genome.fa.s8.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  135  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36672228--36672271	6	7.2	6	86	2	52	22	29	0	47	1.51
36680995--36682107	556	2.0	556	99	0	2181	37	10	16	35	1.83
36685675--36685720	7	6.7	7	82	5	58	30	23	23	21	1.99
36685669--36685710	14	3.1	14	82	6	59	28	23	21	26	1.99
36685675--36685720	20	2.2	21	84	3	58	30	23	23	21	1.99
36685669--36685720	27	1.9	27	88	0	77	30	23	21	25	1.99
36690450--36690495	13	3.7	12	77	11	56	47	17	15	19	1.82
36690450--36690495	6	7.3	6	80	9	56	47	17	15	19	1.82
36690450--36690495	19	2.4	19	82	7	58	47	17	15	19	1.82
36690511--36690579	27	2.6	27	78	0	75	17	20	37	24	1.93
36694431--36694536	30	3.7	29	73	7	90	36	4	16	41	1.70
36694405--36694553	57	2.6	58	76	3	147	34	4	19	40	1.72
36694976--36695026	13	3.6	14	77	15	52	3	43	25	27	1.72
36696247--36696581	123	2.7	123	85	2	440	22	20	16	40	1.91
36696477--36696664	76	2.5	76	86	0	250	21	19	18	40	1.92
36696552--36696790	124	1.9	124	85	0	325	22	19	18	39	1.93
36696344--36696807	200	2.3	199	82	4	549	22	19	17	40	1.91
36699941--36700220	29	9.5	28	64	21	85	35	2	27	35	1.69
36699911--36700014	29	3.5	31	68	15	83	35	1	23	39	1.66
36699846--36700222	59	6.4	59	87	1	522	34	2	27	35	1.70
36700294--36700781	162	3.0	162	87	3	709	43	12	18	26	1.85
36701020--36701063	21	2.1	21	83	8	54	4	47	4	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36701493--36701540	13	3.8	13	86	2	53	41	0	0	58	0.98
36701510--36701549	3	13.0	3	84	5	53	37	0	0	62	0.95
36701499--36701557	9	6.7	9	76	18	52	42	0	0	57	0.98
36702324--36702423	6	17.0	6	73	18	86	54	1	2	43	1.18
36702308--36702393	17	5.3	17	80	10	90	50	0	3	46	1.18
36702325--36702416	11	8.0	11	78	17	66	55	0	2	42	1.12
36702336--36702425	31	3.0	29	86	4	108	56	1	2	40	1.19
36712630--36712821	89	2.1	90	84	4	246	33	7	21	37	1.81
36712630--36712820	30	6.4	29	72	12	120	34	7	21	37	1.81
36712657--36712840	30	6.2	30	78	7	153	36	6	20	36	1.78
36717016--36717046	12	2.6	12	89	0	53	74	0	9	16	1.07
36717486--36717563	27	2.7	29	78	13	79	35	6	11	46	1.66
36717507--36717562	27	2.0	28	89	3	87	32	5	14	48	1.66
36727264--36727447	73	2.5	73	81	3	192	25	20	32	22	1.98
36727600--36727689	39	2.3	39	88	3	137	40	18	13	27	1.88
36727666--36727711	22	2.1	22	95	0	83	36	21	13	28	1.91
36727625--36727750	61	2.1	61	87	0	180	38	19	15	26	1.91
36727686--36727819	39	3.4	39	88	4	207	34	20	19	26	1.96
36727595--36727786	100	1.9	100	84	2	260	37	20	15	26	1.92
36728573--36728653	29	2.7	30	76	5	74	50	8	8	32	1.63
36740856--36740931	21	3.6	21	80	0	80	47	14	6	31	1.70
36740877--36740946	21	3.3	21	76	4	70	45	15	7	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36741725--36741931	18	11.5	18	74	2	128	37	19	10	32	1.86
36741738--36741905	72	2.3	72	79	2	185	38	19	10	32	1.85
36741721--36741911	90	2.1	90	82	1	231	38	19	9	32	1.85
36747423--36747461	18	2.1	19	86	13	55	56	2	2	38	1.27
36749732--36749986	59	4.3	59	87	2	246	38	5	26	29	1.79
36749777--36749937	29	5.4	29	67	16	98	39	3	24	32	1.73
36749769--36750025	59	4.4	59	87	3	306	37	3	25	33	1.74
36749805--36749966	29	5.5	29	67	20	95	41	3	22	32	1.72
36749889--36749995	29	3.7	29	69	22	82	39	3	23	33	1.73
36749978--36750225	30	8.2	30	86	4	329	34	3	24	37	1.73
36749978--36750225	61	4.1	60	85	4	329	34	3	24	37	1.73
36749983--36750225	91	2.7	91	89	3	368	35	3	23	37	1.73
36750331--36750641	161	1.9	160	86	5	441	47	11	15	25	1.79
36751107--36751158	11	4.8	10	79	13	50	1	26	0	71	0.97
36752010--36752057	15	3.0	17	91	8	75	12	10	54	22	1.68
36752118--36752178	14	4.5	14	85	8	90	16	18	29	36	1.92
