genome.fa.s8.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  43  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10903031--10903093	28	2.2	28	83	5	74	26	11	28	33	1.91
10903045--10903265	29	7.6	28	68	14	90	35	6	28	29	1.83
10903185--10903355	29	5.8	30	69	20	112	33	4	30	30	1.78
10903068--10903389	117	2.8	116	81	2	369	36	5	29	29	1.79
10903049--10903381	59	5.7	59	82	3	370	35	5	28	30	1.80
10903341--10903477	30	4.5	30	82	9	163	37	2	26	33	1.71
10905363--10905414	12	4.4	12	80	4	61	57	1	1	38	1.21
10907311--10907443	55	2.4	56	87	3	182	47	14	9	29	1.74
10914373--10914505	55	2.4	56	87	3	182	47	14	9	29	1.74
10921385--10921517	55	2.4	56	87	3	182	47	14	9	29	1.74
10928443--10928575	55	2.4	56	87	3	182	47	14	9	29	1.74
10929328--10929375	24	2.0	25	84	12	64	52	4	0	43	1.20
10934361--10934414	28	2.0	28	96	3	101	25	5	33	35	1.80
10934428--10934527	29	3.4	29	66	17	71	36	8	28	28	1.85
10934500--10934586	41	2.1	41	85	8	115	29	3	31	35	1.74
10934447--10934628	100	1.9	96	87	4	265	32	6	30	31	1.82
10934601--10934722	30	4.1	28	83	9	102	34	2	25	37	1.69
10934616--10934722	30	3.6	29	87	6	144	36	1	24	37	1.66
10935198--10935253	29	1.9	28	85	7	76	1	41	0	57	1.09
10936612--10936663	6	8.8	6	76	4	52	55	1	1	40	1.22
10936612--10936663	12	4.4	12	85	4	70	55	1	1	40	1.22
10936625--10936659	11	3.1	11	87	4	52	57	0	2	40	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10937004--10938011	93	10.9	93	91	4	867	32	17	16	33	1.92
10937005--10937636	92	6.8	92	92	2	948	29	17	19	33	1.95
10937652--10938006	40	7.5	51	67	26	253	38	16	10	34	1.83
10938044--10938192	50	3.0	49	71	17	126	15	27	20	36	1.93
10938006--10938216	101	2.1	101	83	4	257	15	26	19	38	1.91
10939500--10939551	23	2.2	23	86	6	68	1	9	5	82	0.90
10939484--10939553	22	3.1	21	76	11	68	1	15	4	78	0.98
10940396--10940426	11	2.7	12	90	10	55	6	6	6	80	1.02
10944010--10944359	29	11.9	29	69	17	125	35	5	29	29	1.80
10944086--10944356	59	4.6	59	86	2	357	35	4	29	30	1.77
10944017--10944360	118	2.9	118	78	5	367	36	4	28	29	1.78
10944312--10944418	30	3.5	30	83	8	128	37	3	26	32	1.74
10944858--10944914	13	3.9	14	77	20	55	1	45	0	52	1.11
10946277--10946343	12	5.8	12	79	13	68	59	2	1	35	1.22
10946305--10946347	23	1.9	22	95	4	77	65	0	0	34	0.93
10946318--10946353	17	2.1	17	89	5	54	63	0	0	36	0.94
10949562--10949692	55	2.4	54	88	3	174	48	13	7	30	1.71
10955906--10956121	59	3.7	59	84	4	294	36	4	29	29	1.77
10955906--10956150	59	4.1	59	78	12	243	36	4	28	30	1.77
10956068--10956204	30	4.5	30	82	7	152	36	3	25	34	1.74
10956665--10956720	29	1.9	28	85	7	76	1	41	0	57	1.09
10958095--10958146	6	8.8	6	76	4	52	55	1	1	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10958095--10958146	12	4.4	12	85	4	70	55	1	1	40	1.22
10958108--10958142	11	3.1	11	87	4	52	57	0	2	40	1.14
10958488--10959153	92	7.3	92	94	0	1122	28	17	20	33	1.96
10958935--10959200	40	5.5	50	66	25	162	29	17	18	34	1.94
10959194--10959436	40	5.4	40	67	26	141	38	16	10	33	1.84
10959167--10959486	93	3.5	93	94	2	538	36	17	10	35	1.85
10959227--10959396	53	3.5	53	66	24	163	38	16	10	34	1.83
10960794--10960850	24	2.4	23	80	11	62	1	10	5	82	0.90
10960784--10960852	22	3.1	21	79	8	75	1	15	4	78	0.98
10961696--10961743	10	4.8	10	80	10	62	10	2	8	79	1.02
10964927--10964988	28	2.2	28	88	2	90	29	9	27	33	1.88
10964937--10965256	29	10.9	28	67	12	124	35	7	28	28	1.84
10965012--10965287	59	4.7	59	88	0	365	36	5	29	28	1.80
10964968--10965287	177	1.8	176	86	3	473	36	6	28	28	1.81
10965234--10965371	30	4.6	30	82	10	165	36	2	26	34	1.71
10967264--10967297	6	5.7	6	92	0	59	47	2	0	50	1.16
