genome.fa.s8.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  13  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3660125--3660184	6	10.3	6	81	3	70	76	1	3	18	1.00
3660124--3660173	22	2.2	23	92	3	84	76	2	2	20	0.99
3663323--3663361	17	2.3	16	83	12	51	51	2	2	43	1.29
3663351--3663393	17	2.6	16	88	7	59	58	2	4	34	1.32
3663614--3663642	14	2.0	15	93	6	51	68	0	24	6	1.13
3666644--3666772	41	3.1	41	79	2	125	35	21	17	25	1.95
3668958--3668990	3	11.0	3	93	0	57	69	0	30	0	0.88
3672634--3672661	2	14.0	2	100	0	56	50	0	0	50	1.00
3676477--3676507	15	2.1	15	100	0	62	38	9	12	38	1.77
3684636--3684678	18	2.4	18	80	7	52	25	20	18	34	1.96
3689654--3689689	2	18.0	2	100	0	72	50	0	0	50	1.00
3691857--3691976	23	5.1	23	81	11	145	12	25	22	40	1.89
3691881--3691966	25	3.6	24	73	17	74	12	27	20	38	1.90
3691857--3691976	48	2.6	46	85	7	161	12	25	22	40	1.89
3691937--3692015	39	2.0	39	90	0	122	12	20	21	45	1.84
3691976--3692070	23	4.1	23	75	16	79	11	24	18	45	1.83
3697957--3698023	27	2.4	27	82	2	89	34	8	25	31	1.87
3703921--3703966	21	2.2	21	96	0	83	30	21	4	43	1.72
3712126--3712188	30	2.2	29	83	8	83	50	22	4	22	1.67
3715659--3715723	33	1.9	33	84	9	87	58	4	1	35	1.28
3715778--3715817	17	2.2	19	86	8	57	62	7	10	20	1.50
3725000--3725061	6	10.2	6	86	10	90	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3725251--3725281	15	2.1	15	100	0	62	19	54	12	12	1.70
3726891--3727057	30	5.6	30	84	2	185	37	25	2	34	1.69
3726900--3727080	60	3.0	60	85	4	215	37	29	1	32	1.65
3726891--3727054	90	1.8	90	85	2	231	38	25	2	33	1.69
3726913--3727080	30	5.7	29	85	4	158	37	29	1	32	1.65
3727040--3727250	59	3.6	58	83	6	212	30	29	3	36	1.73
3727090--3727231	30	4.8	30	70	9	103	31	28	4	35	1.78
3727090--3727249	29	5.5	29	70	9	137	31	26	4	37	1.76
3729232--3729482	37	6.9	36	76	13	199	27	21	14	35	1.93
3729237--3729482	109	2.2	110	80	8	261	28	21	14	35	1.93
3733247--3733513	38	7.3	37	74	7	100	28	10	11	48	1.73
3733308--3733794	38	13.3	38	68	13	101	31	11	10	47	1.73
3733472--3733654	71	2.5	71	76	8	163	30	12	10	46	1.76
3733267--3733798	37	14.5	37	72	10	267	30	10	11	47	1.73
3736087--3736314	114	2.0	113	96	0	420	36	13	21	28	1.91
3737172--3737358	42	4.4	42	89	2	248	31	28	18	22	1.97
3737173--3737358	85	2.2	84	86	3	257	30	28	18	22	1.97
3737363--3737478	43	2.7	44	76	7	121	32	20	18	27	1.97
3737258--3737463	105	2.0	105	83	1	261	32	25	18	23	1.97
3737415--3737497	43	1.9	43	87	0	121	31	20	16	31	1.95
3737216--3737481	148	1.8	147	82	2	345	31	25	18	24	1.97
3740695--3740817	29	4.2	30	69	19	98	34	3	27	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3740600--3740788	59	3.2	58	80	8	215	38	4	25	31	1.77
3740791--3740847	30	1.9	30	92	0	96	36	5	17	40	1.72
3742647--3742776	17	7.5	17	82	7	154	54	3	1	40	1.28
3742642--3742712	29	2.5	28	77	9	72	50	1	2	45	1.25
3742647--3742776	35	3.7	33	84	10	145	54	3	1	40	1.28
3742642--3742748	6	18.2	6	75	13	89	53	1	1	42	1.22
3743391--3743920	92	5.7	92	89	4	821	32	15	16	35	1.90
3743399--3743920	191	2.8	183	90	5	830	32	15	15	35	1.89
3743676--3743908	40	5.2	41	66	25	134	34	15	15	34	1.89
3743394--3743917	283	1.9	282	92	0	895	33	15	16	35	1.90
3745304--3745374	12	6.4	11	79	11	65	0	15	4	80	0.86
3745299--3745373	21	3.5	20	77	15	87	0	14	5	80	0.89
3750753--3750891	59	2.4	58	83	9	183	38	2	28	30	1.69
3750693--3750889	59	3.4	59	80	8	181	37	3	25	32	1.73
3750855--3751008	30	5.2	29	87	5	184	37	4	18	38	1.72
3750799--3750969	59	2.9	59	78	13	156	37	3	24	34	1.73
