genome.fa.s8.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  25  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6714787--6714868	17	5.0	17	76	22	70	60	1	0	37	1.04
6719702--6719742	2	20.5	2	84	0	55	53	4	0	41	1.22
6719702--6719743	14	3.0	14	96	0	75	52	7	0	40	1.29
6737001--6737168	23	7.4	23	74	12	109	42	19	23	14	1.88
6737046--6737168	23	5.2	23	83	7	124	40	19	24	15	1.90
6737066--6737160	48	1.9	48	85	12	131	42	17	23	16	1.89
6739780--6739821	17	2.4	17	88	4	57	47	4	28	19	1.69
6744109--6744163	28	2.0	28	92	0	92	30	16	29	23	1.96
6744889--6744933	21	2.1	21	84	8	56	28	13	26	31	1.94
6751466--6751507	16	2.5	16	82	17	50	26	0	2	71	0.98
6752589--6752636	18	2.8	17	84	12	62	81	4	8	6	0.98
6771043--6771070	6	4.7	6	100	0	56	0	82	0	17	0.68
6771043--6771077	18	1.9	18	88	0	52	5	77	0	17	0.96
6775167--6775196	7	4.3	7	100	0	60	13	0	13	73	1.10
6775236--6775261	11	2.4	11	100	0	52	34	0	26	38	1.57
6785053--6785235	91	2.0	91	100	0	366	34	4	3	57	1.35
6785484--6785541	31	1.9	30	85	3	80	46	3	5	44	1.42
6810421--6811115	344	2.0	345	96	0	1266	35	16	15	32	1.90
6822614--6822808	99	2.0	99	100	0	390	21	13	20	44	1.85
6823663--6823720	18	2.9	20	80	15	75	29	18	1	50	1.57
6827792--6827864	23	3.0	25	76	11	80	52	2	4	41	1.35
6849358--6849402	21	2.0	24	87	12	69	60	2	0	37	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6853659--6853933	59	4.6	59	77	8	236	28	16	15	39	1.89
6853668--6853933	120	2.2	120	82	7	303	28	16	16	39	1.90
6856363--6856420	24	2.4	24	100	0	116	34	8	17	39	1.80
6858332--6858390	9	6.2	9	75	16	57	23	1	0	74	0.91
6858506--6858547	19	2.2	20	91	4	68	21	7	2	69	1.25
6858577--6858633	21	2.7	21	69	0	60	42	8	1	47	1.45
6859713--6859780	30	2.3	30	87	5	93	29	7	1	61	1.32
6860583--6860893	60	5.2	58	74	12	222	40	16	15	27	1.89
6860586--6860811	120	1.9	120	79	5	260	38	17	17	26	1.92
6862055--6862098	14	3.2	13	78	9	52	36	4	0	59	1.18
6867600--6867718	52	2.3	52	86	0	175	25	15	25	34	1.94
6868994--6869240	43	5.8	43	83	2	309	24	25	19	30	1.98
6868994--6869240	129	1.9	128	86	4	354	24	25	19	30	1.98
6876859--6876906	19	2.5	20	79	3	53	75	6	4	14	1.16
6877242--6877300	23	2.6	23	83	0	73	45	20	25	8	1.79
6877262--6877313	23	2.2	23	82	3	59	57	15	17	9	1.64
6879604--6879696	42	2.2	42	84	0	132	22	11	32	33	1.90
6882557--6882615	24	2.4	24	91	5	91	30	18	0	50	1.47
6883233--6883279	18	2.6	18	89	0	67	29	10	10	48	1.71
6885461--6885587	65	1.9	67	82	3	159	35	8	5	50	1.56
6887050--6887159	35	3.0	35	80	14	123	22	47	6	23	1.74
6903031--6903076	23	2.1	23	84	8	60	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6905290--6905515	41	5.5	41	81	1	265	21	44	12	21	1.85
6907779--6907824	15	3.1	15	87	3	58	21	6	0	71	1.08
6907801--6907969	64	2.5	67	84	12	195	21	7	7	64	1.43
6907862--6908014	73	2.1	74	83	10	199	24	5	5	64	1.36
6908324--6908356	17	1.9	17	88	11	50	24	0	6	69	1.10
6909534--6909577	21	2.1	21	83	8	54	38	0	0	61	0.96
6909831--6909867	13	2.8	14	88	8	51	59	2	0	37	1.12
6917225--6917255	2	15.5	2	100	0	62	48	0	51	0	1.00
6928043--6928071	3	9.7	3	100	0	58	65	0	34	0	0.93
6935663--6936319	200	3.3	198	89	3	940	35	20	23	21	1.96
6936208--6936405	86	2.3	87	88	0	290	34	19	24	21	1.96
6937212--6937294	26	3.3	24	80	9	85	44	25	7	22	1.78
6937587--6937638	21	2.5	20	81	9	68	50	3	5	40	1.45
6938614--6938694	30	2.7	31	76	17	91	37	28	2	32	1.70
6938602--6938927	59	5.6	58	77	14	275	35	27	1	35	1.67