10973732--10973864	55	2.4	56	87	3	182	29	9	14	47	1.74
10975162--10975243	34	2.4	34	81	0	110	46	19	10	23	1.81
10980050--10980182	55	2.4	56	87	3	182	29	9	14	47	1.74
10981480--10981561	34	2.4	34	81	0	110	46	19	10	23	1.81
10987093--10987225	55	2.4	56	87	3	182	29	9	14	47	1.74
10988523--10988604	34	2.4	34	81	0	110	46	19	10	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10994145--10994277	55	2.4	56	87	3	182	29	9	14	47	1.74
10995574--10995655	34	2.4	34	81	0	110	46	19	10	23	1.81
10998124--10998264	30	4.7	30	81	11	155	33	26	3	36	1.74
10998124--10998558	59	7.4	57	79	9	240	30	28	5	35	1.81
10998257--10998354	29	3.3	30	69	19	89	27	32	7	32	1.84
10998222--10998553	59	5.6	59	84	2	373	29	29	6	35	1.82
10998274--10998368	29	3.2	29	70	24	90	32	33	5	28	1.80
10998222--10998553	117	2.8	117	81	3	364	29	29	6	35	1.82
10998211--10998529	176	1.8	175	88	2	487	28	29	5	36	1.81
11002157--11002202	10	4.6	10	78	10	58	78	8	2	10	1.05
11003045--11003098	23	2.4	22	76	11	56	81	5	11	1	0.93
11003045--11003109	26	2.5	26	80	14	80	81	4	12	1	0.91
11004367--11004589	101	2.2	100	85	4	297	40	21	25	12	1.89
11004424--11004584	51	3.2	49	72	11	137	40	21	26	11	1.87
11004641--11004889	40	5.6	40	68	26	146	34	10	16	38	1.83
11004681--11004850	53	3.5	53	69	24	172	34	11	15	38	1.83
11004587--11005135	93	5.9	93	89	5	641	34	13	16	36	1.87
11004584--11005583	92	10.9	93	91	4	900	33	16	17	32	1.92
11005108--11005533	40	9.5	41	62	22	126	32	20	18	28	1.96
11004964--11005582	92	6.7	92	93	1	976	33	19	17	29	1.95
11005510--11005641	50	2.7	49	91	3	212	35	20	17	26	1.95
11005932--11005965	11	3.1	11	82	0	50	41	2	0	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11008826--11008931	30	3.5	30	82	7	133	38	24	0	35	1.62
11008922--11009052	59	2.3	55	81	6	147	30	29	6	32	1.84
11013238--11013276	16	2.5	15	84	12	51	38	0	10	51	1.36
11014048--11014180	55	2.4	56	87	3	182	29	9	14	47	1.74
11015479--11015560	34	2.4	34	81	0	110	46	19	10	23	1.81
11021081--11021213	55	2.4	56	87	3	182	29	9	14	47	1.74
11022511--11022592	34	2.4	34	81	0	110	46	19	10	23	1.81
11026967--11027099	55	2.4	56	88	3	191	30	8	14	47	1.73
11030094--11030226	55	2.4	55	86	3	171	28	9	14	48	1.74
11030118--11030226	54	2.0	55	89	1	166	27	10	12	49	1.73
11031519--11031600	34	2.4	34	72	0	83	47	19	9	23	1.79
11036264--11036394	52	2.4	55	86	8	173	29	9	14	47	1.75
11039439--11039486	11	4.5	11	76	7	55	79	8	2	10	1.02
11040330--11040399	22	3.1	21	76	11	68	78	4	15	1	0.98
11040332--11040383	25	2.2	25	86	6	72	82	5	9	1	0.90
11040332--11040394	26	2.4	25	82	12	74	82	4	11	1	0.88
11041654--11041876	101	2.2	100	85	4	297	40	21	25	12	1.89
11041711--11041871	51	3.2	49	72	11	137	40	21	26	11	1.87
11041928--11042159	40	5.2	40	66	27	135	34	10	15	39	1.83
11041968--11042137	53	3.5	53	69	24	172	34	11	15	38	1.83
11041874--11042197	93	3.5	93	94	2	546	35	11	16	36	1.85
11041871--11042785	92	9.9	92	90	4	802	33	16	17	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11042153--11042784	92	6.8	92	92	2	939	33	19	17	29	1.95
11042712--11042842	50	2.7	49	91	3	210	35	20	17	25	1.95
11043127--11043162	11	3.2	11	88	4	54	38	2	0	58	1.13
11044549--11044604	29	1.9	28	85	7	76	57	0	41	1	1.09
11045082--11045218	30	4.5	30	82	7	152	34	26	2	36	1.72
11045082--11045390	59	5.2	60	78	10	194	33	26	3	36	1.74
11045169--11045428	59	4.4	58	82	3	299	31	29	4	34	1.78
11045169--11045428	117	2.2	118	86	1	353	31	29	4	34	1.78
11045345--11045481	28	4.7	30	77	10	99	32	31	5	30	1.79
11045403--11045481	28	2.8	28	90	0	122	34	31	5	29	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163