genome.fa.s8.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  109  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30953590--30954620	92	11.1	92	93	2	1686	32	19	15	32	1.93
30953590--30954764	184	6.2	184	92	4	1805	32	19	15	32	1.93
30953590--30954764	276	4.2	276	92	3	1832	32	19	15	32	1.93
30954467--30954491	12	2.1	12	100	0	50	44	24	0	32	1.54
30954376--30954583	104	2.0	103	95	0	371	33	21	14	31	1.93
30954604--30954637	17	2.0	17	100	0	68	17	17	17	47	1.84
30962996--30963277	147	1.9	146	85	5	390	38	5	23	32	1.78
30963212--30963326	59	1.9	60	84	5	153	40	4	23	32	1.74
30962955--30963296	147	2.3	147	80	4	372	38	6	23	31	1.80
30963201--30963336	59	2.3	58	76	8	141	40	5	22	31	1.76
30963319--30963642	30	10.9	30	76	12	276	33	4	26	36	1.75
30963353--30963642	117	2.4	121	83	7	382	33	4	25	36	1.75
30963318--30963642	59	5.5	59	76	10	272	33	4	26	36	1.75
30964822--30964862	21	2.0	21	90	0	64	41	4	2	51	1.36
30965601--30965679	17	4.6	17	71	3	59	54	7	1	36	1.37
30965736--30965772	13	2.9	13	92	4	58	27	13	0	59	1.35
30969716--30970080	50	7.3	50	66	10	217	24	20	20	34	1.96
30969658--30970767	100	11.0	100	80	6	510	26	18	18	36	1.94
30970005--30971053	102	10.4	101	82	3	1024	28	17	17	36	1.93
30970522--30970684	50	3.3	50	64	13	136	26	20	16	35	1.94
30970102--30971018	405	2.3	405	85	3	1211	28	17	17	37	1.92
30973266--30973296	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30977024--30977072	25	2.0	23	84	7	62	71	6	2	20	1.18
30977032--30977084	24	2.3	23	76	20	56	71	5	0	22	1.06
30977033--30977085	25	2.1	25	83	13	65	69	5	0	24	1.09
30982399--30982424	2	13.0	2	100	0	52	50	0	0	50	1.00
30984258--30984322	29	2.3	28	84	7	78	50	9	10	29	1.68
30984452--30984517	31	2.2	30	83	8	80	27	9	18	45	1.79
30991550--30991602	20	2.8	19	78	10	56	52	1	0	45	1.11
30993955--30993992	19	2.0	19	85	10	51	47	2	0	50	1.15
30995974--30996053	17	4.9	17	74	9	67	36	2	6	55	1.39
30995960--30996015	28	2.0	29	89	3	87	37	1	3	57	1.27
30998004--30998086	29	2.9	29	85	3	96	39	24	4	31	1.76
30998058--30998373	59	5.4	59	85	4	408	33	28	2	35	1.72
30998032--30998337	29	10.5	28	69	18	171	33	27	2	35	1.71
30998354--30998405	28	1.9	27	84	7	70	30	30	11	26	1.92
30998354--30998413	28	2.1	28	81	6	68	35	30	10	25	1.88
31006919--31006995	30	2.5	31	79	6	86	44	2	16	36	1.62
31007048--31007199	30	5.2	30	77	6	98	38	4	26	30	1.77
31007075--31007199	30	4.3	29	80	9	137	37	4	26	32	1.75
31009384--31009413	3	10.0	3	92	0	51	3	0	30	66	1.07
31010742--31010776	2	17.5	2	100	0	70	48	0	0	51	1.00
31011881--31011935	14	3.6	15	72	18	51	65	0	1	32	1.03
31013206--31013230	11	2.3	11	100	0	50	28	36	8	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31014880--31014945	30	2.2	30	88	0	96	39	19	12	28	1.88
31015035--31015101	30	2.2	31	84	7	84	49	17	11	20	1.79
31015572--31015606	18	1.9	18	94	0	61	42	14	14	28	1.84
31015797--31015857	29	2.1	31	78	12	74	22	34	0	42	1.54
31016396--31016433	19	2.0	19	94	0	67	34	5	23	36	1.78
31017243--31017314	30	2.4	31	80	2	83	20	8	18	52	1.70
31017588--31017629	20	2.0	21	86	4	59	35	7	7	50	1.57
31017588--31017629	21	2.0	21	86	9	59	35	7	7	50	1.57
31017625--31017691	33	2.1	33	83	8	84	20	2	1	74	1.03
31019211--31019298	27	3.3	27	88	0	122	20	39	4	35	1.73
31022712--31022760	18	2.8	17	75	6	53	34	24	0	40	1.55
31026209--31026326	49	2.4	49	85	1	157	39	19	5	34	1.76
31026299--31026337	10	3.8	10	89	3	60	38	20	2	38	1.66
31026329--31026461	23	5.8	23	84	5	171	48	12	2	36	1.54
31026870--31027054	36	4.9	36	80	11	190	36	24	9	29	1.86
31026884--31026976	45	2.1	44	95	2	168	36	31	7	24	1.83