36752118--36752178	26	2.2	28	88	5	90	16	18	29	36	1.92
36752205--36752273	17	4.1	16	83	12	77	52	2	1	43	1.25
36752222--36752276	6	9.7	6	76	11	62	52	1	1	43	1.22
36752221--36752283	11	5.5	11	83	5	81	53	1	3	41	1.26
36752629--36753236	68	8.9	68	89	3	873	29	19	15	34	1.93
36752704--36752821	38	3.3	36	68	16	102	33	20	11	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36752629--36753240	206	3.0	203	90	3	897	30	19	15	34	1.93
36752629--36753238	274	2.2	275	93	2	1039	29	19	15	34	1.93
36765170--36765337	29	5.7	29	65	14	85	38	5	26	30	1.78
36765133--36765494	59	6.3	59	83	7	237	39	6	26	28	1.80
36765177--36765337	30	5.4	29	69	16	116	39	4	24	31	1.75
36765177--36765533	59	6.2	59	84	8	454	39	4	24	31	1.74
36765201--36765474	29	9.7	29	65	26	119	41	4	23	30	1.74
36765311--36765468	49	3.0	49	78	16	199	42	4	24	29	1.74
36765381--36765684	30	10.2	28	78	11	106	37	4	23	35	1.74
36765190--36765503	167	1.9	166	92	0	529	39	4	24	31	1.75
36765252--36765468	108	2.0	108	99	0	425	42	4	23	29	1.74
36765483--36765745	30	8.7	30	88	3	357	35	4	22	37	1.74
36765486--36765745	91	2.9	91	90	3	400	35	4	22	37	1.74
36765842--36766155	162	1.9	162	85	3	436	47	11	15	26	1.79
36766622--36766655	13	2.6	13	86	13	52	0	26	0	73	0.83
36767527--36767574	15	3.0	17	91	8	75	12	10	54	22	1.68
36767635--36767695	14	4.5	14	85	8	90	16	18	29	36	1.92
36767635--36767695	26	2.2	28	88	5	90	16	18	29	36	1.92
36767722--36767790	17	4.1	16	83	12	77	52	2	1	43	1.25
36767739--36767793	6	9.7	6	76	11	62	52	1	1	43	1.22
36767738--36767800	11	5.5	11	83	5	81	53	1	3	41	1.26
36768658--36768716	10	5.4	10	74	18	55	44	1	1	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36768617--36768716	45	2.2	46	85	1	130	42	2	3	53	1.28
36769828--36769861	17	1.9	18	88	5	52	32	5	17	44	1.73
36773434--36773682	53	4.7	53	84	0	338	33	21	16	28	1.95
36774055--36774093	16	2.3	16	86	8	51	41	2	2	53	1.28
36775717--36776232	30	17.5	30	78	5	511	36	24	2	37	1.69
36775717--36776206	59	8.3	59	82	3	515	36	24	2	36	1.70
36776360--36776401	14	3.0	14	79	6	50	16	7	4	71	1.26
36781736--36781810	39	1.9	39	97	0	141	42	1	28	28	1.64
36785920--36786061	23	6.1	23	80	9	144	42	21	22	13	1.88
36785892--36786056	48	3.5	48	77	11	144	41	21	24	13	1.88
36785915--36786053	71	2.0	69	83	5	172	41	22	23	12	1.88
36786127--36786182	24	2.3	26	79	17	66	33	23	0	42	1.54
36786622--36786651	10	2.8	11	90	10	53	33	0	0	66	0.92
36790873--36792254	39	35.6	39	66	15	147	25	30	18	25	1.98
36790907--36791741	78	10.8	78	81	1	807	25	30	18	25	1.98
36790907--36791741	155	5.4	156	79	2	793	25	30	18	25	1.98
36791721--36792267	78	7.0	77	81	2	504	26	30	17	25	1.98
36791604--36791861	117	2.2	116	85	4	347	27	30	17	24	1.97
36791642--36791903	117	2.2	114	80	5	274	26	29	17	25	1.97
36791721--36792255	156	3.4	155	83	2	588	26	30	17	25	1.97
36792652--36792689	16	2.3	17	90	4	60	42	2	2	52	1.29
36793348--36793395	22	2.0	26	84	15	68	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36794312--36794662	30	12.0	29	78	10	326	35	24	2	37	1.68
36794315--36794637	59	5.5	59	83	6	345	35	25	2	36	1.69
36794788--36794829	14	2.9	15	86	6	61	19	4	4	71	1.22
36802101--36802157	22	2.6	22	97	0	105	33	33	0	33	1.58
36803724--36804282	279	2.0	279	98	0	1073	27	13	19	38	1.90
36804615--36804639	12	2.1	12	100	0	50	52	0	0	48	1.00
36804627--36804693	26	2.6	26	97	0	125	50	13	0	35	1.42
36810516--36810548	16	2.1	16	94	5	59	15	6	12	66	1.42
36810754--36810842	43	2.1	43	82	4	108	26	16	23	32	1.96
36823515--36823552	18	2.1	18	90	9	60	26	10	13	50	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163