genome.fa.s8.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  95  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26996898--26996999	51	2.0	51	94	0	177	29	11	27	31	1.92
26996898--26997031	51	2.6	51	86	0	151	29	13	25	31	1.94
26998257--26998418	50	3.2	50	79	1	173	22	25	18	33	1.97
27010136--27010259	30	4.1	29	81	10	133	31	2	25	40	1.69
27010136--27010249	60	1.9	60	87	3	167	31	2	25	40	1.69
27010697--27010735	19	2.0	20	90	5	62	51	28	5	15	1.64
27011472--27011510	20	2.0	20	94	0	69	76	0	0	23	0.78
27011473--27011516	20	2.2	20	87	0	61	75	2	2	20	1.03
27011582--27011626	16	2.9	16	86	3	56	80	0	2	17	0.82
27011590--27011626	12	3.2	12	85	14	51	83	0	0	16	0.64
27012379--27012426	22	2.1	24	84	7	64	56	0	20	22	1.43
27012379--27012426	23	2.1	23	84	7	62	56	0	20	22	1.43
27013147--27013211	27	2.4	27	76	5	69	44	0	3	52	1.16
27018934--27018976	8	5.4	8	83	10	61	32	0	0	67	0.91
27018934--27018976	17	2.7	15	82	10	59	32	0	0	67	0.91
27019539--27019570	3	10.7	3	100	0	64	65	0	0	34	0.93
27026105--27026158	19	2.8	19	82	2	63	62	1	3	31	1.23
27026116--27026157	18	2.3	18	84	12	50	66	0	2	30	1.04
27026793--27026825	7	4.9	7	96	3	59	42	0	0	57	0.98
27027394--27027474	31	2.7	29	84	5	90	34	7	9	48	1.65
27027833--27027871	15	2.6	15	88	8	53	33	12	15	38	1.85
27031513--27031569	23	2.4	23	76	2	60	43	22	5	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27034845--27034929	37	2.4	36	82	11	111	58	15	3	22	1.52
27034831--27034958	21	6.3	21	71	16	92	57	15	3	23	1.55
27034888--27034929	15	2.7	16	82	14	52	61	11	2	23	1.42
27034825--27034933	58	1.9	58	86	3	159	58	16	4	20	1.55
27034920--27034970	23	2.2	23	92	0	84	52	15	1	29	1.54
27035082--27035145	30	2.1	30	91	5	103	65	3	6	25	1.31
27035296--27035339	23	1.9	23	100	0	88	45	25	11	18	1.82
27044844--27045023	94	1.9	93	88	3	272	41	3	5	49	1.42
27066938--27067169	90	2.6	89	81	5	265	36	17	10	35	1.84
27067409--27067733	179	1.8	181	87	5	489	33	9	19	37	1.84
27067409--27067737	93	3.6	92	83	6	429	33	9	19	37	1.84
27070001--27070060	28	2.1	28	87	0	84	26	10	31	31	1.89
27070069--27070468	29	13.8	28	69	18	212	35	4	28	31	1.77
27070019--27070470	59	7.7	59	87	2	583	34	4	29	31	1.77
27070369--27070468	28	3.5	29	69	18	75	38	4	26	32	1.75
27070511--27070861	162	2.2	163	86	4	478	40	12	20	25	1.88
27071130--27071163	11	2.8	12	86	13	52	41	0	0	58	0.98
27071136--27071203	17	3.7	17	71	21	57	45	1	0	52	1.09
27071134--27071215	18	4.5	17	74	15	65	48	1	1	48	1.17
27071485--27072244	76	10.0	76	94	0	1268	33	16	15	34	1.91
27081647--27082036	29	13.5	28	67	20	94	37	2	26	33	1.69
27081611--27082095	59	8.4	59	83	4	533	36	2	27	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27081644--27082066	229	1.9	228	86	3	609	37	2	26	33	1.71
27082785--27082841	17	3.3	17	87	2	69	50	1	1	45	1.22
27098275--27098330	21	2.7	21	81	8	62	37	3	39	19	1.69
27099405--27099451	24	2.0	24	83	8	60	61	8	2	27	1.36
27101515--27101581	30	2.3	30	86	2	100	29	19	14	35	1.92
27103992--27104135	54	3.0	45	81	16	189	29	11	13	45	1.78
27104001--27104110	54	2.0	54	98	0	211	27	10	16	46	1.78
27113955--27114013	30	2.0	30	89	0	91	23	28	16	30	1.97
27115948--27115988	15	2.9	14	79	20	50	36	14	7	41	1.74
27116312--27116615	165	1.8	167	81	6	377	43	12	11	32	1.78
27116316--27116614	84	3.6	80	79	6	269	43	12	12	32	1.79
27116822--27116918	49	2.0	49	80	11	110	50	9	2	38	1.46
27124438--27124488	19	2.5	19	84	9	57	27	3	1	66	1.20
27124436--27124486	20	2.4	22	78	15	63	25	3	1	68	1.17
27124494--27124535	17	2.5	17	82	14	52	42	0	4	52	1.22
27127200--27127330	58	2.2	58	86	5	183	44	16	7	32	1.75
