genome.fa.s8.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  119  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32966164--32966219	25	2.3	23	77	19	60	42	3	1	51	1.29
32966195--32966282	19	4.8	18	74	13	81	37	1	2	59	1.18
32966176--32966281	27	4.0	27	91	2	153	40	0	2	55	1.21
32966196--32966282	9	9.6	9	72	12	70	36	1	2	59	1.17
32968773--32968867	17	5.5	17	76	9	77	36	1	4	57	1.25
32968790--32968845	29	1.9	29	85	0	76	33	0	3	62	1.12
32968800--32968867	6	11.5	6	79	7	59	36	0	2	60	1.12
32968807--32968863	11	5.0	11	79	8	51	36	0	1	61	1.07
32968807--32968862	29	1.9	29	82	7	69	35	0	1	62	1.06
32968772--32968900	35	3.7	33	78	12	125	38	2	3	55	1.31
32969600--32969656	25	2.2	26	87	6	89	49	1	1	47	1.22
32970494--32970797	162	1.9	163	90	3	488	26	17	10	45	1.81
32970872--32970936	29	2.2	29	83	5	78	40	18	7	33	1.79
32970958--32971170	29	7.2	30	66	24	105	34	28	4	32	1.77
32970928--32971300	117	3.2	117	85	2	487	31	27	5	35	1.81
32971107--32971197	30	3.1	30	67	16	73	34	27	4	34	1.77
32971107--32971199	29	3.2	29	67	17	75	33	26	4	35	1.76
32970929--32971327	176	2.3	178	85	4	538	32	26	5	35	1.80
32970928--32971300	59	6.3	59	85	2	482	31	27	5	35	1.81
32990561--32991570	76	13.0	76	83	7	1203	33	16	18	32	1.92
32990561--32991570	153	6.5	152	88	5	1427	33	16	18	32	1.92
32991490--32991667	92	1.9	93	85	3	243	32	15	19	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32992125--32992202	17	4.5	17	76	12	77	37	1	5	56	1.30
32992124--32992202	35	2.3	35	84	8	99	36	1	5	56	1.29
32992159--32992202	6	7.5	6	79	5	54	38	0	2	59	1.10
32992124--32992235	53	2.1	52	83	8	138	39	2	4	53	1.35
32992142--32992235	35	2.6	34	83	5	98	39	2	4	54	1.32
32992935--32992992	25	2.3	26	87	6	91	50	1	1	46	1.22
32993809--32994130	162	2.0	163	91	3	524	26	18	11	43	1.85
32994203--32994288	29	2.9	29	81	8	77	37	20	8	33	1.83
32994272--32994672	59	6.8	59	84	4	454	33	26	2	37	1.72
32994274--32994678	177	2.3	176	83	3	501	33	26	2	37	1.72
32994638--32994702	30	2.2	30	83	5	80	30	29	0	40	1.57
32996047--32996091	23	2.0	23	82	8	56	35	20	4	40	1.72
32996033--32996094	23	2.8	21	73	20	54	37	19	4	38	1.73
33000228--33000352	26	4.8	26	80	5	128	22	26	19	32	1.97
33001171--33001205	15	2.3	15	90	0	52	42	8	0	48	1.33
33003118--33004002	442	2.0	441	94	0	1547	32	17	18	31	1.94
33010392--33010525	29	4.6	30	76	13	109	36	25	4	33	1.76
33010395--33010543	30	5.0	30	77	13	121	34	26	4	33	1.78
33010412--33010626	29	7.4	28	72	15	118	32	27	5	34	1.80
33010442--33010655	58	3.7	59	79	9	224	31	28	5	35	1.79
33010463--33010678	59	3.7	58	76	12	203	32	26	6	34	1.81
33010637--33010696	28	2.1	28	87	6	86	36	26	8	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33010637--33010706	28	2.5	27	82	13	79	35	25	7	31	1.83
33013776--33014051	50	5.5	50	70	6	153	26	18	19	34	1.95
33013682--33014044	101	3.7	100	78	5	310	27	19	17	34	1.95
33016776--33016816	21	2.0	21	90	0	64	46	9	9	34	1.70
33020556--33020580	9	2.8	9	100	0	50	48	12	12	28	1.76
33021612--33021840	30	7.8	29	64	19	91	35	3	29	31	1.76
33021577--33021844	59	4.6	58	84	6	204	35	5	29	30	1.79
33021618--33021870	119	2.2	118	85	7	336	35	3	27	33	1.74
33021709--33021881	30	5.9	29	68	21	92	33	2	30	33	1.73
33021619--33021870	59	4.3	59	87	4	332	35	3	27	33	1.73
33022529--33022579	11	4.5	11	78	11	50	1	29	0	68	1.00
33022529--33022571	14	3.2	14	90	6	63	0	32	0	67	0.91
33022897--33022937	13	3.3	13	90	6	59	41	4	2	51	1.36
33023645--33023681	18	2.0	20	89	10	60	32	0	5	62	1.18
33023666--33023754	6	15.0	6	76	18	89	51	0	3	44	1.18
33023687--33023737	11	4.8	11	76	9	52	52	0	5	41	1.25
