genome.fa.s8.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  124  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34295082--34295130	24	2.0	24	84	11	64	22	6	10	61	1.50
34296344--34296401	30	2.0	31	83	10	77	56	5	3	34	1.38
34296657--34296682	13	2.0	13	100	0	52	61	7	0	30	1.24
34304830--34305042	105	2.0	104	87	0	300	38	24	8	28	1.85
34305015--34305104	30	2.9	31	83	9	121	40	15	10	34	1.81
34305680--34305730	27	1.9	27	96	4	95	37	11	3	47	1.59
34306028--34306065	18	2.2	18	86	13	53	50	2	18	28	1.61
34307798--34307831	16	2.1	17	88	5	52	67	0	0	32	0.91
34309758--34309797	20	2.0	20	100	0	80	45	10	15	30	1.78
34312421--34312495	37	2.0	37	92	0	123	25	12	32	30	1.92
34314822--34314875	23	2.6	22	81	18	64	44	0	0	55	0.99
34323904--34323953	25	2.0	26	84	4	66	46	2	2	50	1.24
34330867--34330900	2	17.0	2	100	0	68	50	0	0	50	1.00
34333227--34333777	39	14.0	39	77	4	442	26	18	28	26	1.98
34345614--34345653	18	2.0	20	86	13	57	55	10	0	35	1.34
34350053--34350092	21	1.9	21	85	10	55	17	10	42	30	1.82
34353791--34353858	24	2.9	23	76	8	75	44	0	2	52	1.16
34353788--34353916	61	2.1	62	88	1	188	43	1	3	51	1.29
34360261--34360327	33	2.0	33	91	5	109	34	0	8	56	1.31
34361519--34361550	15	2.1	16	94	5	57	50	0	0	50	1.00
34362576--34362644	12	5.5	12	74	14	59	34	2	0	62	1.10
34362576--34362646	26	2.8	26	93	2	117	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34363899--34363928	15	2.0	15	100	0	60	53	13	0	33	1.40
34364496--34364556	32	2.0	30	84	12	79	47	1	6	44	1.39
34377169--34377211	21	2.0	21	100	0	86	41	9	23	25	1.84
34386465--34386644	82	2.2	82	86	4	247	33	26	18	21	1.96
34387171--34387219	2	24.5	2	95	0	89	51	2	0	46	1.12
34388716--34388763	21	2.3	21	77	0	51	47	10	14	27	1.76
34388916--34389003	23	3.8	23	80	4	97	30	11	17	40	1.84
34388916--34389004	47	1.9	46	84	6	117	30	11	16	41	1.84
34397530--34397578	25	2.0	25	87	0	71	38	26	12	22	1.89
34398880--34398928	8	6.0	8	82	2	53	59	0	0	40	0.98
34399431--34399489	31	1.9	31	85	0	82	20	3	5	71	1.20
34399827--34399881	18	3.1	18	74	7	58	52	0	5	41	1.24
34401658--34401757	43	2.4	42	83	9	123	14	23	16	47	1.82
34409537--34409583	23	2.1	23	84	7	62	21	6	4	68	1.30
34412599--34412664	28	2.4	28	76	5	71	27	15	16	40	1.88
34415289--34415316	6	4.7	6	100	0	56	14	32	0	53	1.41
34417240--34417268	14	2.0	15	93	6	51	44	0	0	55	0.99
34423220--34423334	58	2.0	58	89	3	178	47	15	0	36	1.46
34425109--34425148	21	1.9	21	85	10	55	37	12	0	50	1.41
34425119--34425161	21	2.0	21	86	0	59	34	13	2	48	1.56
34425330--34425372	3	14.3	3	100	0	86	67	0	0	32	0.91
34427342--34427863	59	8.8	59	84	5	545	34	3	29	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34427479--34427821	30	11.5	29	69	23	180	34	2	29	34	1.69
34427693--34427767	38	2.0	38	85	12	102	32	1	28	38	1.65
34427658--34427803	67	2.2	67	94	1	256	31	1	30	36	1.66
34428894--34428950	3	18.3	3	76	7	51	38	1	5	54	1.33
34428876--34428929	16	3.4	16	77	10	65	40	3	1	53	1.29
34429649--34429679	16	1.9	16	93	0	53	58	0	0	41	0.98
34429657--34429698	11	3.9	11	81	3	50	54	4	0	40	1.21
34430043--34430623	196	2.9	198	88	2	851	19	23	21	35	1.95
34435841--34435941	30	3.4	30	69	24	88	36	3	27	31	1.75
34435786--34436078	59	5.0	59	82	4	333	35	2	29	32	1.71
34435790--34435951	30	5.5	29	65	22	79	37	2	27	32	1.70
34435933--34436020	30	2.9	30	79	15	101	31	0	30	37	1.58
34435801--34436080	119	2.4	118	85	3	366	34	2	28	33	1.72
34437094--34437168	3	24.0	3	80	8	78	37	2	2	57	1.27
34437094--34437168	13	6.0	12	80	9	78	37	2	2	57	1.27
34437094--34437153	16	3.8	16	79	14	70	36	3	1	58	1.25