27127515--27127567	11	5.2	10	77	11	54	64	3	0	32	1.12
27127511--27127572	19	3.0	20	76	17	65	59	3	0	37	1.13
27127496--27127553	30	1.9	31	89	3	91	60	5	0	34	1.19
27127488--27127567	19	4.1	20	72	18	60	60	3	0	36	1.15
27127487--27127567	30	2.8	27	77	17	83	59	3	0	37	1.15
27127487--27127575	10	9.5	8	76	21	52	59	3	0	37	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27127914--27127947	18	1.9	17	94	5	59	52	2	0	44	1.16
27127914--27127947	17	1.9	18	88	5	52	52	2	0	44	1.16
27136473--27136522	19	2.6	19	81	9	57	30	4	2	64	1.23
27136719--27136860	20	7.2	19	67	21	69	34	1	3	60	1.22
27136808--27136910	29	3.5	30	73	22	87	43	0	1	54	1.11
27136809--27136924	9	12.2	9	71	17	67	43	0	1	54	1.10
27138070--27138159	17	5.5	17	64	21	57	37	0	2	60	1.09
27139739--27139786	18	2.5	19	76	10	53	31	27	16	25	1.97
27143510--27143606	42	2.3	42	94	1	167	26	26	12	34	1.92
27144755--27144791	19	1.9	19	88	0	56	45	16	8	29	1.76
27146390--27146494	42	2.5	40	76	17	106	7	7	17	67	1.38
27146484--27146523	12	3.3	12	89	0	62	7	0	17	75	1.03
27146390--27146539	21	7.0	22	72	13	82	8	5	17	69	1.32
27146456--27146538	24	3.8	22	77	14	75	7	2	19	71	1.21
27155823--27155863	19	2.1	20	86	4	57	53	17	7	21	1.67
27167859--27167941	31	2.7	31	96	0	157	18	14	19	48	1.81
27168869--27168906	14	2.5	15	87	8	51	78	5	0	15	0.91
27180672--27180709	6	6.5	6	87	3	51	44	0	5	50	1.24
27183736--27183803	4	16.2	4	74	17	50	69	1	7	22	1.22
27183718--27183808	37	2.4	38	87	5	123	67	1	8	23	1.25
27183655--27183779	17	6.8	16	65	24	52	64	1	9	24	1.33
27189658--27189704	25	2.0	23	84	16	60	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27190053--27190099	15	2.9	17	78	12	53	14	14	23	46	1.82
27199519--27199658	73	1.9	73	82	2	174	22	17	25	33	1.96
27211497--27211732	52	4.5	52	94	0	409	27	15	22	34	1.94
27214717--27214759	21	2.0	21	86	0	59	16	13	13	55	1.69
27216234--27216272	19	2.1	19	100	0	78	25	10	10	53	1.66
27217494--27217554	32	1.9	32	83	6	79	54	29	8	8	1.59
27218016--27218060	23	2.0	23	81	0	54	51	11	6	31	1.63
27221141--27221188	24	2.0	24	87	4	69	70	0	20	8	1.12
27223628--27223652	12	2.1	12	100	0	50	72	0	8	20	1.10
27223851--27223875	11	2.3	11	100	0	50	48	0	52	0	1.00
27224395--27224595	29	7.0	29	83	8	144	38	19	0	40	1.59
27224385--27224734	30	11.9	30	84	5	396	36	23	1	38	1.65
27224385--27224759	59	6.4	59	81	6	397	35	23	2	38	1.67
27231163--27231226	11	5.8	11	75	0	65	21	32	23	21	1.98
27231163--27231226	22	2.9	22	85	0	83	21	32	23	21	1.98
27231163--27231226	33	1.9	33	83	0	83	21	32	23	21	1.98
27238414--27238488	22	3.4	22	90	3	116	18	29	26	25	1.98
27238414--27238490	11	7.0	11	71	0	55	18	29	27	24	1.98
27238479--27238520	20	2.1	20	86	0	57	19	23	21	35	1.96
27240413--27240882	49	9.6	49	70	16	278	37	18	26	17	1.93
27240430--27240886	98	4.7	98	87	1	639	36	18	26	17	1.93
27240430--27240947	98	5.3	98	84	3	567	37	19	26	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27240984--27241311	102	3.2	103	91	2	500	36	16	17	29	1.92
27243248--27243448	30	6.8	30	87	2	280	34	26	1	36	1.68
27243248--27243466	59	3.7	59	84	3	269	34	26	2	36	1.71
27243248--27243466	89	2.5	89	86	4	307	34	26	2	36	1.71
27248707--27248745	13	2.9	14	80	7	53	53	0	2	43	1.14
27249637--27249669	14	2.5	13	95	5	57	45	0	0	54	0.99
27249641--27249691	16	3.0	16	85	8	57	43	5	0	50	1.26
27253108--27253139	16	2.0	16	93	0	55	53	3	18	25	1.59
27253738--27253963	94	2.4	93	88	3	321	26	17	25	30	1.97
27260331--27260367	16	2.3	16	90	0	56	51	16	0	32	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163