genome.fa.s8.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  161  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46086252--46086284	16	2.1	17	88	11	52	63	0	0	36	0.95
46086584--46086649	26	2.5	26	73	9	62	27	6	0	66	1.15
46087453--46087487	18	1.9	18	88	11	54	54	5	0	40	1.24
46089232--46089298	31	2.2	31	88	0	98	44	2	10	41	1.54
46089232--46089316	31	2.8	31	83	3	93	42	2	11	43	1.54
46092072--46092097	2	13.0	2	100	0	52	50	0	0	50	1.00
46104973--46105016	18	2.6	16	76	16	52	18	6	6	68	1.35
46106374--46106406	9	3.8	9	96	4	59	66	0	0	33	0.92
46113179--46113247	35	2.0	35	88	0	102	28	10	17	43	1.81
46113193--46113266	35	2.1	35	82	0	85	29	8	20	41	1.81
46123307--46123350	22	2.0	22	100	0	88	36	9	4	50	1.55
46124175--46125062	228	3.9	228	85	1	1019	28	25	25	20	1.99
46127377--46127429	2	26.5	2	92	7	90	50	1	0	47	1.12
46129695--46129736	20	2.1	20	82	8	50	21	4	2	71	1.16
46130012--46130063	25	2.1	25	85	0	68	32	5	9	51	1.58
46131516--46131574	31	1.9	30	86	3	82	52	1	0	45	1.10
46143444--46143490	12	4.2	12	78	15	55	0	17	44	38	1.48
46154877--46154967	44	2.1	44	87	4	130	40	5	2	51	1.37
46159580--46159624	16	2.7	17	82	3	56	28	0	2	68	1.01
46161310--46161346	4	9.2	4	87	0	56	2	21	27	48	1.63
46163653--46163680	14	2.0	14	100	0	56	28	28	0	42	1.56
46164089--46164137	12	4.1	12	82	7	55	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46164090--46164140	25	2.1	25	85	3	68	50	0	0	49	1.00
46165772--46165813	18	2.3	18	84	8	50	47	4	33	14	1.65
46166306--46166594	158	1.8	158	93	0	506	24	21	24	30	1.99
46166309--46166629	158	2.0	158	89	2	484	24	22	23	29	1.99
46168644--46168683	20	2.0	20	90	0	62	22	22	15	40	1.91
46173126--46173176	17	3.2	16	78	8	59	31	1	11	54	1.47
46189595--46189636	2	21.0	2	100	0	84	0	0	50	50	1.00
46194894--46194925	9	3.4	10	83	16	50	65	0	0	34	0.93
46194898--46194931	18	1.9	17	94	5	59	67	0	0	32	0.91
46203280--46203340	13	4.8	13	74	11	56	36	18	4	40	1.72
46203280--46203340	25	2.4	26	75	8	72	36	18	4	40	1.72
46205874--46205914	19	2.2	20	91	8	68	31	7	0	60	1.24
46208834--46208973	51	2.7	52	86	6	185	53	1	2	42	1.24
46227442--46228339	75	12.0	75	79	7	844	25	19	25	29	1.98
46227474--46228307	294	2.8	295	83	5	961	25	19	25	29	1.99
46233533--46233588	28	2.0	28	82	3	67	39	1	7	51	1.40
46234872--46234900	7	4.1	7	100	0	58	41	0	0	58	0.98
46236437--46236478	22	1.9	22	85	9	59	54	14	4	26	1.59
46245716--46245855	59	2.4	58	80	4	154	42	15	20	21	1.88
46250537--46250618	10	9.0	9	75	16	62	54	0	0	45	0.99
46251444--46251488	21	2.0	23	83	8	58	48	2	0	48	1.13
46260601--46260668	30	2.3	30	82	7	77	47	7	5	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46262179--46262402	43	5.1	44	81	5	215	28	26	17	27	1.98
46262723--46262762	21	1.9	21	84	0	53	2	42	20	35	1.65
46263548--46263807	41	6.3	40	83	6	292	21	28	19	31	1.97
46263817--46263931	40	2.9	40	78	0	122	20	18	19	42	1.89
46268826--46268867	17	2.4	17	88	4	57	21	28	2	47	1.63
46268806--46268853	24	2.0	24	83	0	60	18	35	2	43	1.62
46270061--46270254	97	2.0	97	91	0	316	36	18	19	26	1.94
46270530--46270760	30	7.9	29	74	8	191	35	2	24	36	1.70
46270561--46270760	59	3.4	60	85	1	208	36	3	24	36	1.71
46271856--46271889	13	2.8	12	86	8	50	41	0	0	58	0.98
46271855--46271907	19	2.8	19	80	5	63	39	0	1	58	1.09
46272555--46272598	17	2.6	17	82	7	54	54	0	4	40	1.21
46287711--46287779	31	2.2	31	84	0	84	33	8	11	46	1.71
46297972--46298078	52	2.0	52	82	8	128	42	2	1	53	1.26
46298548--46298650	51	2.1	48	78	13	113	44	28	14	12	1.82
46324554--46324593	20	1.9	21	85	10	55	55	0	0	45	0.99
