genome.fa.s8.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  110  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31078051--31078111	29	2.0	30	93	6	106	16	9	6	67	1.40
31082793--31082860	3	23.3	3	71	16	54	66	1	1	30	1.10
31083020--31083058	15	2.6	16	80	12	55	76	5	0	17	0.96
31083021--31083057	19	1.9	19	88	0	56	75	5	0	18	0.99
31087264--31087299	18	2.0	18	100	0	72	50	22	11	16	1.77
31094067--31094092	3	8.7	3	100	0	52	30	0	0	69	0.89
31094498--31094556	17	3.4	18	83	9	77	40	3	3	52	1.35
31094498--31094564	17	3.9	17	82	9	73	40	4	4	50	1.43
31094687--31094725	19	2.0	20	85	5	53	33	30	17	17	1.94
31096610--31096702	29	3.2	30	86	8	113	37	23	3	35	1.71
31096660--31096857	59	3.4	58	85	2	270	32	28	3	36	1.73
31096690--31096792	30	3.4	29	67	14	75	32	27	3	36	1.75
31098202--31098266	29	2.2	30	81	8	80	27	4	6	61	1.40
31101802--31101840	16	2.8	13	79	20	51	28	20	10	41	1.85
31103732--31104247	49	10.6	49	72	8	228	40	15	23	19	1.90
31103762--31104317	245	2.3	244	81	3	555	40	16	22	20	1.91
31103781--31104411	343	1.8	344	80	4	772	41	16	22	20	1.90
31106639--31106670	15	2.2	14	94	5	55	15	6	0	78	0.95
31106646--31106670	13	1.9	13	100	0	50	16	4	0	80	0.87
31106776--31106825	17	2.8	18	73	11	50	28	4	6	62	1.37
31107675--31107755	41	2.0	41	87	4	119	39	14	11	34	1.82
31115984--31116046	29	2.2	29	88	0	90	30	7	25	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31116003--31116340	59	5.7	59	73	9	235	34	8	23	33	1.85
31116149--31116340	29	6.5	30	68	15	80	33	6	24	35	1.82
31116262--31116349	29	3.0	29	78	6	97	38	3	20	37	1.70
31118235--31118293	11	5.2	11	80	10	57	50	5	0	44	1.24
31118237--31118292	17	3.2	17	85	9	78	48	5	0	46	1.25
31118235--31118293	23	2.6	23	83	5	66	50	5	0	44	1.24
31118237--31118312	12	6.4	12	74	7	57	51	5	2	40	1.38
31118237--31118293	6	9.8	6	81	7	64	49	5	0	45	1.24
31118334--31118363	15	2.0	15	93	0	51	66	0	3	30	1.07
31129973--31130617	201	3.3	199	85	6	864	36	21	23	18	1.95
31130919--31130979	28	2.2	29	79	8	72	37	0	4	57	1.20
31131863--31131893	12	2.5	13	94	5	55	58	0	0	41	0.98
31132959--31133252	58	5.0	59	87	5	436	34	30	2	33	1.69
31132959--31133252	117	2.5	116	90	4	450	34	30	2	33	1.69
31137554--31137599	21	2.2	21	85	11	60	13	0	32	54	1.39
31143559--31143595	18	2.0	19	89	5	58	51	2	0	45	1.15
31147794--31148226	147	2.9	146	94	1	742	34	14	22	28	1.94
31151366--31151413	25	2.0	25	84	12	64	41	0	2	56	1.11
31153412--31153479	34	2.0	34	100	0	136	29	11	32	26	1.92
31153520--31153981	123	3.8	121	81	6	513	28	33	12	24	1.92
31154669--31154719	3	18.0	3	84	8	54	0	31	3	64	1.11
31157967--31158002	14	2.6	14	90	0	54	19	16	36	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31158177--31158237	17	3.6	17	75	4	61	55	3	3	37	1.32
31158729--31158947	39	5.7	39	83	10	272	26	21	29	22	1.99
31158727--31158974	78	3.2	76	82	10	281	26	21	28	23	1.99
31158768--31158982	115	1.9	114	83	11	287	26	21	29	23	1.99
31159085--31159412	92	3.6	92	87	1	433	32	17	16	32	1.93
31159499--31159598	49	2.0	49	82	0	119	16	28	20	36	1.93
31159530--31159716	48	3.9	47	75	7	153	12	27	24	36	1.91
31159533--31159716	96	1.9	96	80	2	210	12	27	24	35	1.91
31159782--31160036	50	5.1	49	68	10	151	12	25	23	39	1.89
31159690--31160071	100	3.8	101	87	1	572	12	25	21	39	1.89
31159690--31160070	201	1.9	200	91	2	622	12	25	22	39	1.89
31161221--31161274	26	2.1	26	82	6	65	3	16	1	77	1.00
31166247--31166308	21	3.0	21	68	15	56	51	6	1	40	1.37
31166379--31166409	14	2.2	14	100	0	62	25	6	0	67	1.14
31167355--31167400	20	2.3	20	85	3	58	19	23	0	56	1.42
31173999--31174135	30	4.6	30	74	11	95	36	2	25	35	1.68
