genome.fa.s8.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  105  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29907694--29907933	51	4.7	52	71	16	164	15	28	20	35	1.93
29908481--29908841	106	3.4	106	92	2	600	40	10	24	23	1.86
29909344--29909411	6	11.5	6	77	12	61	0	13	1	85	0.67
29909344--29909411	13	5.2	13	82	10	84	0	13	1	85	0.67
29909344--29909411	22	3.2	20	80	15	73	0	13	1	85	0.67
29909349--29909411	31	2.1	30	90	3	99	0	12	1	85	0.66
29910209--29910247	17	2.5	15	91	8	60	0	0	12	87	0.55
29910212--29910263	12	4.1	12	78	16	52	0	3	11	84	0.74
29910208--29910253	20	2.3	21	81	11	60	0	4	10	84	0.75
29914900--29914986	28	3.1	28	89	0	84	31	8	28	32	1.86
29915060--29915224	30	5.6	29	72	12	104	33	2	26	37	1.70
29915089--29915230	30	4.7	31	75	13	120	34	2	23	39	1.67
29915108--29915224	60	2.0	59	84	1	153	34	2	23	39	1.69
29917044--29917123	6	14.0	6	69	19	55	52	1	1	45	1.16
29917061--29917116	11	5.0	11	84	4	76	55	1	1	41	1.21
29917044--29917125	17	4.8	17	80	4	85	52	1	1	45	1.16
29919522--29919567	20	2.2	20	82	17	51	36	4	13	45	1.63
29926047--29926116	28	2.5	28	85	0	95	30	24	14	31	1.94
29926188--29926341	28	5.5	28	70	7	116	37	24	15	22	1.93
29926149--29926297	56	2.7	56	87	1	201	35	24	18	21	1.96
29926147--29926330	56	3.3	56	84	2	174	35	25	17	21	1.95
29928810--29928838	2	15.0	2	92	7	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29934974--29935043	21	3.3	21	69	0	68	35	32	8	22	1.85
29934948--29935043	42	2.3	42	92	0	156	34	28	10	27	1.89
29934948--29935063	42	2.8	42	86	5	128	35	28	10	25	1.89
29935717--29935772	28	2.0	28	82	0	67	33	21	10	33	1.88
29935808--29936018	28	7.6	28	69	7	133	34	24	17	24	1.96
29935808--29936019	56	3.8	55	79	3	210	33	24	17	24	1.96
29938917--29938958	17	2.4	17	85	14	59	76	0	0	23	0.79
29938918--29938999	19	4.4	19	76	8	80	65	3	1	29	1.17
29942824--29942909	40	2.1	40	85	6	111	39	16	24	19	1.91
29942885--29943260	41	9.2	41	82	4	352	31	22	28	17	1.96
29942925--29943260	123	2.7	122	84	4	442	29	22	29	18	1.97
29948651--29948930	43	6.6	43	82	6	329	25	19	27	28	1.99
29948651--29948933	86	3.3	85	85	5	376	24	19	27	28	1.98
29948651--29948931	129	2.2	128	84	5	363	24	19	27	28	1.98
29949451--29949532	2	43.5	2	71	16	50	58	1	1	39	1.14
29949448--29949566	22	5.3	22	70	23	81	59	1	1	36	1.17
29949914--29949941	13	2.2	13	100	0	56	46	0	7	46	1.30
29950219--29950265	19	2.4	19	82	7	58	42	0	0	57	0.98
29950393--29950431	17	2.3	17	86	8	53	23	2	5	69	1.21
29950549--29950580	15	2.0	17	88	11	50	31	6	3	59	1.38
29951220--29951249	14	2.1	14	93	0	51	76	6	6	10	1.15
29951210--29951253	18	2.4	18	80	0	52	72	6	11	9	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29955047--29955084	17	2.2	17	86	9	51	50	5	2	42	1.39
29956166--29956196	15	2.1	15	93	0	53	16	16	19	48	1.81
29959484--29959524	20	2.0	20	100	0	82	29	24	17	29	1.97
29970041--29970080	21	1.9	21	89	0	62	57	0	12	30	1.36
29970088--29970128	21	2.0	21	90	0	64	43	7	12	36	1.70
29972776--29972824	21	2.3	21	89	0	80	55	10	22	12	1.66
29983394--29983466	23	3.3	22	75	7	67	78	2	2	16	0.99
29983397--29983437	18	2.5	16	88	11	57	85	0	2	12	0.70
29984614--29984675	27	2.2	28	88	11	92	54	9	3	32	1.49
29992974--29993015	8	4.8	9	85	14	52	47	11	0	40	1.40
29993803--29993862	21	3.0	21	78	7	63	0	55	0	45	0.99
29993856--29993897	18	2.3	18	87	0	57	9	11	7	71	1.31
29994381--29994437	27	2.1	28	86	3	80	42	5	8	43	1.58
29994535--29994566	17	2.0	17	88	11	50	59	3	6	31	1.38
29994802--29994844	22	1.9	23	86	13	63	65	4	4	25	1.32
29995586--29995641	22	2.4	24	82	14	73	35	3	0	60	1.14
