genome.fa.s8.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  47  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11619523--11620163	200	3.2	200	90	1	935	19	24	21	34	1.97
11632325--11632734	59	7.0	57	85	3	387	31	3	31	33	1.75
11632389--11632521	29	4.5	30	74	22	104	35	2	27	35	1.69
11632418--11632730	29	10.7	29	77	16	265	31	3	30	33	1.74
11633151--11633210	21	2.9	19	83	9	66	45	6	1	46	1.39
11633149--11633210	20	3.2	18	75	18	54	45	6	1	46	1.38
11633962--11634002	17	2.4	18	76	12	50	56	7	0	36	1.27
11639752--11639808	23	2.5	23	85	0	78	24	22	22	29	1.99
11643276--11643494	29	7.4	30	70	21	108	34	3	27	34	1.73
11643276--11643469	59	3.3	59	85	4	266	35	2	27	34	1.71
11643762--11643871	29	3.5	33	78	10	97	55	10	14	20	1.67
11643793--11643871	33	2.4	33	81	8	90	54	11	16	17	1.71
11645460--11645517	17	3.5	17	86	11	68	53	6	0	39	1.28
11645470--11645518	18	2.8	18	87	9	66	55	4	0	40	1.19
11645485--11645539	24	2.3	24	80	0	65	50	5	1	41	1.36
11646388--11647494	373	3.0	373	93	1	1789	32	18	15	32	1.92
11646385--11647507	76	15.0	76	87	4	1523	32	18	15	32	1.92
11649183--11649224	9	4.6	9	80	16	50	0	16	4	78	0.91
11649186--11649227	15	2.7	16	79	17	52	0	16	4	78	0.91
11649183--11649224	18	2.3	19	88	12	61	0	16	4	78	0.91
11654527--11654627	30	3.5	30	74	16	113	34	3	26	34	1.75
11654522--11654657	58	2.3	58	93	0	227	32	3	30	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11654556--11654656	28	3.5	29	75	16	111	33	1	28	35	1.69
11654556--11654671	28	4.0	28	73	15	85	31	1	30	36	1.68
11655469--11655503	16	2.2	16	90	10	54	11	5	5	77	1.12
11655463--11655510	22	2.1	23	85	11	64	12	6	6	75	1.19
11656616--11656655	17	2.5	16	92	8	64	55	7	0	37	1.29
11656625--11656677	24	2.3	23	83	3	61	50	7	1	39	1.41
11662813--11662846	2	17.0	2	93	0	59	52	0	0	47	1.00
11663815--11663869	27	2.0	27	85	0	74	25	9	7	58	1.55
11664236--11664318	40	2.1	40	100	0	166	44	4	9	40	1.58
11666389--11666422	18	1.9	17	88	5	50	44	0	5	50	1.26
11666798--11666833	3	12.0	3	100	0	72	66	0	0	33	0.92
11674914--11674947	14	2.4	14	90	0	50	20	20	38	20	1.94
11676577--11676824	29	8.5	28	67	20	100	33	2	30	33	1.71
11676547--11676680	59	2.3	59	92	3	218	32	2	31	33	1.70
11676601--11676767	88	1.9	88	93	0	289	32	2	30	34	1.71
11676664--11676827	59	2.8	59	87	2	231	33	2	29	34	1.71
11676547--11676833	147	2.0	146	91	4	472	33	2	30	34	1.71
11676811--11676886	29	2.6	29	77	10	82	31	6	23	38	1.81
11677564--11677606	22	2.1	22	87	12	65	6	30	0	62	1.21
11677876--11678098	105	2.1	105	99	0	439	38	12	2	46	1.56
11678849--11678906	17	3.5	17	86	11	68	53	6	0	39	1.28
11678859--11678907	18	2.8	18	87	9	66	55	4	0	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11678874--11678928	24	2.3	24	80	0	65	50	5	1	41	1.36
11680743--11680780	18	2.2	17	90	4	58	18	2	0	78	0.86
11685494--11685535	19	2.2	20	86	4	59	21	7	26	45	1.77
11687581--11687644	24	2.7	24	90	0	101	17	29	4	48	1.67
11694525--11694565	18	2.2	20	91	8	68	78	0	19	2	0.87
11694527--11694571	14	3.3	13	87	9	63	73	0	22	4	1.01
11695816--11696182	24	15.3	24	79	0	302	36	15	27	21	1.93
11695816--11696183	96	3.8	95	81	2	353	36	15	27	21	1.93
11699046--11699084	16	2.4	17	95	4	71	53	0	2	43	1.14
11699458--11700144	76	9.0	76	90	1	1045	32	18	16	33	1.93
11702952--11703004	24	2.2	24	100	0	106	22	28	15	33	1.94
11703058--11703124	30	2.2	30	81	0	80	35	7	17	38	1.78
11704556--11704611	27	2.1	27	96	0	103	26	10	5	57	1.54
11705427--11705483	22	2.5	22	94	2	96	24	0	12	63	1.29
11712944--11712993	25	2.0	26	84	4	66	42	0	2	56	1.11
11712971--11713040	20	3.5	20	86	9	90	35	0	7	57	1.26
