genome.fa.s8.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  104  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29660422--29660773	147	2.5	139	78	13	326	41	3	9	44	1.55
29661784--29662257	240	2.0	239	90	1	754	36	7	14	41	1.73
29668176--29668232	21	2.7	21	81	5	62	31	26	15	26	1.96
29671870--29671914	18	2.5	18	88	0	63	33	24	22	20	1.97
29676902--29676996	50	1.9	50	93	0	163	29	7	9	53	1.60
29681190--29681230	15	2.9	15	75	24	52	39	7	17	36	1.77
29693587--29693652	34	1.9	34	84	9	89	39	10	24	25	1.87
29694649--29694677	12	2.3	13	94	5	51	79	0	10	10	0.94
29695589--29695641	22	2.4	22	87	0	70	20	3	3	71	1.17
29700537--29700742	37	5.6	37	81	2	207	17	21	31	29	1.96
29700537--29700756	74	3.0	74	80	0	251	17	21	30	30	1.96
29703692--29703716	12	2.1	12	100	0	50	44	8	24	24	1.80
29706754--29706802	21	2.2	22	78	14	55	0	34	0	65	0.93
29714519--29714564	21	2.2	21	84	7	58	30	23	13	32	1.93
29719465--29719534	21	3.3	21	88	4	97	30	27	14	28	1.95
29720361--29720718	201	1.8	191	80	7	430	26	25	18	29	1.98
29743025--29743056	15	2.1	15	100	0	64	28	21	12	37	1.90
29744574--29744777	37	5.6	37	81	2	196	17	23	30	28	1.97
29744574--29744745	72	2.4	72	84	2	209	16	22	30	30	1.96
29745327--29745388	17	3.8	17	76	6	65	38	0	6	54	1.26
29745348--29745408	27	2.3	27	85	0	77	42	1	3	52	1.27
29747233--29747437	29	7.0	29	80	7	198	33	28	4	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29747233--29747437	58	3.5	58	82	6	234	33	28	4	33	1.78
29747273--29747437	87	1.9	88	86	6	237	33	27	4	34	1.77
29752580--29752628	21	2.2	22	78	14	55	0	34	0	65	0.93
29761248--29761299	21	2.5	22	78	15	65	28	25	15	30	1.96
29768413--29768454	17	2.4	18	84	8	59	19	14	9	57	1.64
29777746--29778362	100	6.2	99	82	4	650	37	19	18	24	1.94
29777731--29778278	50	11.0	49	70	9	245	36	19	19	24	1.95
29777731--29778362	299	2.1	299	81	4	713	37	19	19	24	1.94
29778767--29778812	13	3.5	13	90	0	56	17	0	6	76	1.00
29778759--29778813	22	2.5	22	85	8	69	18	0	5	76	0.97
29778785--29778818	17	1.9	18	94	5	61	17	2	2	76	1.04
29778949--29779006	29	2.0	30	86	3	82	29	20	1	48	1.60
29787677--29787725	25	2.0	25	84	8	64	71	6	8	14	1.29
29793538--29793615	39	2.0	39	92	0	129	32	5	11	51	1.60
29799412--29799504	30	3.1	29	71	9	71	39	5	18	36	1.73
29799387--29799504	60	2.0	60	86	3	166	37	5	21	35	1.78
29802211--29802242	16	2.0	16	93	0	55	53	3	0	43	1.16
29802907--29802987	29	2.7	30	86	5	110	48	14	6	30	1.69
29803453--29803507	22	2.6	21	78	16	67	49	9	18	23	1.76
29807183--29807237	22	2.6	21	88	5	92	49	10	20	20	1.78
29807798--29808046	76	3.3	76	86	2	331	38	8	12	40	1.73
29809277--29809322	21	2.2	20	84	3	65	43	34	0	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29809529--29809562	18	1.9	18	88	5	52	50	0	0	50	1.00
29809647--29809814	58	2.8	60	87	2	250	31	9	10	48	1.70
29820776--29820815	13	3.1	13	85	0	53	50	0	10	40	1.36
29820782--29820827	13	3.7	12	82	8	56	45	2	10	41	1.51
29825391--29825423	15	2.2	15	100	0	66	45	24	12	18	1.83
29830865--29831375	50	10.2	50	82	2	573	25	17	17	39	1.91
29830857--29831375	249	2.1	250	84	4	681	25	16	17	39	1.91
29840349--29840431	38	2.2	38	82	4	105	27	15	22	33	1.95
29841207--29841240	17	2.0	17	88	0	50	52	11	17	17	1.73
29844307--29845266	50	19.0	50	69	13	470	35	19	19	24	1.95
29844344--29844772	200	2.1	200	89	0	642	37	19	17	24	1.93
29844344--29844831	100	4.9	100	84	5	551	37	19	18	24	1.94
29844772--29844890	59	2.0	59	93	3	204	31	17	25	26	1.97
29844677--29844974	159	1.9	159	94	0	533	34	20	21	24	1.97
29844831--29845314	100	4.9	99	88	1	612	34	19	20	24	1.96
29844480--29845189	359	2.0	357	88	4	1063	35	20	20	24	1.96
