genome.fa.s8.2.7.7.80.10.50.1000.65.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  65  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16814810--16814882	31	2.4	31	86	4	103	32	13	5	47	1.66
16816018--16816071	26	2.1	26	82	6	65	20	3	7	68	1.30
16816208--16816391	4	44.2	4	68	20	71	21	4	3	70	1.21
16816277--16816391	19	6.3	18	74	19	87	23	3	1	71	1.11
16816558--16816637	20	3.8	21	75	12	74	25	1	6	67	1.21
16822290--16822343	27	2.0	28	92	3	92	33	3	25	37	1.74
16822780--16822965	52	3.6	52	91	0	284	24	12	25	37	1.90
16826573--16826759	52	3.6	52	85	0	239	25	15	22	35	1.94
16828193--16828280	26	3.3	26	82	1	86	27	22	20	29	1.99
16830781--16830819	10	3.9	10	83	9	53	76	0	0	23	0.78
16830783--16830831	11	4.5	11	80	14	57	79	0	0	20	0.73
16830791--16830831	16	2.6	16	85	14	66	80	0	0	19	0.71
16830784--16830829	23	1.9	23	86	8	65	80	0	0	19	0.71
16834531--16834581	20	2.5	20	87	0	75	54	13	17	13	1.70
16837839--16838475	50	12.8	50	81	3	534	40	17	19	23	1.91
16837838--16838475	100	6.4	100	81	1	589	40	17	19	23	1.91
16839880--16839928	21	2.3	22	92	3	82	20	0	2	77	0.87
16839901--16839949	17	3.3	16	73	26	54	18	0	4	77	0.92
16849878--16849941	31	2.1	30	83	13	78	35	0	0	64	0.94
16858003--16858138	66	2.1	66	98	0	263	30	13	18	38	1.89
16861381--16861465	26	3.3	26	84	0	125	31	29	18	20	1.96
16862252--16862456	69	2.9	70	81	3	216	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16862867--16862900	17	2.0	17	88	11	52	29	0	0	70	0.87
16862994--16863038	19	2.4	19	92	0	72	4	35	22	37	1.74
16867800--16867846	24	2.0	24	83	8	60	42	0	4	53	1.20
16868635--16868664	4	7.8	4	92	7	53	23	0	0	76	0.78
16869972--16870065	30	3.2	29	85	5	118	37	22	5	35	1.77
16870040--16870167	30	4.3	30	83	2	168	39	23	4	32	1.75
16873729--16873840	39	2.8	40	82	1	136	25	28	20	25	1.99
16873875--16874034	50	3.2	49	80	3	167	40	18	19	21	1.91
16875064--16875112	21	2.3	21	83	16	66	30	2	0	67	1.02
16875050--16875106	16	3.5	16	83	7	62	31	3	0	64	1.10
16875825--16875949	30	4.2	30	83	8	139	39	20	4	35	1.74
16875852--16876110	30	8.6	30	80	8	217	37	21	5	35	1.77
16875825--16875949	60	2.1	58	83	7	153	39	20	4	35	1.74
16875852--16876110	60	4.3	60	81	7	242	37	21	5	35	1.77
16875894--16876110	30	7.3	30	82	3	233	36	22	5	35	1.77
16875863--16876110	89	2.8	88	80	7	275	36	22	5	35	1.78
16881849--16881890	22	1.9	22	85	0	57	40	2	0	57	1.12
16882790--16882834	16	2.8	17	83	10	67	66	4	2	26	1.22
16885515--16885571	22	2.6	22	91	0	87	31	15	3	49	1.62
16891568--16891601	18	2.0	17	88	11	52	23	0	2	73	0.97
16913458--16913887	190	2.3	190	89	2	641	31	27	17	22	1.97
16914182--16914244	23	2.7	22	73	9	63	30	9	0	60	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16920672--16920712	21	2.0	20	90	9	66	19	21	31	26	1.97
16929871--16929904	13	2.7	13	90	4	52	76	2	20	0	0.92
16930054--16930118	31	2.1	31	97	0	121	27	6	27	38	1.80
16934009--16934051	18	2.2	19	84	12	52	6	16	0	76	0.99
16944307--16944382	28	2.7	28	82	11	93	36	27	10	25	1.89
16944384--16944452	26	2.5	27	79	13	79	27	28	17	26	1.97
16944442--16944517	28	2.7	27	80	10	64	36	26	14	22	1.92
16944666--16944771	55	1.9	55	88	0	158	22	27	14	35	1.93
16963981--16964016	13	2.8	13	100	0	72	36	5	25	33	1.79
16964877--16964918	16	2.6	16	85	11	59	38	0	0	61	0.96
16964877--16964923	15	2.8	18	75	21	57	38	0	0	61	0.96
16977359--16977389	5	6.2	5	100	0	62	0	19	0	80	0.71
16984791--16984819	12	2.4	12	100	0	58	48	13	10	27	1.75
16985770--16985882	57	2.0	57	98	0	217	16	26	11	45	1.82
16993452--16993492	21	2.0	21	85	9	57	19	19	7	53	1.68
16997154--16997286	4	32.5	4	76	10	117	68	4	1	25	1.17
