genome.fa.s8.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  140  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37923250--37923359	42	2.6	43	88	4	161	27	21	30	20	1.98
37927860--37927912	21	2.5	20	77	19	63	67	0	30	1	1.01
37931908--37931953	24	1.9	24	82	8	58	34	15	15	34	1.89
37934441--37934483	22	2.0	22	85	0	59	53	6	16	23	1.67
37934450--37934508	22	2.7	22	78	2	57	57	11	15	15	1.65
37934478--37934508	10	2.9	11	90	9	55	64	16	9	9	1.48
37935298--37935357	27	2.3	26	82	5	68	31	1	1	65	1.13
37941815--37941868	24	2.2	24	87	6	74	14	3	42	38	1.64
37951101--37951131	2	15.5	2	100	0	62	51	0	0	48	1.00
37951160--37951216	27	2.0	29	83	10	73	29	1	1	66	1.12
37951180--37951227	23	2.1	23	84	3	62	33	0	4	62	1.14
37951834--37951880	21	2.3	19	80	20	51	68	4	4	23	1.26
37955499--37955551	24	2.2	25	86	3	72	22	1	3	71	1.12
37955529--37955566	18	2.1	19	85	5	51	31	2	0	65	1.06
37961388--37961434	23	2.0	23	95	0	85	46	8	23	21	1.78
37970396--37970427	14	2.4	14	94	5	57	37	0	9	53	1.34
37970685--37970786	34	3.0	34	85	1	141	45	1	34	18	1.61
37970719--37970776	17	3.4	17	75	17	66	41	1	36	20	1.63
37974509--37974549	9	4.3	9	87	9	55	53	0	2	43	1.13
37976177--37976270	34	2.8	34	83	0	125	46	1	31	20	1.57
37976180--37976282	17	6.2	17	70	14	72	45	0	32	21	1.58
37977161--37977426	87	3.1	86	79	3	284	37	7	15	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37989759--37989808	24	2.1	24	85	7	66	44	4	6	46	1.47
37993266--37993433	89	1.9	89	97	0	318	31	14	30	23	1.94
37997700--37998702	332	3.0	332	99	0	1997	34	11	19	33	1.89
38006686--38006719	15	2.3	15	90	5	52	47	0	5	47	1.26
38015272--38015357	30	2.9	30	83	0	118	34	19	15	30	1.93
38015838--38015869	5	6.4	5	100	0	64	18	21	18	40	1.91
38027530--38027688	30	5.4	29	66	17	78	34	4	28	32	1.77
38027676--38027906	29	7.9	29	71	12	163	34	4	29	31	1.78
38027523--38027746	116	1.9	115	80	6	256	33	5	30	30	1.80
38027683--38027830	59	2.5	59	70	17	135	34	6	30	29	1.82
38027610--38027920	29	10.7	29	69	21	106	33	5	29	31	1.79
38027610--38027906	88	3.4	88	86	6	399	33	5	30	31	1.79
38029759--38029825	6	11.7	6	78	9	77	53	2	0	43	1.16
38029750--38029804	11	4.9	11	79	16	60	52	3	0	43	1.18
38029750--38029832	17	4.9	17	86	0	103	54	3	0	42	1.18
38030144--38030494	38	9.4	37	66	19	140	31	18	15	34	1.92
38030135--38030600	76	6.2	75	88	4	611	31	18	15	34	1.93
38030296--38030545	38	6.9	33	67	27	127	32	19	15	33	1.93
38030462--38030586	38	3.1	43	63	25	101	35	18	16	29	1.93
38030481--38030600	38	3.2	38	68	21	115	31	19	15	33	1.93
38040921--38041098	29	6.1	28	67	22	84	32	3	30	33	1.76
38040907--38041039	58	2.3	58	89	2	196	33	3	29	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38040941--38041216	29	9.5	29	70	20	168	35	3	28	32	1.76
38040941--38041229	88	3.3	88	87	3	399	34	4	29	31	1.77
38043098--38043164	6	11.7	6	78	9	77	53	2	0	43	1.16
38043089--38043143	11	4.9	11	79	16	60	52	3	0	43	1.18
38043089--38043171	17	4.9	17	86	0	103	54	3	0	42	1.18
38043636--38043686	20	2.5	20	84	9	68	68	0	3	27	1.07
38043636--38043678	11	4.0	10	82	11	50	72	0	2	25	0.97
38045447--38045494	24	2.0	23	88	11	71	43	2	2	52	1.24
38053015--38053055	19	2.2	19	90	0	64	51	4	0	43	1.23
38071551--38071601	20	2.5	20	87	0	66	39	13	5	41	1.69
38080455--38080504	20	2.5	19	81	9	64	44	4	10	42	1.56
38081607--38081654	19	2.5	19	86	0	60	16	14	31	37	1.89
38085278--38085454	86	2.1	86	97	0	336	49	20	6	23	1.73
38086422--38086474	21	2.4	22	87	12	74	39	1	0	58	1.09
38113415--38113442	6	4.7	6	100	0	56	35	50	0	14	1.43
38118638--38118723	30	2.8	30	80	1	91	40	10	5	43	1.63
