genome.fa.s8.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032252.1 Gossypioides kirkii chromosome KI_10
Parameters: 2 7 7 80 10 50 1000
Length:  47257441

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  121  of  163  ( 19493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33419417--33419469	13	4.2	13	80	2	54	30	1	1	66	1.13
33419412--33419485	3	24.0	3	73	10	51	28	1	4	66	1.18
33420121--33420160	17	2.3	18	91	4	64	50	2	0	47	1.14
33420110--33420170	29	2.1	29	96	0	113	50	3	0	45	1.17
33420102--33420140	12	3.5	11	83	10	53	51	2	0	46	1.14
33420102--33420173	29	3.0	23	75	24	76	50	4	0	45	1.21
33420300--33420324	2	12.5	2	100	0	50	52	0	0	48	1.00
33423019--33423047	14	2.0	15	93	6	51	0	17	13	68	1.20
33423014--33423051	15	2.4	16	83	16	53	0	15	13	71	1.16
33423238--33423287	26	1.9	26	84	8	66	18	8	18	56	1.65
33423297--33423337	16	2.4	17	92	8	66	9	0	7	82	0.83
33424022--33424077	29	1.9	30	89	10	89	60	1	3	33	1.24
33424424--33424463	11	3.3	12	86	6	55	75	5	0	20	0.99
33428139--33428187	14	3.4	14	88	5	62	38	6	20	34	1.77
33428355--33428414	21	3.0	20	80	7	59	33	6	5	55	1.48
33429155--33429204	24	2.0	25	92	3	84	14	6	24	56	1.60
33435013--33435105	34	2.8	33	86	3	114	45	35	0	19	1.51
33435013--33435105	33	2.8	34	85	3	116	45	35	0	19	1.51
33435191--33435241	23	2.2	24	92	3	86	27	15	23	33	1.95
33435755--33435806	26	2.0	26	85	7	70	30	0	23	46	1.53
33435927--33435966	6	6.7	6	97	0	62	22	0	35	42	1.54
33436324--33436361	12	3.1	12	85	14	51	21	5	0	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33436490--33436569	2	40.0	2	100	0	160	50	0	0	50	1.00
33438821--33438863	23	1.9	22	81	13	52	32	23	11	32	1.90
33448895--33448941	6	7.8	6	82	0	58	78	2	17	2	0.94
33448900--33448949	24	2.1	24	96	0	91	76	4	18	2	1.04
33448912--33448949	12	3.2	12	84	0	58	76	5	18	0	0.97
33452663--33452713	23	2.2	23	85	0	66	19	21	13	45	1.85
33455163--33455232	33	2.1	34	94	5	124	30	17	20	32	1.95
33459520--33459549	14	2.1	14	93	0	51	20	10	13	56	1.65
33460614--33460678	19	3.3	21	70	14	66	21	18	7	52	1.70
33461234--33461325	20	4.7	19	67	15	53	18	16	10	54	1.70
33461781--33461817	15	2.5	15	100	0	74	40	8	16	35	1.78
33462743--33462808	27	2.4	27	82	5	80	24	30	15	30	1.95
33471256--33471306	16	3.1	16	78	15	59	70	0	1	27	0.98
33471814--33471872	19	3.2	19	78	4	66	54	0	0	45	0.99
33475257--33475307	24	2.1	24	96	0	93	56	9	11	21	1.63
33486385--33486523	70	2.0	69	95	2	253	35	8	16	39	1.79
33492633--33492691	28	2.1	29	87	9	86	30	1	3	64	1.20
33493162--33493199	11	3.5	11	92	0	67	21	0	5	73	1.02
33494418--33494457	3	13.3	3	100	0	80	0	32	0	67	0.91
33502541--33502599	27	2.2	27	81	0	64	27	15	32	25	1.95
33503524--33503705	30	6.1	30	78	7	174	41	17	3	37	1.67
33503530--33503707	89	2.0	90	84	3	234	42	16	3	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33503524--33503705	60	3.1	59	81	6	206	41	17	3	37	1.67
33508657--33508714	29	2.0	29	96	0	107	34	12	17	36	1.87
33515420--33515553	50	2.7	50	89	0	196	35	20	24	18	1.95
33515605--33515899	40	7.4	40	75	10	280	31	24	17	25	1.97
33515605--33515900	80	3.7	80	85	0	405	31	24	17	25	1.97
33516406--33516435	15	1.9	16	93	6	53	23	0	0	76	0.78
33517010--33517079	2	35.0	2	100	0	140	50	0	0	50	1.00
33517692--33517876	30	6.2	29	82	8	201	40	21	2	35	1.67
33517700--33517876	90	2.0	90	85	5	243	40	19	2	36	1.67
33520843--33520953	27	4.1	27	81	2	116	23	39	18	18	1.92
33521438--33521472	18	1.9	18	88	0	52	14	14	25	45	1.82
33525296--33525415	60	2.1	57	84	4	150	54	15	5	25	1.61
33527108--33527154	15	3.1	15	93	6	78	31	6	0	61	1.21
33528409--33528789	113	3.6	103	78	8	379	34	13	23	28	1.92