16997153--16997273	33	3.9	31	74	18	99	67	4	1	25	1.20
16997197--16997278	29	2.9	27	80	14	76	69	4	0	25	1.08
16998471--16998508	20	2.0	20	94	5	69	34	0	7	57	1.28
16999181--16999349	66	2.7	61	90	6	250	48	2	6	42	1.44
16999241--16999341	31	3.3	30	67	9	87	46	2	6	43	1.45
17002651--17002878	30	7.7	29	80	10	198	40	5	18	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17002651--17002878	60	3.8	60	82	8	236	40	5	18	35	1.74
17005788--17006168	78	4.7	80	78	11	294	24	17	25	32	1.97
17005780--17006243	206	2.2	208	86	6	647	24	16	26	32	1.96
17005788--17006246	40	11.1	41	76	12	367	23	17	25	33	1.96
17018345--17018395	24	2.2	24	92	3	86	31	17	25	25	1.97
17019087--17019133	25	1.9	24	86	4	67	4	21	2	72	1.12
17020017--17020061	21	2.3	20	85	11	58	0	20	0	80	0.72
17023049--17023086	16	2.4	16	86	4	51	76	10	5	7	1.15
17024400--17024467	30	2.3	30	89	0	100	39	1	17	41	1.59
17028802--17028857	18	3.2	17	80	7	58	58	0	3	37	1.15
17030589--17030626	11	3.5	11	80	20	53	0	47	23	28	1.52
17030575--17030627	21	2.5	21	93	0	88	0	47	20	32	1.51
17030623--17030770	66	2.2	66	87	2	217	16	23	15	44	1.85
17036280--17037239	18	56.3	18	66	20	266	46	4	1	47	1.31
17036578--17036724	31	4.7	30	71	15	100	46	4	0	49	1.20
17036280--17037243	306	3.1	306	98	0	1856	46	4	1	47	1.31
17036884--17036994	30	4.1	30	66	25	84	45	2	0	52	1.15
17037001--17037075	26	3.1	24	67	22	66	45	6	0	48	1.29
17037226--17037250	13	1.9	13	100	0	50	48	0	0	52	1.00
17040113--17040138	6	4.3	6	100	0	52	0	34	50	15	1.45
17041702--17042228	41	12.8	41	77	8	414	24	25	25	24	2.00
17041702--17042210	82	6.2	81	79	6	463	24	25	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17047574--17047598	13	1.9	13	100	0	50	68	0	0	32	0.90
17051156--17051207	24	2.2	24	82	0	59	57	7	3	30	1.45
17062711--17062748	12	3.1	13	81	14	53	60	5	34	0	1.19
17066135--17066216	26	3.2	26	85	0	119	29	23	23	24	1.99
17067454--17067602	40	3.8	40	79	6	160	26	30	20	22	1.98
17067454--17067602	80	1.9	79	85	1	208	26	30	20	22	1.98
17069887--17070372	41	11.9	41	85	2	593	16	30	20	31	1.95
17069989--17070062	24	3.4	24	63	24	63	16	31	24	28	1.96
17076738--17076920	97	1.9	97	84	6	246	37	14	18	29	1.91
17077135--17077263	28	4.5	28	68	12	66	31	8	27	31	1.87
17077135--17077204	28	2.5	28	79	11	72	31	8	25	34	1.86
17077243--17077321	30	2.7	29	75	19	83	34	1	26	37	1.65
17077244--17077443	58	3.4	58	80	8	219	38	1	25	35	1.65
17077244--17077442	29	6.8	29	74	13	144	37	1	25	35	1.66
17077273--17077465	29	6.6	30	75	11	145	39	1	24	35	1.62
17077279--17077445	59	2.9	57	84	5	228	40	1	23	34	1.63
17077402--17077493	29	3.2	29	75	14	91	41	1	21	35	1.61
17077243--17077493	117	2.2	116	80	7	287	38	1	25	35	1.66
17077277--17077486	58	3.6	56	80	10	212	40	1	24	34	1.64
17078601--17078682	3	27.0	3	73	7	67	35	2	3	58	1.29
17078603--17078660	19	3.1	19	78	14	66	37	1	1	58	1.18
17079348--17079388	17	2.4	17	87	0	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17080880--17080948	19	3.8	17	81	11	66	66	4	2	26	1.24
17080900--17080943	19	2.3	19	92	0	70	70	4	4	20	1.23
17080921--17080964	17	2.6	17	85	7	54	63	4	2	29	1.26
17080997--17081069	10	7.4	9	73	13	56	53	2	2	41	1.29
17080976--17081069	19	4.8	19	81	13	102	53	2	3	41	1.29
17081059--17081111	20	2.7	20	81	0	70	58	1	9	30	1.40
17081086--17081133	23	2.1	22	81	11	53	60	4	6	29	1.40
17081363--17081486	10	12.3	10	70	16	60	39	3	0	57	1.15
17081377--17081427	9	5.4	9	90	9	84	39	0	0	60	0.97
17081364--17081441	29	2.6	30	87	6	122	37	0	0	62	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163