29995603--29995686	18	4.6	19	70	15	61	35	1	2	60	1.17
29995634--29995695	28	2.3	27	81	13	65	33	0	3	62	1.11
29998291--29998341	16	3.2	16	91	0	84	54	13	9	21	1.67
30000806--30000864	14	4.0	14	77	18	66	47	0	0	52	1.00
30000807--30000855	17	3.1	17	82	8	59	44	0	0	55	0.99
30002113--30002137	13	1.9	13	100	0	50	28	8	8	56	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30002593--30002638	20	2.2	21	88	3	67	32	2	2	63	1.19
30002585--30002639	10	5.3	10	78	12	58	34	1	1	61	1.17
30004145--30004202	18	3.4	18	88	6	77	29	8	24	37	1.85
30007072--30007113	22	2.0	22	86	9	61	47	2	4	45	1.36
30008972--30009019	21	2.3	21	85	3	62	58	8	22	10	1.58
30009743--30009781	17	2.3	17	86	8	53	23	2	5	69	1.21
30010045--30010102	27	2.1	28	87	3	82	46	6	6	39	1.57
30012897--30012971	24	3.1	24	94	0	123	26	12	6	54	1.61
30014899--30014973	24	3.1	24	88	0	114	24	13	8	54	1.65
30016416--30016473	29	2.0	29	93	0	98	32	29	15	22	1.95
30021323--30021348	13	2.0	13	100	0	52	46	7	15	30	1.74
30022655--30022712	22	2.6	22	81	13	75	36	5	0	58	1.20
30022668--30022755	27	3.3	27	72	13	83	29	3	2	64	1.22
30022672--30022747	16	4.3	17	74	21	59	31	2	2	63	1.22
30029238--30029279	8	4.8	9	85	14	52	47	11	0	40	1.40
30030075--30030109	11	3.3	11	88	8	54	0	51	0	48	1.00
30030068--30030109	21	2.0	21	90	0	66	0	57	0	42	0.99
30030103--30030144	18	2.3	18	87	0	57	9	11	4	73	1.22
30030105--30030151	18	2.6	18	80	6	51	10	10	4	74	1.20
30030629--30030683	27	2.2	26	80	9	60	43	5	10	40	1.63
30030782--30030813	17	2.0	17	88	11	50	59	3	6	31	1.38
30031824--30031894	24	2.9	23	75	10	61	35	2	2	59	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30031851--30031951	24	3.8	27	74	14	77	35	0	0	62	1.09
30034498--30034528	16	1.9	16	100	0	62	51	9	12	25	1.70
30040303--30040343	15	2.5	17	88	11	59	31	4	21	41	1.74
30040303--30040351	18	2.9	18	85	8	59	30	8	22	38	1.83
30042606--30042644	17	2.2	18	86	4	53	35	2	0	61	1.10
30042654--30042696	22	1.9	23	86	13	63	25	4	4	65	1.32
30042760--30042798	17	2.3	17	86	8	53	23	2	5	69	1.21
30043061--30043118	27	2.1	28	87	3	82	44	6	5	43	1.53
30043603--30043645	18	2.4	18	88	0	59	69	6	13	9	1.35
30043644--30043695	18	2.8	18	80	13	61	34	0	63	1	1.06
30050161--30050203	21	2.0	21	100	0	86	27	4	9	58	1.49
30050681--30050737	22	2.5	22	78	13	62	33	3	1	61	1.23
30050715--30050837	29	4.4	28	72	17	96	31	3	1	63	1.20
30050715--30050808	27	3.3	31	74	18	87	34	2	1	62	1.14
30050713--30050815	18	5.5	18	73	16	77	32	1	0	65	1.11
30050769--30050808	13	3.2	13	89	3	55	35	0	0	65	0.93
30050761--30050813	19	2.5	22	88	11	85	33	0	0	66	0.92
30051506--30051548	22	2.0	22	86	9	61	27	11	0	60	1.31
30055786--30055810	11	2.3	11	100	0	50	36	16	0	48	1.46
30058657--30058709	26	2.0	26	82	7	63	39	18	11	30	1.86
30063274--30063366	23	4.0	23	85	0	123	34	3	13	48	1.59
30063437--30064142	23	30.7	23	86	0	908	34	5	14	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30063204--30063527	161	2.0	161	89	1	497	33	8	13	44	1.74
30068298--30068434	23	6.0	23	79	3	141	35	6	12	45	1.68
30074996--30075028	16	2.1	16	88	5	50	3	6	39	51	1.42
30075057--30075104	24	2.0	25	84	8	64	27	4	25	43	1.72
30075624--30075843	50	4.4	50	71	4	122	27	18	18	35	1.95
30075662--30075896	101	2.3	101	84	0	290	28	19	17	34	1.94
30075649--30075826	50	3.6	50	71	5	153	25	20	18	35	1.95
30076738--30076769	5	6.8	5	96	3	50	0	12	0	87	0.54
30076729--30076769	13	3.0	13	83	13	55	2	12	0	85	0.70
30079724--30079867	34	4.2	34	79	3	155	36	31	13	19	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163