genome.fa.s8.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  106  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30079720--30079873	68	2.3	68	85	2	193	35	31	12	20	1.89
30080216--30080273	30	1.9	30	92	0	98	53	17	8	20	1.70
30082635--30082669	15	2.2	17	90	10	56	22	22	0	54	1.45
30091983--30092052	33	2.1	33	84	5	88	40	4	15	40	1.67
30092384--30092432	25	2.0	25	92	8	82	32	0	30	36	1.58
30094263--30094472	92	2.3	92	81	8	243	38	16	8	36	1.80
30094550--30094598	9	5.7	9	75	15	50	30	0	0	69	0.89
30094549--30094620	25	2.8	25	85	10	85	31	0	0	68	0.90
30094727--30094952	87	2.6	85	85	4	303	33	11	22	33	1.90
30094792--30094993	87	2.3	85	82	11	241	32	10	18	38	1.85
30097004--30097177	30	5.9	30	86	3	219	36	3	24	35	1.72
30097004--30097177	89	2.0	89	87	4	253	36	3	24	35	1.72
30097903--30097958	29	1.9	29	82	7	69	26	10	3	58	1.48
30098664--30098726	17	3.7	17	71	0	54	53	7	3	34	1.46
30099172--30099222	23	2.2	23	96	0	93	43	5	7	43	1.57
30104117--30104152	19	1.9	19	88	5	56	38	11	0	50	1.38
30109613--30109669	29	2.0	29	83	13	73	64	1	1	31	1.13
30109775--30109812	15	2.5	15	84	12	51	65	5	10	18	1.41
30109803--30109865	23	2.6	24	80	14	76	71	4	1	22	1.13
30109801--30109875	35	2.1	35	80	11	82	69	4	1	25	1.14
30111973--30112020	25	1.9	25	91	0	78	64	8	8	18	1.46
30113495--30113640	75	2.0	73	90	2	229	30	13	4	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30115071--30115123	25	2.1	25	89	0	79	50	7	0	41	1.30
30119556--30119618	2	33.0	2	76	9	51	52	0	1	46	1.10
30122597--30122630	12	2.8	12	86	0	50	5	14	41	38	1.70
30123256--30123329	13	6.5	11	70	21	55	60	2	2	33	1.25
30123316--30123358	20	2.3	19	84	8	52	69	4	4	20	1.25
30123322--30123370	20	2.4	20	75	3	53	61	4	6	28	1.38
30124590--30124825	92	2.6	92	95	0	427	44	5	8	41	1.58
30124875--30125029	77	2.0	78	91	2	249	49	6	0	43	1.33
30125070--30125109	15	2.5	17	88	8	57	50	2	0	47	1.14
30124947--30125155	92	2.2	94	89	4	325	44	6	4	44	1.48
30125222--30125270	22	2.2	22	85	0	62	30	40	6	22	1.78
30126239--30126285	24	2.0	23	83	4	58	36	0	2	61	1.08
30126519--30126588	35	2.0	35	83	5	88	34	5	5	54	1.48
30126611--30126690	21	3.4	24	70	16	85	38	7	1	52	1.38
30126636--30126715	21	3.6	21	71	12	79	35	8	2	53	1.45
30126598--30126718	47	2.6	47	96	1	217	38	9	1	50	1.44
30127743--30127827	28	3.0	28	91	3	125	29	4	1	64	1.21
30127742--30127791	21	2.5	20	78	12	57	32	2	0	66	1.03
30127738--30127827	30	3.1	29	88	6	128	28	5	1	64	1.23
30128659--30128919	58	4.5	59	78	8	264	37	15	18	28	1.91
30128659--30128919	118	2.2	118	82	8	302	37	15	18	28	1.91
30130373--30130420	26	1.9	26	87	8	73	43	8	0	47	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30130488--30130545	25	2.3	26	88	8	84	51	10	0	37	1.36
30131832--30131883	20	2.6	20	90	0	86	34	5	1	57	1.33
30133192--30133313	21	5.6	21	75	10	111	55	3	6	34	1.42
30133348--30133397	20	2.6	20	84	6	59	56	6	4	34	1.43
30134776--30134824	25	1.9	25	87	4	71	48	0	8	42	1.32
30134994--30135055	17	3.6	16	77	18	63	27	11	1	59	1.41
30134997--30135055	12	5.2	11	74	13	57	27	10	1	61	1.38
30135056--30135088	12	2.8	12	90	0	57	66	0	6	27	1.15
30135058--30135119	17	4.1	15	76	19	58	59	1	9	29	1.38
30135285--30135335	20	2.5	20	77	3	57	66	3	0	29	1.09
30135330--30135395	25	2.8	23	75	20	73	43	6	0	50	1.27
30136761--30136821	10	5.5	11	75	14	54	29	1	1	67	1.10
30136761--30136836	33	2.3	33	84	8	111	31	1	2	64	1.15
30136761--30136814	13	4.7	12	77	15	60	31	1	1	64	1.14
30138218--30138273	20	2.7	20	88	5	85	58	3	5	32	1.37
30138240--30138332	31	3.0	31	79	7	100	56	2	5	35	1.34
