genome.fa.s8.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  152  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41851251--41851398	57	2.6	58	91	2	226	35	2	29	32	1.72
41851304--41851400	29	3.4	29	70	23	87	32	2	32	31	1.70
41851251--41851410	58	2.7	58	87	2	196	36	3	26	33	1.73
41851383--41851442	31	1.9	31	86	0	84	43	3	20	33	1.68
41851384--41851477	31	3.1	29	77	10	82	39	6	21	32	1.79
41853438--41853474	17	2.2	17	90	0	56	37	0	2	59	1.12
41861430--41861491	26	2.4	27	76	15	69	48	3	0	48	1.17
41868950--41869058	23	4.7	23	83	0	146	42	23	19	14	1.88
41868947--41869058	46	2.4	46	90	0	170	43	23	18	14	1.86
41883978--41884004	1	27.0	1	100	0	54	0	0	100	0	0.00
41902413--41902439	13	2.1	13	100	0	54	14	7	0	77	0.97
41903983--41904021	18	2.2	18	100	0	78	43	23	0	33	1.54
41905440--41905489	15	3.4	14	75	8	55	60	6	2	32	1.32
41919092--41919139	26	1.9	26	83	8	64	56	0	0	43	0.99
41920073--41920273	39	5.2	39	69	17	116	36	0	4	57	1.27
41920070--41920125	20	2.8	20	86	2	78	35	0	3	60	1.14
41920188--41920271	20	4.2	20	66	11	57	39	1	3	55	1.25
41920211--41920290	39	2.1	38	81	13	92	35	0	3	61	1.14
41925048--41925088	20	2.0	22	85	9	59	31	0	4	63	1.15
41925071--41925122	26	2.0	25	85	3	68	25	0	1	73	0.94
41947206--41947263	2	32.0	2	80	19	74	48	0	0	51	1.00
41947203--41947262	5	11.6	5	87	8	50	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41954133--41954194	20	3.1	20	90	0	88	46	4	19	29	1.70
41955687--41955743	18	3.1	18	75	14	53	50	5	0	43	1.24
41955717--41955766	26	1.9	26	84	8	66	48	8	2	42	1.44
41956573--41956631	31	1.9	31	86	6	84	30	11	25	32	1.92
41956789--41956908	31	4.0	31	74	20	103	26	15	11	46	1.79
41957886--41957911	7	3.7	7	100	0	52	46	11	0	42	1.40
41964993--41965019	3	9.0	3	100	0	54	33	0	0	66	0.92
41971220--41971249	11	2.8	11	95	5	53	93	0	6	0	0.35
41971220--41971250	16	1.9	16	93	0	53	90	0	9	0	0.46
41973323--41973370	24	2.0	24	84	8	62	52	2	22	22	1.58
41981515--41981590	34	2.2	34	97	0	143	23	17	18	40	1.91
41981686--41981731	24	1.9	24	90	0	74	32	13	15	39	1.85
41987490--41987519	2	15.0	2	92	0	51	53	0	46	0	1.00
41987748--41987850	34	3.0	34	88	1	152	45	1	34	17	1.60
41987750--41987852	17	6.2	17	72	14	81	43	1	34	19	1.62
41993178--41993246	34	2.0	35	86	8	97	55	1	26	17	1.51
41997313--41997350	18	2.1	18	90	9	60	23	10	15	50	1.75
42002096--42002167	14	4.9	14	75	18	65	65	2	1	30	1.15
42011563--42011621	28	2.1	29	84	9	77	33	1	1	62	1.15
42011568--42011631	28	2.3	28	78	10	69	35	0	1	62	1.05
42016844--42016920	2	38.5	2	100	0	154	50	0	0	49	1.00
42025785--42025830	20	2.2	20	85	11	58	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42028045--42028260	102	2.1	102	97	0	405	29	23	22	25	1.99
42030052--42030087	10	3.5	10	96	3	63	69	2	11	16	1.29
42030588--42030635	24	1.9	26	84	16	66	45	0	22	31	1.53
42030712--42030789	24	3.2	24	83	3	102	14	30	14	41	1.85
42033079--42033493	216	1.9	216	85	3	568	24	25	15	35	1.94
42036884--42036930	24	2.0	24	86	0	67	53	12	8	25	1.67
42040240--42040264	2	12.5	2	100	0	50	0	48	0	52	1.00
42042940--42043213	86	3.2	86	99	0	539	46	9	8	35	1.68
42043261--42043305	23	2.0	22	87	8	65	46	24	11	17	1.81
42045290--42045330	17	2.4	17	91	0	64	36	0	4	58	1.20
42047014--42047080	27	2.4	27	85	2	80	40	29	1	28	1.66
42047061--42047317	87	2.9	86	84	6	302	34	25	3	36	1.73
42046986--42047289	29	10.5	29	77	6	260	35	25	2	35	1.72
42046986--42047336	29	12.1	29	75	7	223	35	26	3	35	1.72
42047631--42047824	97	2.0	97	92	0	325	28	20	15	35	1.94
42048569--42048607	6	6.5	6	100	0	78	51	0	15	33	1.44