38118627--38118722	31	3.1	30	80	3	102	39	11	5	43	1.63
38118669--38118740	31	2.4	31	81	6	85	44	11	4	40	1.59
38122145--38122187	17	2.5	16	82	14	50	25	23	0	51	1.49
38127840--38127889	21	2.5	19	78	15	57	48	0	2	50	1.12
38129097--38129216	53	2.3	53	84	5	145	34	32	15	18	1.92
38129188--38129278	33	3.0	28	76	17	92	28	34	19	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38129211--38129282	33	2.2	33	92	0	117	30	37	16	15	1.90
38131979--38132022	23	1.9	23	86	9	63	34	2	0	63	1.07
38133044--38133077	17	2.0	17	94	0	59	44	0	0	55	0.99
38133835--38133872	16	2.3	17	90	4	60	42	0	0	57	0.98
38142932--38143203	135	2.0	134	82	6	325	35	14	31	18	1.91
38163149--38163268	58	2.1	58	88	3	179	47	18	0	34	1.49
38173709--38173742	18	1.9	18	94	5	61	32	2	0	64	1.08
38177475--38177531	25	2.3	26	84	6	82	28	19	36	15	1.92
38184818--38184856	17	2.3	17	90	0	60	15	12	25	46	1.81
38185476--38185517	15	2.8	15	92	0	66	50	21	9	19	1.75
38185978--38186021	13	3.2	13	78	12	52	36	0	2	61	1.09
38186092--38186143	20	2.6	20	80	17	63	63	5	3	26	1.34
38190196--38190226	16	1.9	16	93	0	53	48	9	6	35	1.62
38194842--38194954	20	5.8	20	68	15	74	50	0	5	44	1.24
38194987--38195069	17	4.7	17	70	19	55	37	6	1	55	1.32
38195318--38195362	6	7.7	6	85	5	65	46	2	2	48	1.26
38195302--38195360	12	5.0	11	75	22	57	42	3	1	52	1.28
38195302--38195362	18	3.4	17	86	6	77	42	3	1	52	1.27
38195374--38195445	26	2.7	27	75	16	78	45	25	8	20	1.79
38197194--38197410	28	7.5	27	74	15	145	37	24	3	34	1.72
38197194--38197410	29	7.5	28	75	13	174	37	24	3	34	1.72
38197194--38197413	59	3.8	57	79	8	153	37	24	3	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38197367--38197498	58	2.3	59	80	9	137	35	25	3	35	1.74
38204447--38204607	50	3.2	49	64	13	121	40	20	23	15	1.91
38204407--38204727	100	3.2	100	83	1	376	39	19	24	15	1.91
38204740--38204853	49	2.3	48	80	10	142	39	23	25	11	1.88
38205109--38205182	39	1.9	38	86	8	105	27	25	22	24	2.00
38205263--38205535	120	2.3	120	92	0	456	36	18	21	22	1.95
38205501--38205835	152	2.2	156	85	4	446	34	21	22	21	1.97
38205653--38206041	206	1.9	206	95	0	706	34	20	23	21	1.96
38206411--38206436	5	5.2	5	100	0	52	19	0	42	38	1.51
38206807--38206919	23	5.0	23	80	3	113	40	23	23	11	1.87
38206807--38206919	46	2.5	44	77	11	129	40	23	23	11	1.87
38206782--38206919	23	5.9	23	78	5	109	40	22	24	12	1.88
38214709--38214869	23	6.9	23	83	5	164	42	23	23	10	1.85
38216882--38216966	17	4.8	17	79	13	91	44	2	2	50	1.27
38216882--38216966	36	2.4	36	80	11	95	44	2	2	50	1.27
38216882--38216947	6	11.0	6	78	12	73	43	3	1	51	1.26
38217632--38217674	19	2.3	18	88	4	59	51	0	2	46	1.13
38218803--38219000	30	6.7	29	80	7	204	37	25	2	34	1.68
38218803--38219027	59	3.8	59	81	6	253	36	25	3	34	1.72
38219040--38219101	29	2.1	29	82	5	72	33	29	11	25	1.91
38220729--38220753	12	2.1	12	100	0	50	56	0	0	44	0.99
38234542--38234575	3	11.3	3	87	0	50	5	35	0	58	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38234542--38234576	15	2.3	15	100	0	70	8	34	0	57	1.29
38235498--38235536	15	2.4	16	87	8	53	35	0	0	64	0.94
38236816--38236871	21	2.7	21	81	10	62	35	3	1	58	1.26
38236838--38236876	21	2.0	21	85	10	55	41	2	0	56	1.13
38236981--38237019	21	2.0	21	85	10	55	41	2	0	56	1.13
38236824--38237113	141	2.0	142	97	1	555	35	9	6	47	1.63
38239552--38239588	5	7.4	5	100	0	74	81	0	0	18	0.70
38239678--38239714	19	1.9	19	89	10	58	43	0	29	27	1.55
38243716--38243756	17	2.4	17	95	4	73	17	19	17	46	1.85
38252930--38252962	17	2.0	17	94	5	59	72	0	0	27	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163