genome.fa.s8.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  150  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41190150--41190200	25	2.1	23	89	7	75	64	5	0	29	1.17
41191015--41191075	10	6.6	9	80	14	61	55	3	3	37	1.32
41191015--41191075	19	3.3	18	80	13	61	55	3	3	37	1.32
41191165--41191211	24	1.9	24	82	4	58	23	8	6	61	1.48
41192277--41192519	120	2.0	120	97	0	459	49	11	11	27	1.73
41203168--41203229	30	2.1	30	87	0	88	30	16	16	37	1.90
41206270--41206388	22	5.4	22	73	9	89	52	8	18	20	1.70
41206270--41206388	44	2.7	43	73	10	105	52	8	18	20	1.70
41206352--41206410	22	2.6	23	81	8	75	54	10	15	20	1.70
41212236--41212325	41	2.2	41	89	0	135	23	21	33	22	1.97
41218858--41219022	56	3.0	56	78	3	165	18	16	36	27	1.93
41219533--41219630	40	2.5	40	86	0	133	38	22	16	22	1.92
41219706--41219841	29	4.7	27	76	9	85	25	13	16	43	1.86
41219780--41219833	17	3.5	17	66	23	55	27	11	20	40	1.86
41222666--41222690	2	12.5	2	100	0	50	52	0	0	48	1.00
41227975--41228021	23	2.0	23	88	8	69	44	4	2	48	1.34
41236926--41238108	596	2.0	580	96	2	2159	39	8	10	41	1.70
41238669--41238695	11	2.5	11	100	0	54	59	0	0	40	0.98
41244592--41244643	21	2.7	19	82	14	54	38	3	3	53	1.37
41246239--41246539	30	10.2	28	74	12	137	37	23	5	33	1.77
41246283--41246596	30	10.6	29	77	7	256	36	24	6	32	1.81
41246283--41246596	59	5.3	59	78	5	267	36	24	6	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41246244--41246610	89	4.1	90	75	7	281	35	24	5	34	1.79
41248531--41248574	16	2.8	17	83	10	58	45	2	0	52	1.13
41254085--41254124	3	13.3	3	100	0	80	32	0	0	67	0.91
41262108--41262170	28	2.2	28	85	0	81	49	6	3	41	1.44
41262598--41262628	2	15.5	2	100	0	62	48	0	0	51	1.00
41264477--41264557	39	2.0	40	88	4	119	44	8	14	32	1.76
41265285--41265310	12	2.2	12	100	0	52	42	0	15	42	1.47
41267032--41267108	37	2.1	38	85	7	104	35	1	3	59	1.24
41274200--41274229	3	10.0	3	100	0	60	33	0	0	66	0.92
41275434--41276140	379	1.9	379	90	0	1137	36	13	14	34	1.87
41279084--41279140	27	2.2	25	84	9	78	40	3	1	54	1.28
41279104--41279140	14	2.8	14	88	8	51	43	0	2	54	1.14
41284004--41284136	70	1.9	67	83	7	169	40	8	5	45	1.56
41284326--41284609	143	2.0	142	97	0	541	42	17	11	28	1.83
41288606--41288687	33	2.5	34	90	4	116	42	2	0	54	1.13
41288609--41288681	25	3.0	25	75	18	64	39	2	0	57	1.13
41288616--41288709	17	5.8	17	67	14	63	41	2	0	56	1.11
41288625--41288720	33	3.0	32	84	9	115	43	2	0	54	1.12
41294998--41295044	20	2.3	20	82	17	53	55	2	6	36	1.37
41303660--41303720	30	2.0	30	83	0	77	26	24	21	27	1.99
41305804--41305867	5	12.8	5	100	0	128	79	0	0	20	0.73
41314174--41314281	12	9.3	12	75	8	64	69	14	5	10	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41314160--41314245	44	2.0	44	84	9	113	67	16	4	11	1.38
41314148--41314252	44	2.4	44	80	10	110	67	15	4	12	1.38
41314177--41314308	56	2.4	54	79	13	135	70	13	5	10	1.32
41314295--41314364	21	3.3	21	81	14	74	68	20	4	7	1.30
41314304--41314353	22	2.2	22	89	10	75	72	16	4	8	1.24
41314304--41314364	20	2.8	22	85	11	74	68	19	4	6	1.30
41314977--41315013	18	2.0	20	84	10	51	62	5	5	27	1.39
41315186--41315240	22	2.4	23	84	6	67	30	1	12	54	1.48
41323916--41323940	2	12.5	2	100	0	50	52	0	0	48	1.00
41325080--41325187	50	2.1	50	94	1	189	33	25	10	31	1.89
41325105--41325215	50	2.2	50	80	3	125	40	21	7	30	1.80
41326069--41326111	21	2.1	21	86	4	61	25	16	16	41	1.88
41328443--41328508	33	1.9	36	84	9	93	53	6	31	9	1.57
41329534--41329606	23	3.2	22	88	7	110	12	26	23	38	1.90
41329571--41329645	39	1.9	39	91	0	123	12	22	21	44	1.85