29844580--29845090	259	2.0	259	90	1	819	35	19	21	23	1.96
29844831--29845314	199	2.4	200	87	2	670	34	19	20	24	1.96
29845760--29845810	4	12.2	4	80	12	50	21	0	3	74	0.98
29845776--29845816	9	4.4	9	87	12	57	21	2	0	75	0.92
29845883--29845929	18	2.6	17	81	15	51	14	2	6	76	1.08
29845896--29845929	17	1.9	18	88	5	52	14	0	5	79	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29845950--29846007	29	2.0	30	89	3	91	27	18	0	53	1.45
29847105--29847295	94	2.0	95	98	1	375	21	28	17	31	1.97
29848074--29848396	108	3.0	108	88	1	450	31	12	15	40	1.84
29861949--29862004	23	2.5	22	85	5	76	30	21	23	25	1.99
29864044--29864085	19	2.2	19	87	8	59	80	2	2	14	0.90
29864045--29864087	13	3.5	13	84	12	54	79	2	2	16	0.95
29864244--29864281	11	3.5	11	82	7	51	71	5	0	23	1.07
29864309--29864369	30	2.0	31	84	9	81	67	0	11	21	1.22
29866266--29866447	95	1.9	96	80	7	210	29	18	17	35	1.93
29866433--29866991	50	11.2	50	82	5	587	24	17	17	40	1.91
29866460--29866940	247	1.9	249	86	3	684	24	16	17	41	1.90
29866433--29866990	297	1.9	299	84	3	759	24	17	17	40	1.91
29869722--29870071	120	3.0	120	86	1	492	29	16	25	28	1.97
29876533--29876598	26	2.5	26	80	4	71	27	16	22	33	1.96
29880820--29881737	100	9.2	99	82	4	972	38	19	18	23	1.93
29880956--29881705	50	15.0	49	65	16	192	37	20	18	23	1.94
29880820--29881737	200	4.6	200	85	3	1073	38	19	18	23	1.93
29880820--29881737	300	3.1	299	84	3	1139	38	19	18	23	1.93
29882181--29882234	22	2.5	20	82	11	63	18	1	5	74	1.11
29882183--29882237	4	13.0	4	77	11	56	20	1	5	72	1.13
29882195--29882243	17	2.8	17	87	6	71	20	4	2	73	1.10
29882373--29882429	29	1.9	30	85	3	80	28	21	0	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29882498--29882557	26	2.3	27	80	11	72	58	21	1	18	1.48
29884389--29884708	108	2.9	107	87	2	444	32	12	15	40	1.84
29885376--29885434	19	3.1	19	85	7	66	25	1	6	66	1.26
29888903--29889158	76	3.4	75	85	4	327	41	9	9	39	1.71
29891650--29891697	24	2.0	24	95	0	87	43	8	16	31	1.78
29893475--29893528	26	2.1	26	96	0	99	46	22	3	27	1.69
29893573--29893700	7	18.3	7	67	14	52	42	29	0	26	1.61
29894186--29894239	20	2.7	20	82	0	72	27	35	7	29	1.84
29894447--29894491	20	2.2	20	88	0	63	31	20	13	35	1.91
29896983--29897459	239	2.0	239	97	0	900	39	7	17	35	1.77
29897538--29897593	26	2.2	26	87	6	78	30	28	17	23	1.97
29899155--29899217	29	2.2	30	80	13	78	22	6	33	38	1.79
29899195--29899453	59	4.3	59	83	7	281	35	2	28	33	1.70
29899224--29899431	29	7.0	30	66	23	104	36	2	27	32	1.72
29899191--29899453	118	2.2	120	83	4	327	35	2	28	33	1.71
29901412--29901465	10	5.0	11	79	16	60	53	1	3	40	1.29
29901411--29901465	16	3.4	16	82	5	74	52	1	3	41	1.29
29902476--29902654	59	3.0	60	90	1	279	30	11	8	48	1.70
29904808--29904972	29	5.5	30	77	7	149	35	4	26	33	1.76
29904791--29904991	59	3.4	58	80	5	190	35	4	24	34	1.77
29904791--29904972	30	6.1	31	75	16	154	36	4	25	33	1.76
29904828--29904991	30	5.6	29	77	9	111	35	4	23	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29905689--29905749	17	3.6	17	85	12	72	54	1	1	42	1.20
29905704--29905790	11	7.8	11	79	7	68	54	1	3	41	1.25
29905704--29905787	28	3.0	27	77	6	87	55	1	3	39	1.25
29905733--29905773	11	3.6	11	96	3	73	53	0	7	39	1.29
29905725--29905787	17	3.4	17	75	23	56	57	0	4	38	1.20
29905704--29905796	22	4.1	22	77	5	78	54	2	3	39	1.28
29905689--29905760	17	4.2	17	78	3	65	54	1	2	41	1.23
29906048--29907471	92	15.5	92	90	4	1545	34	18	14	32	1.91
29906978--29907308	40	7.4	40	65	25	155	36	16	12	34	1.87
29907527--29907933	102	4.0	102	85	2	491	15	27	19	38	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163