6938614--6938927	118	2.7	117	81	11	367	35	27	1	35	1.67
6938762--6938903	29	4.8	30	73	17	111	37	27	2	33	1.69
6940489--6940591	34	3.0	34	82	1	125	49	1	31	17	1.58
6940492--6940594	17	6.2	17	68	14	54	46	1	32	19	1.61
6942894--6942927	16	2.1	17	88	5	52	20	17	2	58	1.51
6945987--6946089	34	3.0	34	84	1	125	50	1	29	18	1.58
6946020--6946079	16	3.6	16	70	18	50	46	1	31	20	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6946704--6946733	14	2.1	14	100	0	60	36	6	36	20	1.79
6951799--6951871	31	2.4	31	83	0	92	49	12	17	20	1.79
6959515--6959717	9	21.2	9	67	19	74	62	1	4	30	1.27
6959515--6959717	19	10.6	19	71	12	94	62	1	4	30	1.27
6959534--6959579	20	2.3	20	85	7	58	58	0	0	41	0.98
6959635--6959691	29	2.0	29	82	6	71	63	3	5	28	1.33
6959833--6959857	7	3.6	7	100	0	50	32	0	24	44	1.54
6959885--6959926	9	4.6	9	85	5	57	30	0	2	66	1.04
6959885--6960009	28	4.3	28	70	21	96	34	1	2	61	1.18
6959874--6960009	19	6.9	19	67	16	64	33	1	2	62	1.16
6959874--6959939	10	6.5	10	72	10	53	31	1	1	65	1.11
6961087--6961206	59	2.0	59	95	0	213	20	22	16	40	1.91
6966827--6966892	30	2.2	29	84	10	89	57	0	1	40	1.08
6970243--6970279	17	2.2	17	100	0	74	27	27	27	18	1.98
6974218--6974272	20	2.8	20	82	0	83	29	9	10	50	1.68
6980382--6980432	25	2.0	26	84	3	68	56	0	7	35	1.28
6987369--6987478	55	2.0	55	92	0	184	23	17	20	38	1.93
6992663--6992715	3	17.7	3	84	0	70	60	0	1	37	1.08
6994158--6994207	17	2.8	17	82	8	55	56	4	4	36	1.37
6995323--6995375	20	2.7	20	82	5	54	28	7	30	33	1.85
6998144--6998182	20	2.0	20	84	0	51	33	7	28	30	1.85
7008877--7008913	7	5.4	7	90	9	51	29	2	21	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7010532--7010565	17	2.0	17	100	0	68	35	5	0	58	1.22
7011256--7011291	18	2.0	18	94	0	63	30	22	19	27	1.98
7011381--7011445	21	3.0	21	73	15	60	50	0	0	49	1.00
7012785--7012825	21	2.0	21	90	0	64	58	2	31	7	1.38
7015970--7016504	93	5.8	93	94	0	883	32	15	26	26	1.95
7025012--7025057	25	1.9	25	86	8	69	32	4	6	56	1.45
7027023--7027047	2	12.5	2	100	0	50	52	0	0	48	1.00
7043367--7043416	10	5.6	9	79	15	59	32	0	0	68	0.90
7043549--7043643	29	3.3	30	81	16	105	40	1	2	56	1.18
7043577--7043631	18	2.9	18	74	15	58	41	0	1	56	1.10
7043549--7043643	27	3.3	29	83	14	101	40	1	2	56	1.18
7043577--7043643	18	3.7	18	75	14	57	40	0	2	56	1.14
7043774--7043823	9	5.4	9	79	11	57	32	2	0	66	1.03
7043773--7043849	27	2.8	29	86	5	97	38	2	0	58	1.12
7047828--7047948	23	5.2	23	81	11	147	10	24	23	41	1.86
7047828--7047948	48	2.6	46	84	7	163	10	24	23	41	1.86
7047913--7047987	39	1.9	39	91	0	123	10	24	21	44	1.84
7051766--7051805	20	2.1	19	85	4	53	45	0	0	55	0.99
7052833--7052879	21	2.3	20	85	3	67	46	0	4	48	1.21
7052837--7052879	20	2.2	19	87	4	59	46	0	4	48	1.22
7053299--7053384	21	4.2	20	66	19	61	48	1	1	48	1.16
7053292--7053410	61	2.0	59	91	3	193	48	0	1	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7061090--7061193	37	2.7	38	76	5	93	31	26	19	22	1.97
7062048--7062088	3	14.3	3	80	10	50	63	2	0	34	1.08
7062052--7062088	14	2.6	14	86	0	56	64	2	0	32	1.07
7062067--7062124	13	4.6	13	77	14	59	48	1	0	50	1.11
7062067--7062124	26	2.3	25	82	5	73	48	1	0	50	1.11
7066391--7066417	2	13.5	2	100	0	54	51	0	0	48	1.00
7072652--7072705	26	2.0	28	85	7	76	31	0	3	64	1.11
7072630--7072734	34	3.0	33	77	16	81	31	2	1	63	1.19
7072641--7072743	9	11.8	9	67	22	60	32	1	1	64	1.16
7072639--7072741	26	3.9	26	67	19	70	32	1	1	64	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163