31029746--31029809	33	2.0	31	90	6	101	37	21	3	37	1.70
31031588--31031656	11	5.8	12	72	14	63	42	2	1	53	1.24
31031588--31031692	17	6.0	17	71	18	65	43	2	2	50	1.31
31031573--31031656	42	2.0	42	86	4	116	41	3	2	52	1.31
31031588--31031656	6	11.7	6	73	14	63	42	2	1	53	1.24
31032317--31032366	24	2.1	24	96	0	91	36	4	14	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31033544--31033719	29	5.9	30	71	11	123	30	25	7	36	1.83
31033552--31033719	59	2.8	60	86	6	211	30	24	7	37	1.84
31033544--31033878	30	11.4	30	67	18	147	32	26	5	36	1.78
31033622--31033889	58	4.6	58	81	11	273	31	27	4	37	1.76
31033622--31033893	116	2.3	117	83	8	340	31	27	4	37	1.75
31033670--31033892	58	3.8	58	87	6	308	32	27	3	36	1.73
31045924--31046745	199	4.1	199	84	4	1075	36	20	22	21	1.96
31047122--31047169	17	2.7	17	83	6	51	41	4	4	50	1.41
31047142--31047210	6	11.7	6	72	14	54	43	2	1	52	1.25
31047142--31047246	17	6.0	17	69	18	56	45	2	2	48	1.32
31047127--31047206	42	1.9	42	84	5	108	43	3	2	50	1.33
31049070--31049379	29	10.6	28	67	19	118	33	26	2	37	1.70
31049053--31049379	30	11.2	28	68	20	111	33	27	2	37	1.71
31049070--31049373	59	5.2	55	79	11	238	33	25	2	37	1.70
31049065--31049379	117	2.7	116	83	9	372	33	26	2	37	1.71
31049125--31049373	59	4.3	60	84	8	302	34	26	2	36	1.68
31050947--31051001	28	2.0	28	96	0	101	23	30	16	29	1.96
31058892--31058971	24	3.3	24	92	0	133	25	18	25	31	1.98
31060748--31060954	109	1.9	109	91	4	337	37	15	14	32	1.88
31061358--31061394	19	1.9	19	88	0	56	75	2	2	18	1.04
31061594--31061638	23	2.0	23	81	0	54	40	2	2	55	1.24
31061605--31061690	17	5.1	17	88	0	118	36	1	3	59	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31061596--31061698	6	17.7	6	74	8	61	37	1	3	56	1.29
31063439--31063505	30	2.2	30	89	0	98	38	20	4	35	1.73
31063499--31063675	58	3.0	58	77	7	171	37	27	2	32	1.69
31063499--31063675	29	6.1	30	77	11	136	37	27	2	32	1.69
31063430--31063735	29	10.4	29	73	13	128	36	25	3	33	1.75
31067716--31067860	78	1.9	77	80	12	172	64	13	13	9	1.50
31068674--31068713	17	2.3	18	95	4	73	82	0	10	7	0.84
31068680--31068740	21	3.1	21	79	9	58	75	0	18	6	1.01
31069796--31070372	50	11.7	50	74	5	226	33	17	29	18	1.94
31069774--31070170	98	4.0	99	76	5	349	32	17	30	18	1.94
31069683--31070247	148	3.8	145	75	9	473	34	17	30	18	1.94
31069820--31070345	196	2.7	195	78	5	481	34	16	30	18	1.94
31070633--31071049	39	10.7	39	71	7	231	26	32	17	24	1.97
31070672--31071070	78	5.1	78	77	7	371	25	31	17	25	1.97
31070629--31071161	117	4.6	114	73	10	359	26	32	17	24	1.97
31070672--31071088	156	2.7	154	78	6	428	25	31	17	25	1.97
31070905--31071127	39	5.7	39	72	7	141	25	32	18	22	1.97
31071652--31071694	17	2.6	17	89	10	63	37	0	4	58	1.19
31073473--31073931	30	15.6	29	74	14	115	35	25	3	36	1.72
31073485--31073814	60	5.6	58	79	8	247	36	23	2	37	1.68
31073537--31073901	29	12.4	29	73	14	205	36	24	3	36	1.71
31073537--31074028	30	16.9	29	73	6	262	35	25	3	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31073626--31073920	59	5.1	59	83	5	332	35	26	3	34	1.73
31073707--31073959	29	8.8	28	70	13	101	33	28	3	34	1.76
31074208--31074248	19	2.2	19	86	8	57	21	14	14	48	1.80
31076188--31076237	17	2.8	18	82	11	59	8	0	10	82	0.86
31076188--31076241	26	2.0	27	86	10	76	7	0	11	81	0.87
31076415--31076518	48	2.1	48	83	1	127	18	20	19	42	1.90
31076441--31076902	49	9.4	49	81	1	460	20	24	14	39	1.91
31076441--31076910	147	3.2	148	82	2	534	20	25	14	39	1.91
31076804--31077049	136	1.8	136	81	7	311	19	25	17	38	1.93
31076914--31077080	50	3.3	49	83	3	192	22	24	19	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163