genome.fa.s8.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  57  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14273043--14273075	10	3.5	10	92	8	52	78	0	6	15	0.93
14283150--14283223	37	1.9	37	81	10	87	27	16	21	35	1.94
14286707--14286765	19	3.1	19	74	16	59	64	1	1	32	1.13
14288641--14288686	21	2.1	22	88	4	67	41	4	23	30	1.74
14301428--14301457	14	2.1	14	93	0	51	70	0	3	26	1.03
14301685--14301745	24	2.5	24	89	0	95	24	13	11	50	1.74
14303675--14303725	24	2.1	24	96	0	93	21	11	9	56	1.63
14303683--14303737	24	2.3	24	90	0	83	25	14	10	49	1.76
14305665--14305727	24	2.6	24	89	0	99	23	14	11	50	1.74
14307971--14307995	9	2.8	9	100	0	50	32	20	12	36	1.89
14312710--14312774	30	2.2	31	83	5	80	44	12	6	36	1.67
14314601--14314625	2	12.5	2	100	0	50	52	0	0	48	1.00
14327538--14328021	39	12.4	39	70	11	258	25	19	31	23	1.98
14327567--14328041	78	6.1	78	81	3	458	25	20	30	23	1.98
14327567--14328041	156	3.1	154	82	5	546	25	20	30	23	1.98
14328295--14328447	49	3.1	49	82	1	191	16	30	16	36	1.91
14341414--14341454	11	3.6	11	83	6	55	63	14	7	14	1.50
14343920--14344000	29	2.8	29	66	15	69	34	14	27	23	1.94
14345252--14345300	18	2.7	19	81	6	57	46	18	6	28	1.72
14348170--14348228	21	2.8	21	82	5	66	30	11	27	30	1.92
14351196--14351233	13	3.2	12	85	11	51	36	0	0	63	0.95
14354098--14354137	2	20.0	2	100	0	80	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14364122--14364180	23	2.6	23	86	0	82	6	16	22	54	1.66
14364122--14364187	23	2.9	23	83	0	60	7	18	19	54	1.67
14370893--14370925	17	1.9	17	93	0	57	33	15	3	48	1.60
14370896--14370934	18	2.2	17	86	4	51	35	17	2	43	1.63
14371876--14371983	24	5.1	24	60	28	64	28	24	33	13	1.94
14371798--14372064	41	6.6	41	83	2	315	31	22	29	17	1.97
14374307--14374346	18	2.2	18	86	8	55	0	15	7	77	0.98
14375462--14375625	43	3.8	43	89	1	231	25	21	26	27	1.99
14375462--14375625	85	1.9	86	87	1	240	25	21	26	27	1.99
14378893--14378933	14	2.9	14	82	13	57	39	2	0	58	1.11
14383995--14384921	308	3.0	307	85	3	1297	31	17	14	36	1.90
14385930--14385973	23	1.9	23	81	9	54	34	6	2	56	1.38
14389004--14389072	32	2.2	32	83	0	84	34	11	2	50	1.54
14389106--14389145	21	1.9	21	94	0	71	40	12	17	30	1.86
14389817--14389865	23	2.2	22	85	10	64	44	6	10	38	1.63
14395636--14395660	9	2.8	9	100	0	50	12	36	0	52	1.39
14395761--14395941	91	2.0	91	98	0	353	35	16	14	32	1.90
14402662--14402777	44	2.6	43	79	9	106	68	17	2	11	1.30
14402720--14402760	12	3.4	12	79	0	55	73	14	2	9	1.19
14402712--14402790	24	3.3	24	81	10	90	70	15	2	11	1.26
14402718--14402800	24	3.6	22	83	4	76	71	13	3	12	1.28
14402774--14402832	22	2.8	21	85	7	75	67	15	5	11	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14406985--14407045	32	1.9	32	86	0	86	27	9	8	54	1.62
14407551--14407594	18	2.4	18	88	0	70	38	0	0	61	0.96
14407551--14407597	12	3.9	12	91	0	67	38	0	0	61	0.96
14407560--14407593	6	5.7	6	100	0	68	35	0	0	64	0.94
14424618--14424713	29	3.1	29	72	18	104	42	0	6	51	1.27
14424643--14424743	21	4.8	20	69	17	71	40	0	2	56	1.14
14424630--14424736	34	3.3	34	75	17	136	41	0	4	54	1.21
14424618--14424744	63	2.0	63	100	0	254	41	0	4	53	1.22
14424951--14424995	22	2.1	22	87	4	65	51	0	0	48	1.00
14424950--14425001	25	2.0	26	82	10	63	51	0	0	48	1.00
14425825--14425906	29	2.8	29	73	14	87	47	1	4	46	1.31
14427160--14427196	17	2.1	18	90	5	58	40	0	0	59	0.97
14427873--14427953	9	8.0	10	71	16	60	29	2	1	66	1.12
14427970--14428034	11	6.2	11	75	10	55	43	3	0	53	1.16
14428008--14428072	20	3.2	20	70	23	55	38	6	0	55	1.25
14430116--14430149	17	2.0	17	88	0	50	50	0	2	47	1.16
