genome.fa.s8.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  157  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44177106--44177197	26	3.5	25	77	12	78	52	2	1	44	1.20
44184710--44184761	24	2.2	24	85	0	68	32	3	9	53	1.51
44184717--44184762	24	1.9	24	90	0	74	32	4	10	52	1.56
44189668--44189715	18	2.7	18	76	0	51	10	50	12	27	1.73
44190966--44191167	61	3.3	61	65	14	155	29	15	2	51	1.56
44190939--44191181	121	2.0	121	94	3	427	28	16	3	50	1.62
44193933--44193964	2	16.5	2	93	6	57	50	0	0	50	1.00
44199284--44199334	26	1.9	27	84	4	68	54	5	0	39	1.24
44213724--44214218	161	3.1	161	90	0	794	32	15	17	33	1.92
44216516--44216541	12	2.2	12	100	0	52	69	7	0	23	1.14
44216529--44216575	17	2.7	17	77	12	51	63	6	2	27	1.30
44233661--44233686	3	8.7	3	100	0	52	65	0	34	0	0.93
44237274--44237335	28	2.2	28	80	5	72	33	1	12	51	1.50
44237612--44237739	30	4.3	30	84	4	152	39	21	4	33	1.74
44241026--44241107	30	2.7	29	75	7	83	28	10	18	42	1.84
44241242--44241312	29	2.4	29	81	9	81	47	14	4	33	1.63
44242566--44242604	18	2.2	17	86	4	51	41	0	0	58	0.98
44254386--44254424	16	2.3	18	91	8	64	51	0	0	48	1.00
44255418--44255520	37	2.8	36	62	11	82	43	16	19	20	1.88
44257416--44257444	6	4.8	6	100	0	58	34	0	51	13	1.42
44259277--44259315	4	9.5	4	88	5	60	71	0	28	0	0.86
44259269--44259315	21	2.2	22	81	11	62	74	0	25	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44259368--44259413	20	2.4	19	82	7	56	34	2	2	60	1.21
44262218--44262269	14	3.7	14	92	0	77	25	0	23	51	1.48
44262225--44262284	28	2.2	27	85	8	77	26	0	21	51	1.48
44262527--44262661	45	3.0	45	91	0	207	17	22	29	31	1.96
44264401--44264490	47	1.9	47	81	4	110	51	10	6	32	1.61
44264569--44264618	16	3.2	16	73	21	52	34	0	6	60	1.21
44264982--44265014	13	2.6	13	95	4	59	42	3	0	54	1.15
44269559--44269598	21	1.9	21	89	0	62	47	35	0	17	1.48
44269714--44269759	22	2.0	23	88	12	69	26	0	26	47	1.52
44273620--44273652	16	2.0	17	88	5	50	51	0	0	48	1.00
44274063--44274136	31	2.5	30	80	12	82	18	14	14	51	1.77
44281298--44281348	27	1.9	27	92	4	86	27	15	31	25	1.96
44281358--44281515	30	5.3	29	71	25	116	36	2	30	31	1.71
44281366--44281517	29	5.2	28	71	25	118	36	1	29	32	1.69
44281330--44281525	59	3.3	59	91	0	302	35	3	29	32	1.73
44283352--44283423	6	12.0	6	75	16	69	50	0	4	45	1.21
44283354--44283422	31	2.3	29	85	7	93	50	0	4	44	1.21
44283366--44283423	31	1.9	30	92	3	98	53	0	3	43	1.17
44283373--44283433	11	5.9	10	76	19	54	54	1	3	40	1.27
44284106--44284166	29	2.1	30	84	3	79	55	1	1	40	1.19
44295221--44295292	21	3.6	19	75	14	65	55	4	4	36	1.38
44300473--44300517	16	2.8	16	82	3	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44300686--44300742	20	2.9	20	68	29	50	22	1	8	66	1.29
44300949--44300993	23	2.0	23	82	4	56	44	15	6	33	1.73
44301734--44301782	20	2.5	19	83	9	62	44	0	2	53	1.12
44310861--44310900	20	2.1	19	86	13	55	37	2	2	57	1.26
44310998--44311084	45	1.9	45	88	0	129	39	5	4	50	1.47
44314579--44314616	16	2.2	18	86	9	53	39	13	10	36	1.79
44315822--44315850	2	14.5	2	100	0	58	48	0	0	51	1.00
44322467--44322516	23	2.3	21	79	6	55	32	2	0	66	1.03
44325301--44325346	23	2.0	24	83	12	60	63	4	4	28	1.33
44327152--44327220	30	2.3	30	82	7	95	49	0	1	49	1.09
44331542--44331580	8	4.9	8	90	0	60	82	0	0	17	0.68
44336117--44336142	7	3.7	7	100	0	52	46	0	0	53	1.00
44353547--44353580	12	2.9	11	91	8	50	38	0	0	61	0.96
44356867--44356893	3	9.0	3	100	0	54	33	0	0	66	0.92
44358082--44358178	52	2.0	49	88	10	144	51	4	12	31	1.58
44359239--44359272	6	5.7	6	100	0	68	35	35	14	14	1.87
