7	3	95	4	85	0	30	0	69	0.89
31829277--31829308	15	2.2	14	94	5	55	43	21	6	28	1.77
31832634--31832678	21	2.1	21	87	0	63	48	2	46	2	1.26
31837553--31837737	20	9.2	20	80	0	127	11	28	21	38	1.89
31837553--31837737	40	4.6	40	75	2	165	11	28	21	38	1.89
31837553--31837737	60	3.1	59	80	3	217	11	28	21	38	1.89
31845599--31845647	3	17.3	3	87	12	77	65	0	34	0	0.93
31846478--31846515	20	1.9	20	94	0	67	65	5	0	28	1.14
31846872--31846925	27	2.0	26	89	3	81	61	7	7	24	1.49
31859824--31859868	24	1.9	23	90	4	72	57	6	8	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31859825--31859878	24	2.3	24	83	3	65	51	7	12	27	1.66
31875497--31875526	15	2.0	15	93	0	51	50	3	6	40	1.45
31877546--31877584	15	2.4	17	91	8	64	56	0	5	38	1.22
31881280--31881311	2	16.0	2	100	0	64	50	0	0	50	1.00
31885152--31885184	11	2.8	12	86	13	50	48	0	3	48	1.17
31886847--31886892	14	3.2	15	78	9	51	19	6	0	73	1.04
31886847--31886879	15	2.3	15	89	5	50	24	3	0	72	0.98
31888126--31888174	25	2.0	24	88	4	71	57	6	0	36	1.24
31890378--31890422	22	2.0	22	91	0	72	37	6	11	44	1.66
31891401--31891674	143	1.9	143	97	0	521	32	19	16	31	1.94
31894179--31894216	7	5.9	7	82	17	55	57	0	0	42	0.98
31894163--31894227	25	2.5	25	79	16	71	63	0	0	36	0.95
31894189--31894233	20	2.4	18	85	7	54	64	0	0	35	0.94
31894837--31894868	3	10.7	3	100	0	64	34	0	0	65	0.93
31895508--31895548	3	13.7	3	100	0	82	34	0	0	65	0.93
31896347--31896421	21	3.5	20	66	24	53	48	14	8	29	1.72
31896495--31896603	22	5.0	22	73	5	87	44	13	25	15	1.83
31897705--31897744	20	2.0	21	90	5	64	30	7	7	55	1.56
31910856--31910890	16	2.1	17	94	5	63	60	0	2	37	1.12
31914110--31914148	6	6.2	6	94	5	60	15	5	0	79	0.90
31922474--31922500	14	1.9	14	100	0	54	48	22	29	0	1.51
31926613--31926902	80	3.6	80	85	3	404	22	20	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31926613--31926906	160	1.8	160	88	1	455	22	20	24	32	1.97
31930612--31930744	58	2.3	60	84	6	175	35	3	23	37	1.73
31930639--31930832	29	6.8	28	75	16	148	35	2	24	38	1.67
31930641--31930762	58	2.1	57	86	7	167	35	2	26	36	1.70
31930672--31930833	87	1.9	87	85	7	231	36	1	21	40	1.64
31930807--31930854	21	2.3	20	85	7	60	29	2	25	43	1.66
31930838--31930940	29	3.5	29	82	2	125	38	3	20	36	1.71
31930834--31930920	29	2.9	30	84	3	131	37	4	21	35	1.74
31930834--31930949	59	2.0	60	89	1	180	37	4	21	37	1.73
31932949--31932985	17	2.2	17	90	0	56	51	0	2	45	1.15
31933349--31934753	206	6.9	206	85	2	1752	23	22	18	35	1.96
31933349--31934753	406	3.5	405	84	3	1717	23	22	18	35	1.96
31933362--31934753	612	2.3	605	86	1	1926	23	22	18	35	1.96
31934421--31934795	194	1.9	194	92	1	626	24	21	17	36	1.95
31934713--31934855	60	2.4	60	93	0	250	21	16	24	37	1.94
31935049--31935780	92	7.9	92	88	4	1015	31	17	16	33	1.93
31935318--31935768	52	9.4	51	62	22	172	31	17	16	33	1.93
31935082--31935780	287	2.5	282	88	5	1023	31	17	16	33	1.93
31935049--31935791	379	2.0	375	90	2	1175	31	17	16	34	1.93
31935893--31935997	49	2.1	49	82	3	122	16	29	16	38	1.90
31935914--31936156	49	5.0	49	76	4	190	13	26	21	37	1.91
31935914--31936156	97	2.5	97	81	6	278	13	26	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31937353--31937387	12	2.9	12	84	16	54	0	17	0	82	0.66
31942943--31943133	57	3.3	58	80	9	160	37	4	25	32	1.77
31943036--31943268	29	7.8	28	76	14	189	34	1	24	39	1.64
31943129--31943272	57	2.5	59	85	6	188	32	0	25	41	1.60
31944456--31944489	12	2.7	13	86	9	52	35	2	0	61	1.11
31945263--31945333	17	4.2	17	72	0	61	53	5	4	36	1.44
31946185--31946256	31	2.4	31	83	6	94	44	18	5	31	1.72
31950407--31950450	16	2.8	16	82	0	52	29	2	0	68	1.02
31952281--31952364	42	2.0	42	90	4	134	47	22	0	29	1.52
31952643--31952783	72	2.0	72	82	8	173	19	7	11	61	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163