46324569--46324652	27	2.9	28	81	10	80	46	1	3	48	1.27
46328860--46328905	19	2.5	19	75	10	51	58	0	2	39	1.10
46336926--46336963	4	9.5	4	94	0	67	23	47	0	28	1.52
46340738--46340811	30	2.5	30	80	4	78	44	6	5	43	1.53
46343306--46343330	12	2.1	12	100	0	50	24	0	0	76	0.80
46346753--46346837	23	3.7	24	83	10	97	38	18	12	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46349122--46349157	17	2.2	16	90	5	54	38	8	16	36	1.79
46351484--46351514	5	6.2	5	96	0	53	64	35	0	0	0.94
46363121--46363188	32	2.1	32	97	0	127	52	14	2	29	1.56
46369188--46369226	19	1.9	20	85	15	53	43	23	17	15	1.87
46372644--46372672	2	14.5	2	100	0	58	0	0	48	51	1.00
46374382--46374421	17	2.3	18	83	12	57	10	7	25	57	1.57
46378379--46378531	54	2.6	57	85	12	179	45	1	0	52	1.17
46379017--46379058	14	3.1	14	77	16	52	50	2	0	47	1.14
46383981--46384029	25	1.9	26	91	4	82	30	6	4	59	1.41
46388010--46388049	18	2.2	19	86	4	55	40	35	0	25	1.56
46388144--46388212	34	2.1	33	81	10	79	62	5	2	28	1.33
46388707--46388756	18	2.8	17	79	11	55	6	12	4	78	1.08
46396156--46396196	16	2.6	16	78	21	50	65	0	2	31	1.05
46410732--46410773	21	2.0	21	85	0	57	38	2	40	19	1.64
46410802--46411047	96	2.6	96	78	0	294	19	24	16	39	1.91
46411047--46411539	135	3.8	131	80	11	505	18	24	16	39	1.91
46411334--46411563	123	1.9	123	88	3	347	17	27	17	37	1.92
46412772--46412802	3	10.3	3	100	0	62	32	0	0	67	0.91
46412992--46413108	53	2.2	53	86	3	155	44	5	2	47	1.41
46413819--46414107	43	6.8	43	87	3	406	20	31	20	26	1.97
46414400--46414442	21	2.0	21	90	0	68	0	44	23	32	1.54
46414437--46414585	66	2.3	66	92	0	253	16	24	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46421238--46421270	16	2.1	17	88	11	52	30	6	0	63	1.18
46422354--46422692	41	8.3	40	88	4	423	21	28	23	27	1.99
46422354--46422692	81	4.2	82	88	3	454	21	28	23	27	1.99
46422354--46422711	122	2.9	120	86	6	443	21	27	24	26	1.99
46425542--46425680	29	4.7	30	72	15	101	35	4	25	34	1.76
46425542--46425770	59	3.9	59	87	3	311	34	5	25	34	1.79
46425540--46425703	29	5.6	30	69	21	91	33	6	26	34	1.81
46425602--46425703	28	3.6	27	74	17	89	32	4	27	35	1.78
46425451--46425774	117	2.7	117	84	4	384	35	5	26	32	1.79
46426787--46426851	3	21.0	3	83	12	78	36	3	0	60	1.13
46427562--46427632	6	12.0	6	77	14	67	50	4	1	43	1.30
46427561--46427606	23	2.0	24	91	4	76	50	2	2	45	1.26
46427568--46427631	17	4.1	16	75	17	62	51	4	1	42	1.32
46427562--46427626	30	2.2	30	88	2	96	50	3	1	44	1.26
46427564--46427632	36	1.9	36	84	0	93	50	4	1	43	1.30
46428440--46428496	22	2.5	23	77	11	64	38	1	0	59	1.08
46434769--46435178	135	3.1	135	77	9	452	18	25	16	39	1.91
46435057--46435134	39	2.0	39	87	5	113	15	25	16	42	1.87
46434910--46435148	123	1.9	123	87	0	352	19	26	15	38	1.92
46436530--46436650	56	2.2	55	84	5	149	41	8	4	45	1.56
46436773--46436837	29	2.2	30	86	2	87	49	6	9	35	1.60
46453372--46453419	22	2.2	22	84	0	60	22	10	2	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46465346--46465408	32	2.0	32	81	6	74	34	17	4	42	1.70
46467570--46467604	16	2.1	18	89	10	56	51	0	0	48	1.00
46471089--46471128	2	21.0	2	90	10	66	50	0	0	50	1.00
46471543--46471589	19	2.4	20	79	13	53	46	14	2	36	1.57
46484318--46484349	2	16.0	2	100	0	64	50	0	0	50	1.00
46487027--46487069	2	22.0	2	95	4	79	51	0	0	48	1.00
46493106--46493136	16	2.0	15	93	6	53	25	0	3	70	1.02
46493820--46493891	30	2.4	31	85	2	92	45	18	15	20	1.85
46495931--46496044	23	5.0	23	81	8	126	40	24	24	10	1.87
46495931--46496044	46	2.5	45	79	12	142	40	24	24	10	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163