genome.fa.s8.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  56  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14006408--14006479	22	3.2	23	69	15	78	18	11	11	59	1.59
14006395--14006501	44	2.4	44	98	0	205	16	9	7	66	1.42
14009315--14009542	112	2.0	112	100	0	456	32	8	16	42	1.78
14010420--14010540	23	5.2	23	82	11	156	11	25	23	39	1.88
14010420--14010540	48	2.6	46	87	7	172	11	25	23	39	1.88
14010541--14010607	23	3.0	23	76	10	66	14	17	19	47	1.82
14013166--14013263	31	3.2	30	73	16	85	38	12	0	48	1.41
14017817--14017861	21	2.2	21	88	4	65	17	2	8	71	1.23
14018034--14018078	20	2.2	20	84	7	56	71	2	2	24	1.09
14031874--14031917	22	2.0	21	86	4	61	20	0	15	63	1.31
14033366--14033423	21	2.8	21	74	7	64	32	25	12	29	1.92
14043973--14044145	49	3.5	49	82	3	195	36	16	29	17	1.92
14044488--14045010	39	13.4	39	70	8	321	26	32	17	24	1.97
14044488--14044939	117	3.9	117	75	10	404	25	32	17	24	1.96
14044574--14045010	233	1.9	234	85	4	605	26	32	16	24	1.96
14044574--14045044	78	6.1	78	84	3	538	27	32	16	23	1.96
14045638--14045670	14	2.3	15	94	5	59	45	21	9	24	1.80
14047827--14047905	27	3.0	27	79	7	108	37	20	15	26	1.92
14047796--14047905	52	2.1	53	86	5	154	35	20	17	26	1.95
14047831--14047905	25	2.8	26	80	8	89	38	20	14	26	1.91
14053501--14053550	21	2.5	20	84	9	59	34	0	2	64	1.05
14053501--14053555	11	5.5	10	75	14	51	32	0	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14053488--14053576	18	4.7	20	74	19	75	39	1	3	56	1.23
14055969--14056198	43	5.3	43	87	2	327	29	27	19	23	1.98
14062607--14062723	57	2.0	58	82	8	141	41	7	11	39	1.69
14062780--14062823	19	2.4	19	80	3	54	47	4	6	40	1.50
14063446--14063878	41	10.6	41	79	2	415	22	28	19	29	1.98
14063903--14064011	40	2.7	39	92	5	175	21	21	21	36	1.95
14064553--14064658	19	5.2	19	69	18	61	68	20	4	5	1.28
14064635--14064696	22	2.8	22	75	4	63	69	17	6	6	1.32
14064616--14064683	11	6.4	11	72	13	61	70	14	5	8	1.31
14065191--14065251	23	2.7	23	84	0	86	49	14	4	31	1.65
14065025--14065474	223	2.0	223	97	0	855	39	18	6	36	1.75
14065414--14066525	23	48.5	23	86	2	1531	46	15	5	32	1.69
14065414--14066664	46	27.1	46	88	3	1604	46	15	5	32	1.70
14065414--14066664	69	18.0	69	85	4	1604	46	15	5	32	1.70
14066525--14066661	23	6.0	23	81	1	141	43	14	7	34	1.73
14066406--14066638	122	1.9	124	88	2	353	46	14	6	33	1.70
14066449--14066604	79	2.0	76	92	3	258	46	14	8	30	1.74
14082002--14082069	24	2.9	24	86	2	93	26	13	10	50	1.73
14083997--14084071	24	3.1	24	86	0	105	26	9	8	56	1.59
14087017--14087051	15	2.3	15	90	0	52	48	0	8	42	1.33
14087960--14088009	24	2.1	24	100	0	100	28	30	12	30	1.92
14088740--14088809	34	2.1	34	91	0	113	32	24	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14088774--14088948	52	3.4	52	90	0	269	33	22	14	29	1.94
14089234--14089275	20	2.1	20	91	8	68	33	23	0	42	1.55
14090475--14090506	15	2.1	15	100	0	64	53	28	0	18	1.45
14095504--14095585	26	3.2	26	61	19	62	29	29	17	24	1.97
14095450--14095738	52	5.5	52	89	1	382	32	23	14	28	1.94
14096024--14096065	20	2.1	20	91	8	68	33	23	0	42	1.55
14098944--14099091	26	5.8	26	83	5	176	29	13	27	29	1.94
14098941--14099091	52	2.9	51	84	3	196	29	14	27	28	1.95
14099686--14099711	3	8.7	3	100	0	52	30	0	0	69	0.89
14102512--14102551	20	2.0	20	85	0	53	25	22	5	47	1.71
14103833--14103883	26	2.0	26	84	7	68	33	23	17	25	1.96
14103869--14104185	25	12.7	25	79	0	303	31	24	17	26	1.97
14107325--14107577	89	2.7	91	87	8	350	31	20	12	35	1.89
14109907--14110094	59	3.2	58	86	5	236	34	3	28	33	1.73
14109934--14110238	30	10.4	28	71	20	198	34	3	29	32	1.75