33023678--33023754	37	2.0	38	82	9	95	53	0	3	42	1.19
33023666--33023754	17	5.4	16	81	14	101	51	0	3	44	1.18
33024157--33024508	38	9.3	37	65	21	142	31	17	16	34	1.92
33024113--33024641	151	3.5	149	89	3	728	31	18	16	34	1.93
33024113--33024641	75	7.0	75	83	7	678	31	18	16	34	1.93
33036664--33036770	30	3.5	30	68	23	80	39	1	26	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33036658--33036918	59	4.4	59	84	6	323	36	3	27	33	1.73
33036658--33036918	120	2.2	119	84	8	327	36	3	27	33	1.73
33036815--33036925	30	3.8	28	71	15	73	34	3	26	36	1.74
33037592--33037642	11	4.5	11	77	20	52	1	27	0	70	0.98
33037592--33037634	14	3.2	14	90	6	63	0	30	0	69	0.88
33037960--33038000	13	3.3	13	90	6	59	41	4	2	51	1.36
33038602--33038630	11	2.7	11	94	5	51	37	10	31	20	1.86
33038732--33038803	6	12.0	6	77	15	51	47	0	2	50	1.15
33039089--33039117	10	2.9	10	100	0	58	31	10	27	31	1.90
33043701--33043851	82	1.9	81	85	1	212	22	21	26	29	1.99
33054017--33054077	16	3.9	15	81	10	68	42	8	21	27	1.81
33054054--33054147	44	2.1	44	84	4	116	36	3	21	39	1.69
33057252--33057278	4	6.8	4	100	0	54	51	22	0	25	1.48
33065283--33065326	13	3.1	15	81	18	67	79	6	13	0	0.92
33066391--33066461	30	2.3	31	80	7	83	29	12	1	56	1.45
33069861--33069984	62	2.0	64	84	7	166	49	14	25	11	1.76
33069971--33069999	8	3.8	8	95	4	51	79	0	20	0	0.74
33070903--33071127	111	2.0	112	86	2	319	29	16	13	40	1.87
33071569--33072787	49	24.9	48	76	6	765	35	15	26	22	1.94
33071575--33072788	98	12.4	98	79	5	974	35	15	26	22	1.94
33071569--33072788	147	8.3	145	77	6	861	35	15	26	22	1.94
33073149--33073243	39	2.4	39	87	0	127	28	32	12	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33090009--33090050	21	2.0	21	90	0	66	61	4	0	33	1.17
33090627--33090687	28	2.2	28	85	11	81	60	1	0	37	1.07
33090637--33090693	14	4.2	13	76	10	51	63	1	0	35	1.05
33090634--33090698	21	3.0	21	80	8	69	63	3	0	33	1.10
33091513--33091563	18	2.7	18	84	9	57	62	0	3	33	1.13
33091673--33091738	26	2.7	26	79	6	66	50	6	0	43	1.27
33091683--33091731	25	1.9	25	83	4	62	46	6	0	46	1.27
33091682--33091765	27	3.2	25	77	8	69	48	5	2	42	1.40
33091770--33091847	4	19.0	4	76	5	66	67	5	3	23	1.27
33091808--33091832	9	2.8	9	100	0	50	80	8	0	12	0.92
33092320--33092361	21	2.0	21	86	9	59	61	4	2	30	1.29
33092782--33092828	22	2.1	22	84	0	58	31	0	6	61	1.21
33093926--33093999	10	7.7	10	70	20	52	64	1	2	31	1.15
33093928--33093999	20	3.7	19	81	9	74	65	1	2	30	1.15
33094262--33094368	4	25.8	4	73	7	70	64	2	4	28	1.27
33094329--33094353	9	2.8	9	100	0	50	80	8	0	12	0.92
33094584--33094651	7	9.0	7	73	20	57	58	0	19	22	1.39
33094584--33094649	23	2.9	22	78	12	71	60	0	19	19	1.36
33095007--33095065	31	1.9	31	93	6	102	40	15	13	30	1.86
33095105--33095237	70	1.9	67	86	7	187	41	9	11	38	1.73
33096420--33096538	58	2.1	58	91	3	195	33	0	18	47	1.49
33097516--33097544	14	2.1	14	100	0	58	13	6	27	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33106755--33106806	17	3.0	18	86	5	63	32	1	0	65	1.04
33107036--33107130	45	2.1	46	90	5	149	18	12	15	52	1.74
33107730--33107769	21	2.0	20	85	5	53	22	37	0	40	1.54
33108694--33108765	17	4.2	17	75	16	69	44	1	5	48	1.34
33109523--33109597	22	3.5	21	72	22	66	57	4	2	36	1.32
33110634--33110965	58	5.7	57	81	8	323	32	28	3	34	1.76
33110662--33110970	29	10.7	28	68	19	163	31	29	4	34	1.77
33110659--33110965	116	2.6	116	88	3	431	32	29	3	34	1.76
33123082--33123899	76	11.1	76	85	6	1008	34	15	18	31	1.92
33123546--33123818	66	4.0	65	80	11	294	35	15	19	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163