genome.fa.s8.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  141  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38260638--38260667	16	1.9	15	93	6	51	33	0	0	66	0.92
38260766--38260854	31	3.0	30	82	8	101	33	10	13	42	1.78
38262826--38262918	29	3.2	29	71	18	84	33	5	32	29	1.80
38262833--38262987	30	5.2	30	68	19	110	37	5	27	29	1.78
38262828--38262992	59	2.8	58	85	4	215	35	5	29	29	1.80
38262828--38263024	59	3.4	59	81	6	213	34	5	29	30	1.79
38262996--38263205	30	7.0	30	93	1	332	34	4	24	36	1.75
38263877--38263924	21	2.3	21	86	10	64	10	12	4	72	1.24
38263907--38263962	24	2.4	23	79	8	69	17	14	5	62	1.49
38265013--38265071	17	3.6	16	84	6	55	61	3	1	33	1.23
38265030--38265082	23	2.3	23	84	9	65	62	0	0	37	0.96
38265042--38265100	28	2.1	28	80	0	64	61	5	1	32	1.28
38265371--38266103	68	10.8	68	92	0	1126	27	19	18	35	1.95
38274822--38274915	29	3.2	30	71	18	97	39	3	26	30	1.72
38274818--38275005	59	3.2	57	82	8	225	36	3	29	30	1.73
38274986--38275110	30	4.2	30	93	1	207	32	4	27	36	1.75
38275553--38275600	21	2.3	21	86	10	64	10	12	4	72	1.24
38275583--38275638	24	2.4	23	79	8	69	17	14	5	62	1.49
38276693--38276760	6	11.3	6	78	12	68	54	2	1	41	1.24
38276695--38276754	31	1.9	31	89	0	93	55	3	1	40	1.27
38276696--38276769	17	4.6	16	78	11	80	58	2	1	37	1.21
38276734--38276788	28	2.0	28	85	0	74	58	3	0	38	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38276740--38276798	28	2.1	28	80	0	64	61	5	1	32	1.28
38277365--38277423	6	9.8	6	73	14	50	38	3	1	55	1.26
38277381--38277408	14	2.0	14	100	0	56	35	7	0	57	1.26
38278548--38278599	17	2.9	18	83	8	63	75	0	21	3	0.97
38279289--38279419	30	4.4	30	92	1	203	38	24	4	32	1.76
38279326--38279380	15	3.3	19	63	36	54	40	23	7	29	1.81
38284835--38285466	38	16.8	38	69	17	419	34	15	17	33	1.91
38284835--38285513	76	9.0	76	88	6	1026	34	15	17	32	1.91
38285344--38285470	65	2.0	65	100	0	254	34	16	16	32	1.92
38285863--38285921	6	9.8	6	73	14	50	38	3	1	55	1.26
38285879--38285906	14	2.0	14	100	0	56	35	7	0	57	1.26
38287050--38287100	17	2.9	17	80	11	59	72	0	23	3	1.01
38287380--38287411	5	6.2	5	96	3	55	21	56	21	0	1.43
38287786--38287861	30	2.6	30	82	2	100	36	25	3	34	1.74
38287790--38287871	30	2.8	30	81	5	87	35	20	4	39	1.74
38293959--38294025	31	2.2	30	84	5	82	32	10	13	43	1.78
38293982--38294038	29	1.9	29	85	3	78	33	8	12	45	1.72
38304747--38304799	20	2.6	19	74	11	52	28	0	1	69	0.99
38305431--38305455	2	12.5	2	100	0	50	48	0	0	52	1.00
38310019--38310046	2	14.0	2	100	0	56	50	0	0	50	1.00
38311538--38311567	15	2.0	15	93	0	51	26	23	13	36	1.92
38312450--38312482	11	2.8	12	86	4	50	39	0	6	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38312602--38312658	22	2.7	22	78	10	57	40	0	5	54	1.23
38316529--38316562	3	11.3	3	100	0	68	32	0	0	67	0.91
38317156--38317190	13	2.6	14	86	4	54	25	14	20	40	1.90
38328504--38328530	6	4.5	6	100	0	54	85	0	0	14	0.61
38329469--38329503	18	2.1	17	89	10	54	34	0	2	62	1.10
38330184--38330235	20	2.6	20	84	0	68	28	28	9	32	1.89
38330459--38330514	20	2.8	20	83	0	67	30	26	10	32	1.90
38330480--38330534	20	2.7	21	77	8	60	32	23	10	32	1.90
38332210--38332270	23	2.7	23	81	0	77	32	18	14	34	1.91
38335024--38335073	22	2.2	23	78	3	57	58	0	2	40	1.10
38335026--38335061	19	2.0	18	89	10	56	55	0	0	44	0.99
38336128--38336195	32	2.2	31	84	7	84	25	4	2	67	1.23
38336176--38336218	23	1.9	22	90	4	68	27	2	2	67	1.15
38337320--38337374	29	1.9	29	85	10	78	21	9	3	65	1.37
38345265--38345357	43	2.2	43	100	0	186	34	24	7	33	1.84
38350288--38350312	12	2.1	12	100	0	50	44	8	16	32	1.76