42050852--42050888	16	2.3	16	90	9	58	59	0	0	40	0.97
42078701--42078729	13	2.1	14	93	6	51	62	3	0	34	1.12
42082078--42082289	43	5.0	43	74	9	164	28	16	25	29	1.97
42086924--42086979	26	2.2	26	100	0	112	46	10	12	30	1.76
42092163--42092198	2	18.0	2	100	0	72	50	0	0	50	1.00
42093008--42093061	2	27.0	2	100	0	108	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42095362--42095398	11	2.9	13	84	15	51	48	8	0	43	1.32
42099234--42099272	20	1.9	21	85	15	55	58	5	0	35	1.20
42104503--42104544	22	2.0	21	90	4	66	59	0	2	38	1.10
42113418--42113458	19	2.1	20	86	4	57	53	0	2	43	1.13
42114312--42114412	41	2.5	41	93	1	168	19	25	26	27	1.99
42114264--42114457	105	1.8	107	84	2	266	21	26	25	26	2.00
42114542--42114566	12	2.1	12	100	0	50	8	24	24	44	1.80
42116230--42116322	23	4.0	23	81	4	107	40	17	10	31	1.83
42116426--42116470	23	1.9	24	90	4	74	46	13	17	22	1.83
42116427--42116473	12	4.0	12	84	13	62	42	14	17	25	1.87
42119525--42119581	28	2.0	28	83	12	73	33	3	0	63	1.12
42121533--42121561	12	2.4	12	100	0	58	34	41	24	0	1.55
42134959--42134987	13	2.2	13	100	0	58	6	10	62	20	1.50
42138029--42138063	7	5.0	7	100	0	70	57	28	14	0	1.38
42138959--42139003	19	2.4	19	81	7	56	62	2	6	28	1.33
42141677--42141713	18	2.1	18	90	10	58	48	2	0	48	1.15
42142989--42143058	31	2.3	31	84	0	86	37	4	2	55	1.34
42145382--42145422	3	13.7	3	94	0	73	65	2	31	0	1.05
42158821--42158920	36	2.8	36	87	0	155	28	23	21	28	1.99
42158947--42159018	18	3.9	19	77	12	78	33	22	16	27	1.95
42170872--42170924	26	2.0	27	85	10	74	28	13	11	47	1.77
42172005--42172064	24	2.8	20	72	16	50	66	13	0	20	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42186472--42186507	18	1.9	19	88	5	56	47	5	16	30	1.70
42192132--42192177	16	3.0	16	78	18	53	56	0	0	43	0.99
42192597--42192650	8	6.8	8	93	0	90	46	24	12	16	1.82
42194499--42194546	18	2.8	17	87	6	69	41	2	2	54	1.24
42197028--42197097	6	12.0	6	75	6	63	54	4	0	41	1.20
42197549--42197762	49	4.4	49	74	7	175	18	25	16	39	1.92
42197627--42197766	49	2.8	50	80	6	176	19	25	15	40	1.91
42198900--42199124	50	4.5	50	75	11	219	12	26	20	40	1.88
42198900--42199123	100	2.2	100	94	0	385	12	26	20	40	1.88
42203005--42203155	71	2.1	70	88	9	218	13	21	19	45	1.84
42202979--42203135	23	6.5	25	83	7	150	12	22	21	43	1.86
42205924--42205952	6	5.0	6	95	4	51	68	0	0	31	0.89
42216342--42216404	31	2.0	34	82	14	82	34	0	4	60	1.18
42217165--42217194	16	1.9	16	93	6	53	30	6	3	60	1.39
42219824--42219880	25	2.3	26	85	11	75	63	0	0	36	0.95
42221047--42221082	19	1.9	19	88	5	56	30	11	2	55	1.49
42222817--42222846	4	7.5	4	100	0	60	26	0	23	50	1.50
42223815--42223885	34	2.1	34	94	0	124	35	9	15	39	1.81
42225165--42225206	6	7.0	6	97	0	75	14	33	33	19	1.91
42240097--42240321	9	24.3	9	66	21	92	64	0	4	30	1.18
42240233--42240322	11	9.0	10	70	21	55	67	1	2	28	1.09
42240246--42240316	21	3.3	22	77	16	69	66	1	2	29	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42240257--42240325	33	2.1	32	84	7	86	72	0	2	24	0.98
42240412--42240463	17	3.0	17	78	13	61	25	0	3	71	1.03
42240419--42240481	31	2.0	32	87	9	94	23	1	1	73	1.01
42240424--42240493	31	2.2	33	82	7	90	22	2	2	71	1.13
42240508--42240546	20	2.0	20	85	10	53	30	5	2	61	1.31
42240530--42240590	22	2.8	21	75	7	59	24	4	8	62	1.43
42243252--42243278	14	1.9	14	100	0	54	66	0	3	29	1.09
42243570--42243628	24	2.5	24	78	13	68	28	1	0	69	0.98
42243589--42243631	22	1.9	23	85	4	61	30	0	0	69	0.88
42246356--42246394	20	2.0	20	85	10	53	46	7	12	33	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163