44362370--44362404	14	2.5	14	90	0	52	31	14	5	48	1.67
44371425--44371457	17	1.9	17	88	11	50	39	18	6	36	1.75
44382998--44383054	29	2.0	27	83	16	71	63	0	5	31	1.17
44383353--44383377	2	12.5	2	100	0	50	52	0	0	48	1.00
44385659--44385731	36	2.1	36	86	2	103	58	8	4	28	1.45
44387232--44387267	17	2.1	17	90	10	56	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44389943--44390045	49	2.1	49	88	0	152	25	13	11	49	1.76
44397292--44397363	36	2.0	36	97	0	135	31	16	26	25	1.96
44426323--44426625	29	10.3	28	76	11	211	41	3	20	34	1.68
44426373--44426625	59	4.3	57	76	13	219	43	2	18	35	1.63
44433304--44433352	21	2.3	22	82	10	66	46	10	4	38	1.57
44433745--44433807	31	2.0	32	81	9	76	49	14	6	30	1.68
44434239--44434264	2	13.0	2	100	0	52	50	0	0	50	1.00
44453563--44453625	31	2.0	32	81	9	76	49	14	6	30	1.68
44459001--44459027	2	13.5	2	100	0	54	48	0	0	51	1.00
44462963--44463026	30	2.2	29	83	8	76	42	1	1	54	1.19
44468026--44468072	26	2.0	23	84	16	60	55	6	0	38	1.26
44485237--44485311	38	2.0	38	92	5	125	28	22	10	38	1.87
44504786--44504817	15	2.0	17	88	11	50	56	0	9	34	1.32
44516549--44516582	15	2.3	15	89	0	50	20	0	5	73	1.04
44516720--44516790	30	2.4	30	97	0	133	59	12	11	16	1.61
44517344--44517416	31	2.4	31	84	9	87	30	13	10	45	1.78
44518229--44518283	21	2.7	20	77	5	56	65	1	5	27	1.25
44527716--44527779	22	2.9	22	95	0	110	68	14	7	9	1.38
44527739--44527777	11	3.5	11	78	0	51	71	12	7	7	1.29
44534610--44534654	18	2.5	18	92	0	72	37	26	8	26	1.86
44537024--44537112	21	4.1	21	81	5	81	55	8	22	13	1.66
44537041--44537094	21	2.6	21	93	0	90	59	11	20	9	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44546005--44546077	30	2.4	31	86	6	96	20	12	17	49	1.79
44554142--44554189	23	2.1	23	84	0	60	41	2	10	45	1.50
44554921--44554970	15	3.4	15	75	5	57	42	8	0	50	1.32
44554913--44554975	29	2.2	29	97	0	117	46	7	0	46	1.32
44554931--44554975	15	3.1	15	74	6	56	46	4	0	48	1.22
44562368--44562402	6	5.8	6	96	0	61	11	0	2	85	0.69
44564534--44564573	21	1.9	21	84	0	53	55	5	0	40	1.22
44564836--44564871	15	2.4	15	85	0	54	69	0	0	30	0.89
44569352--44569407	29	1.9	29	82	7	69	46	1	14	37	1.55
44572553--44572676	58	2.1	58	98	0	239	41	11	13	33	1.80
44574201--44574255	28	2.0	28	88	0	83	34	3	9	52	1.50
44575016--44575040	12	2.1	12	100	0	50	16	24	8	52	1.70
44575843--44575871	13	2.2	13	100	0	58	41	0	0	58	0.98
44578953--44579010	17	3.7	17	67	21	54	24	1	10	63	1.35
44578941--44579013	29	2.5	30	88	4	121	27	1	10	60	1.39
44579215--44579397	60	3.1	60	77	7	182	53	8	9	29	1.62
44583911--44583949	18	2.0	20	85	9	55	28	12	7	51	1.67
44585168--44585266	17	5.7	17	68	21	62	19	37	2	41	1.63
44585161--44585261	35	2.9	35	93	0	166	18	36	2	41	1.66
44585185--44585249	18	3.7	18	70	12	53	20	36	3	40	1.68
44590395--44590450	2	28.0	2	100	0	112	50	0	0	50	1.00
44590609--44590654	24	1.9	24	95	0	83	21	32	0	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44591163--44591221	30	2.0	30	83	9	77	25	10	3	61	1.44
44596676--44596731	28	2.0	28	92	0	94	58	21	7	12	1.57
44598879--44598911	16	1.9	18	88	11	52	66	3	0	30	1.06
44612973--44613028	24	2.3	25	78	3	69	48	1	8	41	1.45
44616410--44616442	3	11.0	3	93	0	57	3	30	0	66	1.06
44618213--44618270	14	4.1	14	75	4	53	27	31	15	25	1.96
44618891--44618923	15	2.1	16	88	5	50	36	0	0	63	0.95
44620895--44620935	2	21.0	2	87	5	57	51	0	0	48	1.00
44620853--44620987	62	2.2	61	93	1	225	52	4	3	39	1.39
44620907--44621002	48	2.0	48	100	0	192	54	6	4	35	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163