genome.fa.s8.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  42  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10731301--10731355	6	9.7	6	78	11	62	43	3	1	50	1.30
10731990--10732022	17	1.9	17	93	0	57	57	3	0	39	1.14
10733022--10733421	30	13.6	30	89	5	577	37	24	3	35	1.73
10733280--10733503	30	7.6	29	75	10	122	34	25	3	36	1.74
10733401--10733541	59	2.4	58	88	4	194	31	30	4	33	1.77
10745445--10746703	38	35.6	38	73	17	989	33	17	21	27	1.96
10745555--10746353	69	11.6	68	83	9	839	33	17	21	27	1.95
10745435--10746569	488	2.3	491	96	1	2147	33	17	21	27	1.96
10746353--10746778	68	6.0	68	82	9	453	34	17	20	27	1.95
10746419--10746703	75	3.8	77	83	8	344	33	18	20	28	1.96
10746571--10746778	69	3.0	69	83	6	230	35	17	19	27	1.94
10747116--10747216	6	17.0	6	74	17	77	49	0	1	48	1.12
10747120--10747184	17	4.1	15	81	15	78	43	0	3	53	1.16
10747116--10747205	42	2.2	42	84	4	112	46	0	2	51	1.13
10747124--10747187	31	2.1	31	91	5	103	43	0	3	53	1.16
10747106--10747186	11	7.5	11	72	19	64	41	0	3	54	1.18
10747374--10747432	20	3.0	20	87	5	84	18	44	16	20	1.87
10747912--10748009	9	10.3	9	72	18	74	50	4	6	39	1.46
10747915--10747978	21	3.1	21	81	2	67	46	3	6	43	1.44
10747912--10747982	30	2.4	29	97	2	133	49	2	5	42	1.41
10748257--10748318	15	4.3	15	79	18	69	70	1	25	1	1.05
10748993--10749475	30	16.4	30	82	5	531	39	22	4	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10756878--10756919	22	1.9	22	95	0	75	52	16	11	19	1.74
10757680--10757713	17	2.0	17	88	0	50	47	5	23	23	1.73
10758139--10758298	59	2.7	60	82	5	191	23	16	9	50	1.75
10758148--10758298	61	2.5	59	83	8	180	22	15	9	51	1.73
10763605--10763657	11	4.9	11	77	13	56	20	0	1	77	0.87
10763608--10763657	16	3.2	15	85	2	64	20	0	2	78	0.86
10763607--10763650	5	8.8	5	87	7	63	18	0	2	79	0.83
10763605--10763674	21	3.2	21	79	6	77	21	2	2	72	1.10
10763771--10763920	4	36.8	4	70	17	87	21	4	4	70	1.23
10763771--10763873	23	4.9	23	74	19	66	22	2	4	69	1.20
10763890--10763933	20	2.1	20	87	8	61	20	4	4	70	1.23
10763829--10763970	60	2.3	60	79	10	162	19	7	4	69	1.28
10770399--10770430	7	4.9	7	96	3	50	15	28	0	56	1.40
10772585--10772745	4	40.0	4	70	21	88	21	2	4	71	1.15
10772585--10772686	11	8.7	11	74	15	89	22	0	3	73	0.99
10772599--10772745	11	14.0	10	68	22	63	21	2	4	71	1.17
10772590--10772745	27	5.9	25	72	17	88	21	2	4	71	1.15
10772711--10772763	24	2.3	22	81	12	61	20	3	7	67	1.31
10775463--10775571	57	1.9	57	90	3	175	32	5	16	45	1.70
10782213--10782257	16	2.9	15	80	9	54	20	2	4	73	1.11
10782213--10782257	5	8.6	5	82	7	54	20	2	4	73	1.11
10782239--10782311	30	2.4	30	76	13	71	20	9	5	64	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10782379--10782532	4	37.5	4	71	18	77	20	3	5	71	1.19
10782424--10782465	11	3.6	12	81	12	52	16	2	7	73	1.15
10783844--10783975	55	2.4	55	84	2	176	28	9	14	48	1.74
10784329--10784460	55	2.4	55	84	2	158	48	14	7	29	1.71
10785842--10785966	59	2.1	58	84	11	166	40	17	11	31	1.85
10786648--10786692	21	2.1	21	100	0	90	20	33	15	31	1.93
10790358--10790396	13	2.9	13	88	3	51	79	2	10	7	1.02
10791158--10791334	60	3.0	60	89	2	259	24	18	11	44	1.84
10791168--10791312	31	4.9	30	72	15	115	23	18	12	45	1.83
10791557--10791674	31	3.8	31	73	22	104	46	12	16	23	1.82
10791488--10791652	88	1.9	89	84	7	228	46	13	16	23	1.83
10794072--10794163	41	2.3	41	83	14	129	52	0	0	47	1.00
10795986--10796032	3	15.3	3	82	4	58	34	0	38	27	1.57
10799754--10799795	6	6.8	6	86	2	57	16	26	0	57	1.40
10800551--10800583	17	2.1	16	88	11	50	36	39	0	24	1.56
10801651--10801691	16	2.6	16	78	17	50	29	0	4	65	1.13