30138222--30138374	80	1.9	81	85	6	213	58	2	4	34	1.33
30138243--30138340	30	3.2	30	75	10	90	57	3	4	35	1.33
30138306--30138360	20	2.8	19	78	8	65	65	3	1	29	1.20
30139724--30139771	24	2.0	24	84	8	62	39	2	0	58	1.10
30139746--30139777	12	2.8	12	90	9	50	43	0	0	56	0.99
30140012--30140063	23	2.2	25	77	19	67	65	0	3	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30140021--30140064	11	4.0	11	85	8	63	65	0	2	31	1.05
30140021--30140064	23	2.0	21	91	8	70	65	0	2	31	1.05
30140278--30140323	23	2.0	23	82	0	56	58	0	2	39	1.10
30140429--30140467	18	2.2	18	86	9	53	48	0	0	51	1.00
30144147--30145044	450	2.0	450	97	0	1697	23	15	30	31	1.95
30162715--30162868	42	3.7	42	84	1	211	27	25	10	37	1.88
30162715--30162888	42	4.1	42	82	2	199	27	25	11	36	1.90
30162715--30162888	85	2.1	83	82	4	206	27	25	11	36	1.90
30166038--30166085	25	1.9	25	91	0	78	35	0	10	54	1.35
30167173--30167215	20	2.1	21	86	4	61	60	0	6	32	1.23
30168213--30168262	20	2.5	20	76	20	52	32	0	10	58	1.31
30168280--30168323	16	2.8	16	82	3	63	29	0	2	68	1.02
30170166--30170213	16	3.1	15	82	8	60	68	6	0	25	1.12
30170254--30170598	150	2.3	150	84	6	423	53	12	0	33	1.45
30170233--30170598	149	2.5	148	80	9	417	53	12	0	33	1.44
30172935--30172967	13	2.5	13	90	0	57	0	21	0	78	0.75
30173528--30173588	17	3.5	17	77	2	59	49	11	18	21	1.78
30177588--30177629	21	2.0	21	90	0	66	57	21	7	14	1.61
30181020--30181065	22	2.1	22	95	0	83	23	6	28	41	1.79
30192483--30192668	94	2.0	94	96	0	345	42	10	26	20	1.84
30193285--30193340	26	2.2	26	93	6	96	39	19	12	28	1.88
30195133--30195185	25	2.1	25	96	0	97	45	7	0	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30195921--30195955	18	2.0	18	88	5	54	2	22	14	60	1.48
30196240--30196276	19	1.9	19	94	0	65	0	43	0	56	0.99
30200239--30200369	42	3.1	42	89	1	208	35	11	28	25	1.90
30201011--30201063	21	2.5	21	81	0	61	33	13	18	33	1.90
30203194--30203275	28	2.8	30	72	9	89	40	9	0	50	1.36
30204407--30204432	9	2.9	9	100	0	52	69	0	0	30	0.89
30204519--30204545	14	1.9	14	100	0	54	85	0	14	0	0.61
30204979--30205031	24	2.2	24	83	6	63	18	13	0	67	1.22
30205094--30205137	20	2.2	20	84	4	54	43	6	0	50	1.29
30207541--30207591	22	2.3	22	93	0	84	35	3	11	49	1.58
30211543--30211578	18	2.0	18	88	0	54	52	5	0	41	1.24
30211470--30211746	101	2.8	97	80	9	297	51	9	7	31	1.62
30214381--30214440	22	2.8	21	78	14	59	73	8	8	10	1.26
30214518--30214556	13	2.9	14	84	7	53	28	2	0	69	1.02
30215712--30215777	32	2.1	32	100	0	132	28	21	16	33	1.95
30216288--30216321	12	2.8	12	90	0	50	2	14	44	38	1.61
30217395--30217456	29	2.1	30	81	3	72	29	8	11	51	1.66
30218786--30218814	12	2.5	12	94	5	51	68	0	0	31	0.89
30218833--30218865	14	2.4	14	94	0	57	69	12	0	18	1.18
30218878--30218930	19	2.8	19	80	11	56	75	9	0	15	1.04
30228829--30228898	28	2.5	28	71	15	72	34	0	1	64	1.03
30229341--30229380	3	13.3	3	94	0	71	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30231574--30231618	23	2.0	23	86	8	65	42	0	2	55	1.12
30233914--30233970	23	2.5	22	80	13	62	64	7	5	22	1.38
30233919--30233969	22	2.2	23	83	13	61	66	7	5	19	1.38
30236071--30236108	19	2.0	19	94	0	67	21	23	15	39	1.92
30236401--30236557	50	3.1	51	75	9	167	29	22	15	33	1.94
30236235--30236689	202	2.3	202	86	2	628	26	18	19	36	1.94
30236250--30236714	101	4.6	101	77	2	409	26	18	19	36	1.94
30240688--30240749	23	2.6	24	89	7	99	41	24	25	8	1.82
30240661--30240754	25	3.8	25	83	8	113	38	21	28	11	1.88
30243431--30243482	21	2.5	21	87	6	70	69	3	13	13	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163