3750863--3751018	60	2.6	60	87	5	210	38	4	17	39	1.71
3752800--3752870	29	2.5	28	77	9	72	50	1	2	45	1.25
3752805--3752934	17	7.5	17	83	7	163	54	3	1	40	1.25
3752805--3752934	35	3.7	33	85	10	154	54	3	1	40	1.25
3752800--3752906	6	18.2	6	75	13	89	53	1	1	42	1.22
3756547--3756571	12	2.1	12	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3757204--3757237	10	3.3	10	84	8	50	61	0	0	38	0.96
3757290--3757426	9	14.7	10	68	20	57	62	1	4	31	1.23
3757303--3757426	26	4.6	26	67	22	51	63	1	4	29	1.24
3757301--3757404	18	5.9	16	76	16	73	65	0	4	28	1.19
3757317--3757426	45	2.4	48	77	13	122	61	1	5	30	1.29
3757355--3757424	18	3.7	18	80	19	81	61	2	5	30	1.34
3757333--3757423	36	2.5	36	82	12	105	60	2	5	31	1.32
3757560--3757630	36	2.0	36	86	5	99	33	4	2	59	1.31
3764985--3765067	16	5.1	16	74	11	69	36	3	8	51	1.50
3766818--3767032	30	7.3	29	78	10	172	34	28	2	34	1.72
3766831--3767085	59	4.4	59	86	3	295	36	26	2	34	1.69
3766831--3767085	29	8.7	30	77	6	220	36	26	2	34	1.69
3772712--3772822	12	8.2	13	73	17	77	78	0	18	1	0.90
3772712--3772827	19	6.2	19	71	21	84	78	0	18	1	0.89
3772725--3772827	32	3.5	29	79	11	113	78	0	18	1	0.90
3772723--3772796	32	2.3	32	95	0	130	78	0	18	2	0.87
3772712--3772827	20	5.8	20	72	17	82	78	0	18	1	0.89
3772712--3772830	32	3.7	33	81	10	106	77	0	20	1	0.91
3773998--3774289	150	1.9	150	92	0	485	39	18	26	14	1.90
3774149--3774396	100	2.5	100	85	0	316	39	19	26	14	1.90
3774027--3774586	150	3.7	148	78	5	400	39	18	26	16	1.91
3774148--3774438	100	2.9	99	80	2	314	39	18	27	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3773998--3774579	250	2.3	251	85	1	756	39	17	26	15	1.90
3774250--3774595	150	2.3	150	79	3	401	39	17	26	17	1.91
3774676--3774875	101	2.0	101	89	0	310	34	15	19	31	1.93
3775072--3775859	201	3.9	201	88	2	1096	34	18	23	23	1.96
3775721--3776011	152	1.9	152	90	0	465	34	19	23	22	1.97
3775884--3776278	206	1.9	206	84	3	526	36	19	21	22	1.95
3775478--3776217	358	2.1	358	88	2	1092	35	19	22	22	1.96
3776620--3776660	16	2.5	16	88	4	55	41	4	2	51	1.36
3776620--3776706	17	5.2	16	75	8	75	35	4	8	51	1.52
3776619--3776706	34	2.6	33	75	8	88	36	4	7	51	1.52
3778409--3778712	30	10.4	28	75	9	200	35	26	3	33	1.75
3778409--3778712	58	5.2	59	79	8	266	35	26	3	33	1.75
3778447--3778712	29	9.1	29	74	12	206	36	27	3	32	1.74
3781595--3781639	18	2.6	17	82	6	54	51	0	8	40	1.33
3781596--3781634	18	2.2	18	90	0	60	56	0	7	35	1.28
3786052--3786099	25	2.0	25	88	8	73	22	0	20	56	1.43
3788442--3788519	39	2.0	39	94	0	138	29	43	14	12	1.82
3790038--3790072	15	2.3	15	90	9	54	57	0	2	40	1.14
3801418--3801501	6	14.3	6	75	18	79	47	2	0	50	1.14
3801423--3801512	17	5.2	17	83	10	101	47	2	1	48	1.21
3803431--3803692	29	9.1	29	77	10	245	35	26	3	33	1.75
3803435--3803688	87	2.9	87	81	9	270	36	25	3	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3803466--3803665	58	3.4	58	88	3	296	36	26	3	34	1.73
3803651--3803815	87	1.9	88	80	8	194	29	27	7	35	1.85
3825020--3825168	81	1.9	81	84	9	209	51	8	8	31	1.63
3826048--3826077	15	2.1	15	93	6	53	36	0	3	60	1.14
3826655--3826704	24	2.1	24	82	10	59	20	8	4	68	1.32
3828916--3828978	28	2.2	28	86	5	83	26	9	30	33	1.88
3828929--3829038	28	3.9	28	77	14	100	33	7	31	27	1.84
3828930--3829098	30	5.8	30	76	13	88	34	4	28	31	1.78
3829015--3829153	60	2.3	60	92	0	224	38	0	21	39	1.54
3828992--3829153	30	5.4	30	84	3	193	38	1	22	37	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163