33531285--33531310	2	13.0	2	100	0	52	50	0	0	50	1.00
33533920--33534142	105	2.1	105	83	3	279	34	13	22	28	1.93
33539948--33540001	19	2.9	19	75	10	58	62	0	1	35	1.06
33540156--33540193	19	2.0	20	85	15	53	26	7	7	57	1.54
33541098--33541156	22	2.7	21	82	10	66	54	1	6	37	1.37
33541207--33541264	28	2.1	28	80	6	64	37	5	0	56	1.21
33541497--33541544	15	3.1	15	77	11	51	54	0	0	45	0.99
33541482--33541562	41	2.0	41	82	4	101	56	0	1	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33541581--33541666	16	5.6	16	68	13	54	44	1	0	54	1.07
33541577--33541677	21	4.9	21	71	9	82	45	0	0	53	1.07
33542541--33542575	17	2.1	17	88	0	52	37	11	25	25	1.90
33545972--33546614	320	2.0	320	97	0	1223	38	18	14	27	1.90
33558321--33558368	18	2.8	17	81	6	60	39	4	0	56	1.19
33585934--33585964	12	2.6	12	94	0	53	51	32	3	12	1.56
33586119--33586145	11	2.5	11	100	0	54	44	0	0	55	0.99
33587714--33587761	24	2.0	25	91	4	80	64	18	0	16	1.29
33587714--33587770	21	2.5	22	86	8	71	63	21	0	15	1.31
33589627--33589840	110	1.9	110	87	0	311	40	14	12	33	1.83
33590155--33590216	2	31.0	2	100	0	124	50	0	0	50	1.00
33590365--33590394	5	5.8	5	92	7	51	80	0	0	20	0.72
33590346--33590394	15	2.9	16	82	17	55	71	2	6	20	1.18
33593082--33593159	29	2.7	28	78	7	75	37	30	3	28	1.75
33593110--33593354	57	4.2	58	86	4	343	33	29	2	34	1.71
33593110--33593354	29	8.5	28	70	19	157	33	29	2	34	1.71
33600886--33600917	14	2.3	14	100	0	64	31	6	28	34	1.82
33605429--33606019	76	7.8	76	92	0	900	32	15	19	32	1.93
33605490--33605994	38	13.4	37	66	21	230	33	14	19	32	1.92
33606288--33606381	6	15.8	6	69	17	63	39	2	3	55	1.28
33606301--33606380	17	4.9	17	84	9	94	37	2	2	57	1.26
33606287--33606342	28	2.0	29	89	3	87	37	1	3	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33606322--33606380	31	1.9	31	92	0	100	38	3	1	55	1.26
33606295--33606374	11	6.9	11	72	10	52	37	2	2	57	1.26
33607569--33607597	7	4.3	7	95	4	51	75	0	13	10	1.04
33608346--33608596	117	2.1	118	89	2	382	34	29	1	34	1.67
33608346--33608596	59	4.3	59	90	2	382	34	29	1	34	1.67
33608376--33608596	29	7.5	29	70	17	161	33	28	1	35	1.68
33608349--33608604	29	8.8	29	69	20	133	33	29	2	34	1.71
33608346--33608636	59	5.0	58	85	4	318	32	30	3	33	1.74
33609967--33609999	11	2.9	12	86	13	52	9	6	9	75	1.18
33612221--33612276	2	28.5	2	92	3	96	46	0	1	51	1.11
33628289--33628345	23	2.4	24	85	8	80	10	14	5	70	1.32
33628333--33628443	13	9.4	13	64	19	64	9	18	4	66	1.38
33628292--33628405	58	2.0	57	87	1	165	10	16	4	68	1.35
33628350--33628428	23	3.5	23	87	1	106	10	17	5	67	1.38
33628314--33628393	35	2.3	35	82	8	99	10	16	3	70	1.30
33628305--33628462	81	1.9	82	92	3	266	10	16	5	68	1.36
33628305--33628462	58	2.7	58	82	2	165	10	16	5	68	1.36
33629646--33629700	21	2.6	22	82	5	60	36	10	14	38	1.81
33639553--33639599	17	2.8	17	87	3	60	44	17	6	31	1.73
33639626--33639669	16	2.7	16	89	3	61	50	18	2	29	1.59
33640725--33640837	51	2.2	51	87	0	154	28	8	26	36	1.86
33644100--33644146	24	2.0	24	95	0	85	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33647503--33647537	15	2.3	15	90	0	52	22	14	25	37	1.92
33658436--33658492	29	2.0	27	93	6	96	61	0	0	38	0.96
33658662--33658740	30	2.7	30	96	2	142	32	3	10	53	1.53
33658898--33658954	29	1.9	30	85	3	80	47	7	5	40	1.53
33658912--33658979	31	2.4	27	74	13	64	48	7	4	39	1.51
33661117--33661248	63	2.1	65	85	2	178	28	10	18	42	1.84
33670007--33670107	35	3.0	33	81	4	105	51	18	14	14	1.76
33673870--33673899	3	10.0	3	100	0	60	66	0	0	33	0.92
33677175--33677202	3	9.3	3	100	0	56	32	0	67	0	0.91
33679694--33679760	30	2.3	30	82	5	84	25	13	11	49	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163