10802568--10802752	51	3.6	51	86	1	262	30	14	24	29	1.95
10806705--10806782	31	2.5	31	87	4	122	41	8	21	28	1.83
10810009--10810071	30	2.2	30	91	5	103	52	0	0	47	1.00
10810013--10810078	30	2.2	30	84	10	91	50	0	0	50	1.00
10812372--10813578	603	2.0	603	99	0	2369	34	19	10	35	1.85
10814657--10814696	13	3.1	13	88	0	53	10	20	2	67	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10826610--10826661	21	2.5	21	93	0	95	9	28	3	57	1.48
10836541--10836594	21	2.6	21	91	5	83	31	29	11	27	1.91
10840068--10840138	24	3.0	24	82	0	97	30	22	22	23	1.99
10846537--10846562	11	2.4	11	100	0	52	34	0	0	65	0.93
10846538--10846592	19	3.0	18	76	10	58	27	5	1	65	1.25
10846669--10846707	5	7.6	5	82	5	51	20	2	2	74	1.06
10846677--10846720	16	2.7	16	82	3	52	20	6	2	70	1.21
10846696--10846763	30	2.3	30	82	12	79	19	10	5	64	1.44
10849498--10849619	54	2.2	55	83	1	147	28	9	13	49	1.72
10850935--10851013	34	2.3	34	88	0	113	46	18	12	21	1.82
10851760--10851802	11	3.8	11	81	3	50	46	0	0	53	1.00
10854158--10854189	2	16.5	2	93	6	57	50	0	0	50	1.00
10858281--10858413	55	2.4	56	87	3	182	47	14	9	29	1.74
10865280--10865412	55	2.4	56	87	3	182	47	14	9	29	1.74
10868416--10868548	55	2.4	56	87	3	182	47	14	9	29	1.74
10871542--10871674	55	2.4	56	87	3	182	47	14	9	29	1.74
10872429--10872467	19	2.1	19	85	9	53	46	0	0	53	1.00
10875733--10875864	53	2.4	55	86	6	171	46	14	9	29	1.75
10880840--10880943	28	3.8	26	69	14	75	28	7	32	30	1.85
10880910--10881098	30	6.3	30	74	15	115	33	3	28	34	1.75
10880866--10881006	59	2.5	57	86	5	187	31	5	31	31	1.81
10880962--10881098	30	4.6	30	81	11	140	36	2	26	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10881570--10881624	29	1.9	29	85	10	78	1	41	0	56	1.10
10882977--10883028	6	8.8	6	76	4	52	55	1	1	40	1.22
10882977--10883028	12	4.4	12	85	4	70	55	1	1	40	1.22
10882990--10883024	11	3.1	11	87	4	52	57	0	2	40	1.14
10883369--10884376	93	10.9	93	91	4	867	32	17	16	33	1.92
10883370--10884001	92	6.8	92	92	2	948	29	17	19	33	1.95
10884017--10884371	40	7.5	51	67	26	253	38	16	10	34	1.83
10884409--10884557	50	3.0	50	72	14	144	14	27	22	36	1.92
10884371--10884517	50	2.9	50	69	12	120	12	25	21	40	1.88
10885864--10885915	23	2.2	23	86	6	68	1	9	5	82	0.90
10885848--10885917	22	3.1	21	76	11	68	1	15	4	78	0.98
10886762--10886808	10	4.8	10	78	5	60	10	2	8	78	1.04
10886762--10886808	19	2.4	20	82	3	60	10	2	8	78	1.04
10890392--10890454	28	2.2	28	83	5	74	26	11	28	33	1.91
10890406--10890783	30	12.9	28	66	11	96	35	5	28	29	1.81
10890410--10890753	29	11.7	29	66	14	109	36	5	28	29	1.80
10890478--10890749	59	4.6	59	88	0	364	35	5	29	29	1.79
10890410--10890749	177	1.9	177	86	2	477	35	5	28	30	1.81
10890705--10890840	30	4.5	30	84	10	163	36	2	25	34	1.71
10892712--10892763	12	4.4	12	80	4	61	57	1	1	38	1.21
10894659--10894788	53	2.4	55	88	2	183	47	14	7	30	1.72
10895620--10895681	11	5.7	12	79	12	55	58	1	1	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10895633--10895681	11	4.6	11	80	14	59	61	0	2	36	1.08
10896009--10897018	92	10.9	93	90	4	871	32	17	16	33	1.92
10896014--10896645	92	6.8	92	92	2	939	29	17	20	33	1.95
10896628--10896961	40	7.4	40	68	26	181	38	16	10	34	1.83
10896460--10897015	186	3.0	183	87	6	730	35	16	12	34	1.87
10897050--10897199	50	3.0	50	71	14	137	13	27	23	36	1.92
10897013--10897143	51	2.6	51	73	12	126	9	25	22	41	1.84
10898507--10898558	23	2.2	23	86	6	68	1	9	5	82	0.90
10898491--10898560	22	3.1	21	76	11	68	1	15	4	78	0.98
10899404--10899449	10	4.6	10	78	10	58	10	2	8	78	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163