31173912--31174121	30	7.1	29	75	12	144	35	2	28	34	1.70
31179918--31180380	222	2.1	222	91	2	743	32	20	17	29	1.95
31180676--31180979	147	2.1	148	91	3	506	34	15	23	26	1.94
31187631--31187897	138	1.9	138	83	1	347	35	16	18	29	1.93
31188047--31188246	69	2.9	69	85	3	276	41	18	9	31	1.82
31189702--31189749	24	2.0	24	84	11	64	29	12	2	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31190873--31190925	24	2.2	24	89	0	79	32	32	22	13	1.92
31190838--31190957	61	2.0	61	86	0	168	32	32	22	12	1.91
31190897--31190972	37	2.1	37	82	0	89	38	28	17	15	1.90
31192293--31192331	17	2.2	18	86	4	53	41	0	2	56	1.13
31192760--31192821	21	2.8	23	73	9	74	37	27	16	19	1.93
31193057--31193090	10	3.4	10	87	0	50	58	0	0	41	0.98
31194077--31194186	30	3.7	30	84	6	134	37	26	1	34	1.67
31194080--31194303	59	3.8	58	82	5	247	35	26	1	36	1.67
31194168--31194271	28	3.6	29	68	18	81	33	24	2	39	1.70
31194081--31194298	30	7.5	29	70	16	114	35	26	1	36	1.67
31207905--31207967	21	2.8	23	74	13	69	34	26	17	20	1.95
31207922--31207961	21	1.9	21	94	0	71	35	30	12	22	1.91
31208203--31208236	10	3.4	10	87	0	50	58	0	0	41	0.98
31209232--31209459	30	7.7	29	76	7	161	38	20	2	38	1.67
31209232--31209399	90	1.9	90	82	5	214	40	17	2	39	1.65
31209232--31209399	60	2.8	60	85	0	228	40	17	2	39	1.65
31209228--31209418	60	3.2	60	81	2	213	40	19	2	37	1.65
31209382--31209503	58	2.1	59	81	7	142	35	28	3	32	1.74
31212936--31212975	21	1.9	21	85	10	55	42	5	17	35	1.71
31214207--31214472	144	1.8	146	86	6	389	38	8	23	29	1.84
31214495--31214730	58	4.1	58	82	8	248	31	3	28	36	1.74
31214516--31214726	29	7.2	29	77	10	196	31	2	27	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31215898--31215956	31	1.9	30	86	3	82	40	3	0	55	1.16
31215894--31215956	21	2.9	22	81	6	76	38	3	0	58	1.14
31216743--31216837	17	5.7	15	82	15	100	49	1	2	47	1.20
31216759--31216836	6	13.8	6	75	16	78	50	1	2	46	1.23
31216743--31216841	33	3.0	32	79	20	114	50	1	2	46	1.19
31217099--31217826	92	7.9	92	92	1	1167	32	18	15	32	1.93
31217099--31217826	185	4.0	183	92	1	1181	32	18	15	32	1.93
31217099--31217823	277	2.6	275	92	1	1184	32	19	15	32	1.93
31229490--31229548	28	2.1	28	84	6	75	28	11	28	30	1.92
31229711--31230057	30	11.7	30	76	11	290	33	3	26	36	1.74
31229721--31230056	59	5.7	59	84	3	392	33	3	26	36	1.75
31231194--31231257	22	2.9	22	82	11	78	35	3	1	59	1.23
31231276--31231333	13	4.8	12	77	14	57	39	3	3	53	1.35
31231281--31231319	16	2.4	16	86	0	51	41	5	0	53	1.23
31232058--31232106	17	3.0	16	85	5	62	44	0	0	55	0.99
31232080--31232183	6	17.8	6	73	19	87	51	0	2	44	1.22
31232080--31232188	11	10.0	11	74	18	68	52	0	2	44	1.21
31232080--31232154	17	4.7	16	87	11	109	52	0	4	44	1.20
31232064--31232150	31	2.7	31	84	10	104	50	0	3	45	1.18
31232064--31232171	17	6.6	17	81	8	107	51	0	2	45	1.15
31232148--31232191	23	2.0	22	86	4	61	54	2	0	43	1.12
31233166--31233331	21	7.3	21	80	11	170	18	37	6	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31233180--31233375	27	8.0	26	69	17	100	17	39	6	37	1.75
31233166--31233331	42	3.7	42	78	17	197	18	37	6	37	1.77
31233167--31233375	96	2.2	96	90	0	321	17	39	6	36	1.75
31233188--31233344	48	3.3	46	78	13	183	18	38	7	35	1.78
31235727--31235789	31	2.0	32	84	9	85	30	7	9	52	1.62
31235727--31235773	16	2.9	16	75	6	51	29	6	10	53	1.60
31237318--31237363	20	2.3	20	85	14	60	17	4	0	78	0.91
31237318--31237360	15	2.9	14	87	12	68	16	4	0	79	0.90
31237332--31237375	21	2.1	21	83	8	54	20	6	2	70	1.21
31238930--31238994	25	2.6	25	87	4	96	38	24	18	18	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163