34437104--34437176	9	7.8	9	83	7	74	39	1	2	56	1.22
34437868--34437930	16	3.8	17	75	6	67	55	4	0	39	1.21
34437871--34437923	27	2.0	27	84	0	70	56	5	0	37	1.23
34438257--34438310	20	2.7	20	79	0	63	33	11	25	29	1.91
34438499--34438551	20	2.7	20	84	0	70	30	9	30	30	1.89
34444104--34444893	219	3.6	217	85	3	970	37	20	12	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34444104--34444939	218	3.9	217	85	3	990	37	20	12	29	1.90
34444104--34444939	437	1.9	430	83	5	1083	37	20	12	29	1.90
34450145--34450244	19	5.2	19	79	2	92	25	22	18	35	1.96
34461684--34461873	41	4.7	40	86	5	129	38	17	24	18	1.92
34461717--34461910	41	4.8	41	91	0	282	38	17	27	16	1.91
34464336--34464399	26	2.4	27	82	10	78	53	21	14	10	1.71
34464681--34464734	22	2.5	22	84	3	65	40	14	22	22	1.90
34464731--34464788	22	2.7	22	78	2	64	20	22	37	18	1.94
34465531--34465605	31	2.4	30	82	8	89	38	14	2	44	1.60
34467450--34467482	16	2.1	16	100	0	66	33	42	0	24	1.55
34473095--34473132	16	2.2	18	90	9	62	39	0	0	60	0.97
34477043--34477104	27	2.3	27	83	8	72	45	1	3	50	1.27
34477055--34477112	6	10.2	6	80	17	61	48	1	0	50	1.11
34477055--34477097	17	2.6	17	96	3	79	41	2	0	55	1.12
34477053--34477110	23	2.5	24	77	5	59	48	1	0	50	1.11
34477045--34477110	11	5.9	11	75	10	53	46	1	1	50	1.20
34477045--34477110	17	3.9	17	80	4	71	46	1	1	50	1.20
34478164--34478194	16	1.9	16	93	0	53	19	19	19	41	1.90
34478928--34479186	29	8.9	29	69	20	150	34	29	2	33	1.70
34478941--34479191	58	4.3	57	85	7	296	34	29	2	33	1.71
34478939--34479186	116	2.1	115	86	7	342	35	28	2	34	1.69
34478939--34479228	58	5.0	57	81	9	259	33	30	3	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34491205--34491864	76	8.8	75	86	6	817	32	15	18	33	1.93
34491205--34491864	153	4.4	152	85	5	855	32	15	18	33	1.93
34491205--34491864	229	2.9	225	86	5	851	32	15	18	33	1.93
34491653--34491858	64	3.0	64	81	12	250	32	15	17	34	1.92
34491577--34491858	140	2.0	140	95	0	501	32	15	17	34	1.92
34492160--34492279	6	20.2	6	78	17	108	45	2	0	51	1.14
34492150--34492262	31	3.8	31	89	9	164	41	2	0	54	1.20
34492150--34492277	11	10.9	11	73	14	78	45	2	0	51	1.19
34493328--34493358	16	1.9	16	93	0	53	19	19	19	41	1.90
34493850--34494165	163	1.9	163	92	0	524	25	18	12	43	1.86
34494285--34494423	28	4.8	28	68	18	79	35	28	3	33	1.75
34494257--34494567	58	5.4	58	88	3	387	33	29	3	33	1.74
34497482--34497533	25	2.1	24	82	10	61	55	5	1	36	1.35
34497727--34497799	27	2.7	27	97	0	137	24	34	24	16	1.95
34509061--34509117	17	3.4	17	90	7	89	40	0	3	56	1.17
34509747--34509778	15	2.1	15	100	0	64	56	0	0	43	0.99
34510830--34511160	30	11.3	29	79	9	261	36	25	3	34	1.72
34510830--34511062	59	3.9	59	82	11	282	37	25	2	33	1.70
34511399--34511692	97	3.0	97	89	1	437	28	17	16	38	1.91
34516568--34516618	18	2.8	18	85	8	59	25	3	1	68	1.17
34518573--34518778	108	1.9	108	90	0	331	41	15	9	33	1.79
34520521--34520579	5	12.0	5	78	10	50	6	0	15	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34520999--34521219	46	5.1	42	75	12	161	25	16	25	31	1.97
34521119--34521220	42	2.5	40	80	7	125	26	14	30	28	1.95
34521215--34521440	39	5.6	39	79	9	238	25	15	29	28	1.96
34521152--34521277	60	2.0	63	86	7	179	23	13	35	26	1.92
34521120--34521320	102	2.0	102	89	2	305	25	14	32	27	1.95
34521219--34521443	82	2.8	82	86	4	330	25	16	29	28	1.96
34521708--34522373	49	13.6	49	78	3	430	19	24	16	38	1.92
34521744--34522373	98	6.4	98	76	3	514	20	24	16	38	1.93
34521824--34522358	195	2.7	197	79	5	476	20	24	15	39	1.92
34523349--34523408	6	9.8	6	85	7	77	0	16	0	83	0.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163