41329605--41329698	23	4.0	23	75	16	86	11	25	19	43	1.84
41330546--41330638	28	3.2	28	71	23	84	30	2	31	36	1.70
41330526--41330655	58	2.2	59	90	1	208	32	2	31	33	1.71
41330534--41330626	30	3.2	30	71	22	97	34	2	27	35	1.69
41330565--41330657	29	3.2	29	71	23	86	35	1	30	33	1.65
41331751--41331859	15	6.7	16	67	14	71	34	2	4	57	1.33
41331758--41331815	27	2.1	27	81	6	64	34	5	5	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41333986--41334010	13	1.9	13	100	0	50	40	0	4	56	1.18
41337958--41338006	23	2.1	23	88	3	71	73	4	8	14	1.21
41338822--41338864	19	2.3	19	84	8	52	58	4	0	37	1.19
41339427--41339613	103	1.8	103	88	4	288	25	26	13	34	1.93
41339427--41339655	103	2.2	104	82	6	275	24	24	11	38	1.89
41340303--41340347	4	10.8	4	82	17	56	75	0	4	20	0.97
41340302--41340358	8	6.6	8	78	13	51	78	0	3	17	0.88
41343203--41343246	21	2.1	21	82	0	52	27	15	15	40	1.88
41344776--41344824	23	2.1	23	84	3	62	75	4	6	14	1.14
41345640--41345682	19	2.3	19	84	8	52	58	4	0	37	1.19
41368942--41368976	18	1.9	18	88	0	52	65	0	14	20	1.26
41369083--41369125	22	1.9	23	85	4	61	34	6	4	53	1.49
41373287--41373440	56	2.8	56	82	0	191	31	5	11	50	1.62
41380036--41380077	21	2.0	21	90	0	66	35	11	16	35	1.86
41382685--41382943	129	2.0	129	100	0	518	23	13	23	38	1.90
41384782--41384824	22	2.0	22	95	0	77	37	0	23	39	1.55
41389938--41389973	14	2.6	14	81	0	54	47	13	2	36	1.58
41389990--41390054	32	2.0	32	100	0	130	27	12	15	44	1.82
41395738--41395767	2	15.5	2	93	6	53	53	0	0	46	1.00
41399139--41399179	18	2.3	18	87	4	57	26	17	14	41	1.88
41399335--41399384	23	2.1	23	82	10	57	62	2	2	34	1.18
41399804--41399842	16	2.4	16	86	0	51	12	20	17	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41400873--41400944	35	2.1	35	97	0	135	51	5	8	34	1.55
41407692--41407763	29	2.5	30	80	15	96	58	0	4	37	1.18
41410492--41410533	15	2.9	15	78	3	50	59	0	0	40	0.97
41410608--41410674	29	2.3	31	76	10	77	58	2	7	31	1.41
41410677--41410715	19	2.1	19	95	0	69	43	12	10	33	1.77
41414727--41414758	10	3.3	10	91	8	57	56	0	0	43	0.99
41414727--41414787	33	1.9	31	86	6	86	52	0	0	47	1.00
41429237--41429274	14	2.8	14	84	4	51	44	0	0	55	0.99
41437515--41437550	14	2.4	15	86	13	56	55	0	0	44	0.99
41455134--41455245	55	2.0	55	98	0	215	37	13	16	33	1.87
41458977--41459004	10	2.8	10	100	0	56	0	32	0	67	0.91
41463432--41463595	88	1.9	87	87	3	240	40	13	16	29	1.87
41466070--41466113	22	2.0	22	86	4	61	52	0	2	45	1.13
41473082--41473117	2	18.0	2	100	0	72	0	0	50	50	1.00
41478585--41478663	17	4.5	17	67	22	56	56	2	0	40	1.12
41482352--41482376	6	4.2	6	100	0	50	68	16	0	16	1.22
41482998--41483046	2	24.5	2	100	0	98	0	48	0	51	1.00
41489885--41489947	24	2.5	26	80	12	78	68	3	0	28	1.05
41489906--41489962	30	1.9	30	82	7	71	66	3	3	26	1.24
41490184--41490233	21	2.4	22	83	6	68	74	4	0	22	0.99
41490267--41490337	15	4.7	15	71	22	51	64	7	1	26	1.27
41490491--41490524	15	2.3	15	90	5	52	70	2	0	26	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41493377--41493422	19	2.4	19	82	7	58	30	0	6	63	1.20
41493366--41493421	28	2.0	28	85	0	76	37	0	5	57	1.22
41497965--41498010	11	4.2	11	82	0	56	17	4	10	67	1.37
41498565--41498623	21	2.8	21	71	0	55	33	27	15	23	1.95
41506490--41506529	15	2.8	15	88	7	57	67	2	0	30	1.04
41506969--41507020	27	1.9	27	92	0	86	19	28	30	21	1.97
41511052--41511090	21	1.9	19	90	10	60	48	0	2	48	1.15
41519177--41519522	188	1.8	187	86	3	498	39	17	17	25	1.91
41521075--41521112	16	2.4	17	87	12	55	50	0	0	50	1.00
41521501--41521538	16	2.4	17	87	12	55	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163