14109928--14110094	59	2.8	59	90	4	259	34	1	29	34	1.68
14110074--14110270	58	3.4	58	86	2	270	31	5	30	31	1.81
14109992--14110173	89	2.1	89	88	3	269	35	3	28	32	1.75
14109931--14110332	29	13.8	29	70	17	153	32	3	29	33	1.76
14110245--14110342	29	3.3	29	83	9	119	26	5	28	39	1.77
14112068--14112136	17	4.2	17	81	10	81	57	2	2	36	1.28
14112076--14112103	14	2.0	14	100	0	56	57	0	7	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14112421--14113162	76	9.8	76	92	2	1192	33	17	15	32	1.92
14125251--14125618	59	6.3	59	83	6	462	35	3	27	32	1.75
14125244--14125615	117	3.2	114	85	4	476	35	4	28	32	1.77
14125281--14125623	29	11.8	29	70	13	143	35	3	27	32	1.75
14127407--14127444	17	2.2	17	95	0	67	57	0	2	39	1.12
14131300--14131361	6	10.5	6	79	10	56	48	0	22	29	1.51
14131441--14131541	38	2.6	40	71	10	100	21	16	28	32	1.96
14137445--14137523	23	3.3	23	82	7	86	18	20	11	49	1.78
14137467--14137520	23	2.4	23	93	3	92	20	22	11	46	1.82
14139202--14139231	7	4.3	7	100	0	60	70	0	0	30	0.88
14146559--14146587	5	5.8	5	100	0	58	41	17	0	41	1.49
14151660--14151713	20	2.7	20	91	0	81	27	7	33	31	1.84
14152803--14152915	54	2.1	54	98	0	217	21	24	14	39	1.90
14154598--14154651	20	2.7	20	97	0	99	29	9	25	35	1.87
14154616--14154672	20	2.8	20	84	5	62	33	7	29	29	1.84
14154859--14154912	20	2.7	20	85	0	72	27	9	33	29	1.88
14155744--14155774	10	3.1	10	100	0	62	32	0	9	58	1.31
14156401--14156626	94	2.4	93	81	6	278	28	19	23	29	1.98
14157401--14157449	24	2.0	24	84	7	64	36	12	14	36	1.83
14159485--14159533	2	24.5	2	100	0	98	48	0	0	51	1.00
14162363--14162682	94	3.4	94	88	2	450	28	20	24	27	1.99
14177388--14177431	18	2.4	18	84	0	61	11	61	18	9	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14177394--14177422	6	4.8	6	100	0	58	13	68	17	0	1.20
14182300--14182675	93	4.0	93	96	0	680	28	29	19	22	1.98
14183495--14183571	38	2.0	38	100	0	154	51	2	15	29	1.57
14190508--14190548	20	2.0	20	100	0	82	24	24	21	29	1.99
14191768--14191815	22	2.2	22	81	7	53	16	0	12	70	1.16
14191821--14191907	24	3.8	23	80	7	88	27	12	19	40	1.88
14202337--14202414	40	1.9	41	89	2	122	24	11	34	29	1.91
14202507--14202629	54	2.3	54	82	2	149	30	15	19	34	1.93
14205096--14205131	13	2.8	13	86	0	54	58	8	27	5	1.50
14205279--14205344	29	2.3	29	97	0	123	51	7	0	40	1.30
14205279--14205352	29	2.6	29	89	4	96	50	6	2	40	1.43
14207724--14207764	21	2.0	21	85	9	57	21	17	26	34	1.95
14208476--14208751	137	2.0	137	95	0	498	22	15	18	43	1.87
14209844--14209908	33	2.0	33	81	0	76	29	18	6	46	1.73
14211035--14211083	25	2.0	25	91	0	80	46	34	2	16	1.58
14211135--14211173	11	3.5	11	83	13	53	17	30	28	23	1.97
14211163--14211275	7	16.4	7	75	3	86	21	21	23	34	1.97
14225543--14225598	24	2.3	24	87	0	76	48	8	5	37	1.58
14228888--14228946	24	2.5	24	86	5	75	27	11	25	35	1.91
14231103--14231161	31	2.0	29	86	6	82	27	10	0	62	1.27
14231147--14231188	22	1.9	22	90	0	66	23	9	0	66	1.21
14231198--14231246	15	3.0	16	82	11	64	26	2	0	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14231207--14231255	10	5.1	10	79	18	50	24	2	0	73	0.94
14231192--14231250	18	3.4	17	74	23	52	25	1	0	72	0.93
14235654--14235895	124	2.0	124	94	0	421	27	24	19	28	1.99
14237883--14238323	45	9.9	44	87	3	532	34	23	16	25	1.95
14240187--14240245	31	2.0	29	83	6	73	25	10	3	61	1.44
14240280--14240332	17	3.2	16	75	17	54	28	1	1	67	1.11
14240292--14240345	28	1.9	28	82	14	67	25	3	3	66	1.25
14244527--14244567	20	2.0	20	85	0	55	26	0	17	56	1.41
14257203--14257254	23	2.3	23	80	9	63	40	9	1	48	1.47
14265453--14265479	14	1.9	14	100	0	54	40	7	14	37	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163