38354076--38354110	17	1.9	19	88	11	56	17	0	14	68	1.21
38354635--38354692	21	2.8	21	84	2	73	31	0	1	67	1.01
38357828--38357890	30	2.0	31	93	6	110	20	20	4	53	1.63
38358150--38358199	22	2.2	23	80	20	61	64	0	2	34	1.05
38372511--38372540	14	2.1	15	93	6	53	46	0	3	50	1.18
38377175--38377521	56	5.9	56	77	11	302	20	18	31	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38377520--38378415	450	2.0	450	91	0	1443	30	11	21	35	1.90
38384248--38384320	30	2.5	28	77	12	76	34	9	2	53	1.48
38384588--38384681	43	2.2	44	78	5	102	50	8	11	29	1.69
38387767--38387804	16	2.4	16	82	8	51	39	2	7	50	1.46
38388477--38388501	10	2.5	10	100	0	50	20	0	0	80	0.72
38388613--38388666	10	4.9	11	75	20	51	38	0	0	61	0.96
38392022--38392264	58	4.0	58	82	8	240	25	16	11	46	1.80
38392054--38392175	31	4.0	31	76	17	105	27	16	9	46	1.78
38392040--38392204	31	5.7	27	71	22	95	27	16	9	46	1.78
38392022--38392264	60	4.0	59	82	8	260	25	16	11	46	1.80
38392411--38392543	31	4.4	31	70	11	105	45	10	16	27	1.80
38392411--38392586	89	2.0	89	81	2	210	50	10	14	25	1.73
38392704--38392737	16	2.2	16	90	10	54	38	0	2	58	1.13
38394730--38394760	14	2.2	14	94	0	53	32	35	9	22	1.87
38403942--38403975	17	2.0	17	94	0	59	55	0	5	38	1.24
38410303--38410339	17	2.1	18	90	5	58	51	5	0	43	1.24
38413424--38413739	59	5.3	59	93	1	526	33	6	28	31	1.81
38413424--38413739	119	2.7	118	93	2	526	33	6	28	31	1.81
38413721--38413935	30	7.2	30	95	0	376	37	2	23	36	1.69
38414040--38414356	161	2.0	162	85	4	435	44	13	16	25	1.84
38414091--38414441	161	2.2	160	80	6	388	47	13	15	22	1.81
38415086--38415120	15	2.3	15	90	0	52	28	8	2	60	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38415090--38415145	24	2.3	24	81	6	69	30	7	7	55	1.54
38415827--38415896	17	3.9	18	77	9	65	42	2	1	52	1.24
38415836--38415896	17	3.4	17	79	6	68	47	3	1	47	1.28
38415836--38415896	6	10.2	6	72	13	54	47	3	1	47	1.28
38416219--38416780	38	15.8	38	73	19	357	27	20	17	33	1.96
38416267--38416521	31	7.7	31	69	21	162	26	19	18	34	1.95
38416228--38416785	68	8.0	68	83	10	569	27	20	18	33	1.96
38416219--38416780	107	5.3	106	77	11	528	27	20	17	33	1.96
38416298--38416785	175	2.8	178	82	9	628	27	20	18	33	1.96
38428676--38428933	59	4.4	58	91	3	392	33	5	29	31	1.81
38428711--38428923	29	7.2	29	68	11	155	34	6	28	30	1.83
38428682--38428902	30	7.4	30	67	10	123	34	4	28	32	1.79
38428707--38428922	30	7.3	30	67	16	146	33	6	29	30	1.83
38428913--38429083	30	5.6	30	94	2	297	36	2	23	37	1.68
38429176--38429492	161	2.0	162	86	3	451	44	13	16	25	1.83
38429227--38429561	161	2.1	160	80	6	390	46	13	16	23	1.82
38430236--38430270	15	2.3	15	90	0	52	28	8	2	60	1.41
38430240--38430295	24	2.3	24	81	6	69	30	7	7	55	1.54
38430981--38431024	17	2.5	18	88	3	63	52	4	2	40	1.34
38432660--38433225	279	2.0	279	93	0	952	31	24	14	29	1.94
38441764--38441836	36	2.0	36	94	0	128	31	9	17	41	1.82
38442389--38442427	11	3.5	11	86	6	51	28	2	0	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38442482--38442516	15	2.3	15	85	0	52	22	0	2	74	0.95
38445744--38445808	30	2.2	30	100	0	130	41	3	20	35	1.68
38456039--38456230	69	2.8	66	76	10	199	44	13	10	31	1.78
38459540--38459872	30	11.3	29	74	16	233	33	30	2	33	1.72
38459540--38459813	88	3.1	84	79	13	277	33	31	2	32	1.73
38459495--38460024	59	9.0	59	83	6	555	33	29	2	34	1.72
38459737--38460020	29	9.7	30	65	23	133	33	27	2	36	1.72
38473516--38473551	18	2.0	18	88	0	54	52	2	0	44	1.15
38475345--38475428	27	3.1	27	61	16	66	23	28	9	38	1.86
38475326--38475431	53	2.0	53	98	0	203	23	28	10	37	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163