14430211--14430296	17	5.0	17	74	4	75	43	1	4	51	1.30
14430257--14430296	6	6.8	6	83	16	57	50	0	0	50	1.00
14430461--14430643	88	2.1	88	94	0	321	25	39	13	21	1.90
14432166--14432332	30	5.6	29	70	16	110	34	28	1	34	1.68
14432196--14432558	29	12.5	27	68	23	145	31	32	3	32	1.74
14432224--14432563	116	2.9	116	86	3	470	31	32	3	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14432196--14432559	175	2.1	175	88	4	538	31	32	3	32	1.74
14432224--14432563	59	5.8	58	86	4	452	31	32	3	32	1.74
14432218--14432617	175	2.3	174	85	5	497	31	31	3	33	1.76
14434169--14434288	58	2.1	58	90	3	188	47	20	0	32	1.50
14435463--14435533	24	3.0	24	89	0	106	54	7	12	25	1.62
14437148--14437180	8	4.1	8	100	0	66	51	0	24	24	1.48
14437448--14437528	21	3.8	21	72	18	60	64	4	2	28	1.27
14438548--14438787	122	2.0	122	91	1	392	41	10	12	35	1.78
14439192--14439247	25	2.2	24	81	6	58	23	12	8	55	1.65
14439167--14439352	95	2.0	95	93	0	318	22	15	10	51	1.74
14439504--14439546	10	4.5	10	82	8	54	69	0	2	27	1.00
14439486--14439546	28	2.2	28	86	11	90	67	1	3	27	1.16
14439498--14439546	19	2.7	18	79	14	55	69	0	4	26	1.06
14439506--14439547	19	2.4	17	84	8	57	69	0	2	28	1.01
14441350--14441400	26	2.0	24	82	14	59	35	1	0	62	1.06
14444979--14445028	24	2.0	26	88	7	77	30	0	34	36	1.58
14446737--14446977	90	2.7	90	79	3	277	38	18	8	34	1.82
14447427--14447519	19	4.8	20	76	10	77	30	3	5	61	1.34
14447437--14447507	9	7.5	10	68	16	53	32	1	4	61	1.23
14447437--14447519	29	2.9	29	73	8	80	32	2	3	61	1.26
14447493--14447567	19	3.8	20	77	8	66	34	4	1	60	1.24
14447499--14447549	20	2.5	20	81	9	59	37	3	0	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14447779--14447914	63	2.1	64	83	8	168	36	6	13	43	1.70
14461488--14461557	30	2.7	24	75	23	70	44	1	4	50	1.30
14461503--14461558	30	1.9	29	92	7	96	42	0	5	51	1.24
14462038--14462087	26	1.9	26	84	8	66	50	2	2	46	1.24
14463382--14463419	17	2.3	17	86	4	51	60	2	0	36	1.11
14474544--14474582	2	19.5	2	94	0	69	0	53	0	46	1.00
14475321--14475401	29	2.7	30	81	9	94	51	11	4	32	1.58
14475551--14475637	44	2.0	45	83	2	113	20	10	13	55	1.68
14476267--14476299	17	1.9	17	88	11	50	51	0	0	48	1.00
14479420--14479457	19	2.1	19	85	9	53	50	0	5	44	1.24
14484122--14484161	20	2.1	19	90	4	62	75	0	0	25	0.81
14487237--14487289	19	2.7	20	80	11	65	58	3	0	37	1.16
14487246--14487294	19	2.7	18	81	12	55	55	2	0	42	1.11
14487408--14487447	3	13.3	3	100	0	80	32	0	0	67	0.91
14487549--14487591	21	2.0	21	86	0	59	34	13	2	48	1.56
14488483--14488508	2	13.0	2	100	0	52	50	0	0	50	1.00
14490065--14490094	15	1.9	16	93	6	53	53	6	3	36	1.44
14501525--14501691	58	2.9	58	83	7	214	43	1	1	53	1.22
14501854--14501886	16	2.1	16	88	11	50	33	24	0	42	1.55
14502318--14502395	16	4.6	16	78	15	68	58	1	1	38	1.14
14502340--14502399	18	3.3	18	80	11	61	65	0	0	35	0.93
14502358--14502406	17	2.9	17	84	6	55	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14502462--14502579	51	2.3	52	97	1	220	22	19	9	48	1.77
14504489--14504537	5	9.8	5	86	8	73	40	20	2	36	1.64
14506089--14506127	19	2.0	20	85	14	55	41	15	7	35	1.76
14513018--14513063	23	2.0	23	83	8	58	39	8	17	34	1.80
14515425--14515485	32	1.9	32	89	0	95	27	8	11	52	1.66
14516140--14516394	83	3.1	81	78	10	275	31	9	11	46	1.73
14518174--14518263	46	2.0	46	97	0	171	45	8	13	32	1.74
14532031--14532099	9	6.9	9	72	25	50	0	44	23	31	1.53
14532035--14532108	21	3.5	21	92	0	121	0	45	22	31	1.53
14532049--14532107	11	5.5	11	74	22	63	0	45	25	28	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163