Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  163  of  163  ( 19493 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47027768--47027821
23
2.5
21
70
8
54
75
7
1
14
1.09
47028370--47028402
3
11.0
3
100
0
66
33
0
0
66
0.92
47028742--47028804
31
2.1
30
85
8
83
41
6
4
47
1.50
47031472--47031529
29
2.0
30
82
3
73
37
8
13
39
1.76
47034980--47035062
35
2.3
35
83
4
103
51
20
15
12
1.75
47037069--47037120
25
2.1
25
92
0
86
11
21
9
57
1.62
47038198--47038257
30
2.0
30
96
0
111
50
15
20
15
1.79
47048585--47048621
19
2.0
18
89
5
56
24
0
13
62
1.31
47064278--47064313
6
5.8
6
96
3
63
19
0
50
30
1.48
47069033--47069078
17
2.8
16
78
15
58
69
4
4
21
1.24
47072994--47073493
247
2.0
248
96
0
912
25
12
19
42
1.86
47089028--47089061
2
17.0
2
100
0
68
50
0
0
50
1.00
47101849--47101882
3
11.3
3
100
0
68
67
0
32
0
0.91
47103662--47103723
24
2.8
21
77
20
63
59
1
3
35
1.23
47103676--47103723
26
1.9
25
91
8
80
58
2
4
35
1.29
47107068--47107139
30
2.4
30
83
6
83
48
16
12
22
1.79
47109176--47109214
2
19.5
2
94
0
69
0
46
0
53
1.00
47112601--47112652
18
3.1
18
71
23
58
19
3
13
63
1.44
47120587--47120619
16
1.9
18
88
11
52
54
6
12
27
1.60
47129909--47130056
23
6.5
23
77
9
108
12
25
22
40
1.88
47129978--47130029
22
2.4
22
90
0
77
15
28
21
34
1.94
47135307--47135433
23
5.5
22
75
10
85
11
23
23
40
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47135371--47135424
25
2.2
24
86
3
81
11
22
29
37
1.89
47155998--47156038
21
2.0
20
85
4
55
26
4
0
68
1.10
47158672--47158739
33
2.1
33
94
0
118
45
14
14
25
1.83
47158910--47158939
14
2.1
14
100
0
60
0
0
6
93
0.35
47172019--47172069
25
2.0
25
92
0
84
29
0
3
66
1.09
47176108--47176137
14
2.1
14
93
0
51
53
16
0
30
1.44
47188784--47188816
17
1.9
17
100
0
66
42
6
12
39
1.67
47207825--47207859
17
2.1
17
89
10
54
54
0
2
42
1.15
47226135--47226249
61
1.9
59
81
15
137
43
0
30
25
1.61
47227222--47227277
15
3.7
15
73
7
51
62
1
0
35
1.06
47227234--47227289
29
2.0
29
86
10
80
66
1
0
32
1.03
47239466--47239701
115
2.0
116
95
3
422
50
6
9
33
1.61
47241682--47241719
11
3.3
12
89
10
62
26
36
13
23
1.91
47242947--47242974
7
4.0
7
100
0
56
57
0
0
42
0.99
47245796--47245834
5
7.6
5
88
5
60
76
0
0
23
0.78
47250263--47250365
54
1.9
54
83
0
134
30
17
15
36
1.91
47251737--47251987
125
2.0
125
93
1
434
41
9
15
33
1.79
47251979--47252008
8
3.8
8
90
0
51
36
10
13
40
1.78
47254718--47254750
16
2.1
16
94
0
57
33
6
0
60
1.21
47254776--47254821
20
2.2
20
96
3
83
41
15
15
28
1.87
47256975--47257013
7
5.4
7
84
6
51
5
20
58
15
1.55
47257011--47257212
7
28.9
7
79
5
68
6
8
47
37
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47257004--47257042
14
2.9
13
85
7
51
2
2
56
38
1.27
47257018--47257106
14
6.4
14
73
11
76
11
3
43
41
1.57
47257158--47257253
7
13.7
7
78
12
81
9
3
44
42
1.52
47257233--47257271
13
3.0
13
88
0
60
5
15
48
30
1.66
47257266--47257298
6
5.0
7
85
14
52
0
45
39
15
1.46
47257236--47257289
13
4.2
13
85
0
54
1
25
48
24
1.61
47257266--47257298
13
2.5
13
100
0
66
0
45
39
15
1.46
47257320--47257358
7
5.6
7
90
0
60
0
25
58
15
1.37
47257355--47257441
7
12.4
7
95
0
129
4
0
52
42
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163

The End!