11719374--11719652	58	4.8	59	83	5	336	35	4	26	33	1.77
11719377--11719663	29	9.8	29	70	16	166	35	5	26	33	1.79
11729468--11729654	30	6.2	30	85	9	195	32	1	26	40	1.66
11729482--11729654	59	2.9	60	86	6	217	32	1	26	40	1.63
11730634--11730678	10	4.5	10	80	0	54	42	4	6	46	1.50
11730928--11730957	13	2.3	13	94	0	51	30	13	46	10	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11731784--11731904	42	3.0	39	76	7	116	25	17	29	27	1.97
11731876--11732603	39	18.7	38	70	13	385	25	19	30	24	1.98
11731874--11732564	78	8.9	77	82	3	776	26	19	30	24	1.98
11733769--11733807	16	2.3	18	86	8	55	15	0	10	74	1.07
11736512--11736543	7	4.6	7	96	0	55	21	0	0	78	0.76
11744893--11745016	29	4.2	30	83	4	137	33	0	24	41	1.61
11745983--11746032	6	8.3	6	95	0	73	44	0	4	52	1.20
11745983--11746032	8	6.2	8	90	0	73	44	0	4	52	1.20
11764911--11765115	29	7.1	29	76	14	144	32	12	26	29	1.92
11764958--11765030	30	2.5	30	86	6	96	38	8	21	31	1.83
11764899--11765096	88	2.3	87	81	8	224	32	12	25	28	1.93
11764899--11765116	58	3.8	57	78	8	217	32	11	26	29	1.91
11765097--11765235	58	2.4	59	87	3	192	36	2	28	33	1.69
11765126--11765320	87	2.2	86	83	6	232	36	3	26	33	1.72
11765097--11765333	58	4.1	57	77	9	185	36	3	27	32	1.74
11765127--11765333	29	7.1	28	75	10	166	36	3	27	33	1.73
11766514--11766570	19	3.2	17	75	20	53	36	3	1	57	1.26
11767137--11767176	11	3.6	11	82	0	53	52	0	0	47	1.00
11767132--11767175	22	2.0	23	90	4	72	54	0	2	43	1.12
11767130--11767240	6	19.5	6	71	13	74	50	5	2	41	1.39
11767146--11767237	17	5.5	17	77	2	96	54	6	2	36	1.39
11767151--11767239	34	2.7	33	83	1	115	53	6	2	37	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11767828--11767927	39	2.6	39	85	0	128	29	22	28	21	1.99
11768141--11768733	97	6.1	97	89	1	868	15	26	20	37	1.93
11772148--11772208	29	2.1	28	85	8	79	22	11	31	34	1.90
11772139--11772355	58	3.7	57	80	8	224	30	10	27	31	1.90
11772163--11772417	29	8.8	30	75	14	180	33	9	27	30	1.87
11772313--11772535	59	3.8	59	82	4	229	36	4	24	34	1.77
11772225--11772535	29	10.6	29	77	12	210	35	6	25	32	1.82
11774432--11774541	6	19.5	6	67	15	56	50	5	3	40	1.43
11774448--11774538	17	5.4	17	77	2	94	53	6	3	36	1.43
11774434--11774476	22	2.0	22	86	9	61	53	0	2	44	1.13
11774452--11774540	34	2.7	33	80	1	106	53	6	3	35	1.44
11804992--11805030	16	2.3	17	86	8	53	74	10	0	15	1.07
11806752--11807544	39	20.4	38	68	8	218	24	30	18	25	1.98
11806754--11806975	117	1.9	117	83	1	293	24	27	19	28	1.98
11806752--11807002	117	2.1	117	80	2	281	23	28	19	28	1.98
11806832--11807544	156	4.6	154	83	3	836	24	31	18	25	1.98
11807434--11807603	39	4.3	38	76	16	114	25	27	20	26	1.99
11806832--11807559	78	9.4	77	81	6	700	25	30	18	25	1.98
11808437--11808466	13	2.3	13	94	0	51	10	46	13	30	1.75
11809655--11809870	30	7.2	30	81	7	217	39	25	1	33	1.65
11809662--11809845	59	3.1	60	84	5	232	40	25	1	33	1.63
11824388--11824523	30	4.6	30	82	2	150	34	25	3	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11824388--11824554	59	2.8	59	73	6	158	32	26	3	37	1.74
11829059--11829097	19	2.1	19	90	4	62	56	5	0	38	1.22
11829086--11829136	26	2.0	26	84	0	66	54	1	0	43	1.11
11829121--11829186	20	3.4	19	77	8	71	66	4	1	27	1.20
11829475--11829523	3	16.3	3	95	0	89	32	2	0	65	1.04
11836028--11836059	10	3.4	10	83	16	50	50	0	31	18	1.48
11850485--11850687	109	1.9	109	83	6	268	25	29	18	27	1.98
11850658--11851324	39	17.1	39	69	14	311	24	30	19	25	1.98
11850583--11851256	78	8.7	78	85	2	750	24	30	19	25	1.98
11851204--11851315	42	2.8	38	80	9	116	26	30	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163